Wall clock time and date at job start Wed Apr 1 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37994 * 120.82305 * 2 1 4 4 C 1.39122 * 119.26507 * 180.27414 * 3 2 1 5 5 O 1.35498 * 119.52755 * 179.71887 * 4 3 2 6 6 N 1.32436 * 120.95119 * 359.69703 * 4 3 2 7 7 C 1.31641 * 121.79956 * 0.02562 * 6 4 3 8 8 C 1.39563 * 120.62509 * 359.97438 * 7 6 4 9 9 C 1.47613 * 120.49787 * 179.97438 * 8 7 6 10 10 O 1.21579 * 119.99799 * 126.16689 * 9 8 7 11 11 N 1.34773 * 120.00119 * 306.15800 * 9 8 7 12 12 C 1.46839 * 120.40972 * 354.13525 * 11 9 8 13 13 C 1.51964 * 109.37557 * 231.92517 * 12 11 9 14 14 C 1.52788 * 109.55734 * 306.69320 * 13 12 11 15 15 H 1.08999 * 108.96101 * 302.42992 * 14 13 12 16 16 O 1.42612 * 111.10950 * 181.89576 * 14 13 12 17 17 C 1.43153 * 113.62796 * 176.38621 * 16 14 13 18 18 C 1.53196 * 109.73731 * 61.69058 * 17 16 14 19 19 N 1.47352 * 108.80194 * 308.78317 * 18 17 16 20 20 C 1.36929 * 121.30574 * 230.21866 * 19 18 17 21 21 H 1.08001 * 120.00018 * 145.05886 * 20 19 18 22 22 C 1.38811 * 120.00506 * 325.06884 * 20 19 18 23 23 N 1.31626 * 119.99505 * 4.38815 * 22 20 19 24 24 Si 1.86799 * 120.00408 * 184.39474 * 22 20 19 25 25 H 1.48494 * 109.47236 * 89.99304 * 24 22 20 26 26 H 1.48502 * 109.47102 * 209.99640 * 24 22 20 27 27 H 1.48506 * 109.46658 * 329.99461 * 24 22 20 28 28 C 1.46878 * 117.38749 * 50.24403 * 19 18 17 29 29 H 1.09004 * 109.65411 * 67.64788 * 28 19 18 30 30 C 1.47129 * 120.41108 * 174.15008 * 11 9 8 31 31 H 1.09002 * 109.47069 * 275.15906 * 1 2 3 32 32 H 1.09000 * 109.47225 * 35.15929 * 1 2 3 33 33 H 1.09000 * 109.47266 * 155.16216 * 1 2 3 34 34 H 1.08000 * 120.37108 * 359.97156 * 3 2 1 35 35 H 0.96698 * 114.00105 * 269.97897 * 5 4 3 36 36 H 1.08000 * 119.68719 * 180.02562 * 7 6 4 37 37 H 1.08995 * 109.50876 * 352.19775 * 12 11 9 38 38 H 1.09004 * 109.51099 * 112.33620 * 12 11 9 39 39 H 1.09000 * 109.72940 * 186.34577 * 13 12 11 40 40 H 1.08997 * 108.69447 * 66.40687 * 13 12 11 41 41 H 1.08995 * 109.42282 * 181.77154 * 17 16 14 42 42 H 1.09004 * 109.42654 * 301.60678 * 17 16 14 43 43 H 1.08997 * 109.57633 * 188.98865 * 18 17 16 44 44 H 1.08999 * 109.57710 * 68.58392 * 18 17 16 45 45 H 0.96998 * 119.99353 * 180.02562 * 23 22 20 46 46 H 1.08995 * 109.72576 * 7.08814 * 30 11 9 47 47 H 1.08997 * 109.72918 * 246.41442 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1850 0.0000 4 6 3.6047 1.1472 -0.0058 5 8 4.3043 2.3076 -0.0116 6 7 4.2547 -0.0067 -0.0053 7 6 3.6204 -1.1602 0.0002 8 6 2.2255 -1.2044 0.0062 9 6 1.5171 -2.4995 0.0118 10 8 0.6839 -2.7329 0.8658 11 7 1.7938 -3.4230 -0.9300 12 6 2.7019 -3.1046 -2.0391 13 6 2.0277 -3.4477 -3.3571 14 6 1.5415 -4.8957 -3.3211 15 1 2.3904 -5.5495 -3.1212 16 8 0.9409 -5.2668 -4.5602 17 6 0.5391 -6.6397 -4.6146 18 6 -0.5167 -6.9128 -3.5387 19 7 -0.0136 -6.4211 -2.2440 20 6 -0.0313 -7.2126 -1.1268 21 1 0.7632 -7.1376 -0.3991 22 6 -1.0704 -8.1116 -0.9294 23 7 -1.9924 -8.2655 -1.8561 24 14 -1.1605 -9.1028 0.6514 25 1 -1.9483 -8.3524 1.6620 26 1 -1.8167 -10.4072 0.3810 27 1 0.2121 -9.3368 1.1677 28 6 0.5071 -5.0485 -2.1987 29 1 -0.3083 -4.3418 -2.3528 30 6 1.1896 -4.7626 -0.8596 31 1 -0.3633 0.0924 1.0235 32 1 -0.3634 0.8402 -0.5918 33 1 -0.3634 -0.9326 -0.4317 34 1 1.6936 2.1314 -0.0005 35 1 4.5039 2.6421 -0.8967 36 1 4.1848 -2.0809 0.0008 37 1 2.9459 -2.0425 -2.0163 38 1 3.6156 -3.6909 -1.9413 39 1 2.7351 -3.3202 -4.1764 40 1 1.1776 -2.7804 -3.4988 41 1 0.1199 -6.8560 -5.5972 42 1 1.4057 -7.2782 -4.4426 43 1 -0.7041 -7.9847 -3.4747 44 1 -1.4403 -6.3930 -3.7932 45 1 -2.7187 -8.8935 -1.7180 46 1 0.4524 -4.7920 -0.0573 47 1 1.9645 -5.5066 -0.6755 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074340983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:54 Heat of formation + Delta-G solvation = -46.067265 kcal Electronic energy + Delta-G solvation = -31888.036781 eV Core-core repulsion = 27651.359280 eV Total energy + Delta-G solvation = -4236.677501 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.21441 -39.89517 -38.61961 -37.29106 -36.20914 -34.72503 -34.13393 -32.16206 -31.49712 -30.75588 -29.76196 -28.27362 -27.08862 -25.56541 -24.18228 -23.89009 -22.69159 -22.01685 -21.43417 -19.83376 -19.40306 -18.68427 -17.76009 -17.21874 -16.86226 -16.23630 -15.99550 -15.45514 -15.31883 -15.04792 -14.75910 -14.48296 -14.33680 -14.01017 -13.81575 -13.68789 -13.25793 -13.11003 -13.01760 -12.95159 -12.88195 -12.69652 -12.42142 -12.30740 -12.00759 -11.93300 -11.35189 -11.12646 -10.92531 -10.87862 -10.62321 -10.29085 -10.25553 -10.17503 -10.10994 -9.86384 -9.66136 -9.56671 -9.19488 -8.98760 -8.58124 -8.45006 -6.66494 -5.89235 -3.43378 0.40743 0.83870 2.58314 2.90312 3.22403 3.33942 3.40187 3.40637 3.41667 4.16312 4.24471 4.32237 4.38255 4.40668 4.68672 4.81919 4.91463 5.08794 5.13910 5.27197 5.28158 5.32181 5.38586 5.42640 5.47592 5.49506 5.64650 5.69975 5.72445 5.84120 5.88779 5.99346 6.07617 6.10584 6.11329 6.21524 6.32151 6.43190 6.57971 6.63416 6.82739 7.08736 7.14900 7.43395 7.51304 7.56573 7.68057 7.88284 8.16565 8.35630 9.08527 9.67469 10.28836 11.17357 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.003233 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.765774 B = 8659.303030 C = 9701.470614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.022 3.978 3 C -0.191 4.191 4 C 0.325 3.675 5 O -0.481 6.481 6 N -0.507 5.507 7 C 0.161 3.839 8 C -0.186 4.186 9 C 0.564 3.436 10 O -0.522 6.522 11 N -0.603 5.603 12 C 0.110 3.890 13 C -0.125 4.125 14 C 0.077 3.923 15 H 0.052 0.948 16 O -0.390 6.390 17 C 0.037 3.963 18 C 0.141 3.859 19 N -0.589 5.589 20 C -0.262 4.262 21 H 0.069 0.931 22 C 0.016 3.984 23 N -0.901 5.901 24 Si 0.903 3.097 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.278 1.278 28 C 0.138 3.862 29 H 0.036 0.964 30 C 0.124 3.876 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.403 0.597 36 H 0.167 0.833 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.040 0.960 43 H 0.105 0.895 44 H 0.025 0.975 45 H 0.257 0.743 46 H 0.105 0.895 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.151 16.623 -2.753 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.013 3.987 3 C -0.212 4.212 4 C 0.148 3.852 5 O -0.289 6.289 6 N -0.226 5.226 7 C 0.003 3.997 8 C -0.192 4.192 9 C 0.351 3.649 10 O -0.398 6.398 11 N -0.336 5.336 12 C -0.013 4.013 13 C -0.163 4.163 14 C 0.018 3.982 15 H 0.070 0.930 16 O -0.309 6.309 17 C -0.041 4.041 18 C 0.016 3.984 19 N -0.313 5.313 20 C -0.391 4.391 21 H 0.087 0.913 22 C -0.184 4.184 23 N -0.544 5.544 24 Si 0.732 3.268 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.203 1.203 28 C 0.030 3.970 29 H 0.054 0.946 30 C 0.003 3.997 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.164 0.836 35 H 0.261 0.739 36 H 0.184 0.816 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.123 0.877 44 H 0.043 0.957 45 H 0.067 0.933 46 H 0.123 0.877 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.389 16.503 -1.833 19.587 hybrid contribution -0.856 -0.647 0.413 1.150 sum 9.533 15.856 -1.420 18.556 Atomic orbital electron populations 1.20938 0.88962 1.04010 1.03924 1.20266 0.97355 0.90689 0.90346 1.21919 0.93719 0.99449 1.06160 1.19310 0.87048 0.85207 0.93684 1.84732 1.75985 1.34153 1.34011 1.67186 1.41850 0.98181 1.15402 1.22730 0.89966 0.95306 0.91707 1.20972 0.95476 0.94632 1.08078 1.17927 0.82155 0.82937 0.81926 1.90840 1.32603 1.78802 1.37564 1.48240 1.46562 1.14064 1.24743 1.21537 0.92750 1.01257 0.85785 1.21582 1.01283 0.96753 0.96718 1.22386 0.95416 0.94119 0.86317 0.92993 1.87738 1.80152 1.28422 1.34589 1.23400 0.98673 0.81439 1.00571 1.21579 0.92068 1.02214 0.82585 1.43933 1.73696 1.07261 1.06451 1.19055 1.03970 1.16726 0.99339 0.91340 1.25329 0.95262 1.00330 0.97474 1.69897 1.14195 1.37715 1.32595 0.86295 0.77955 0.79026 0.83552 1.21011 1.21593 1.20280 1.21280 0.94177 0.89477 0.92026 0.94598 1.21804 0.98284 0.79768 0.99872 0.89298 0.90597 0.90178 0.83568 0.73905 0.81574 0.89800 0.90907 0.90095 0.91022 0.90163 0.94199 0.87735 0.95660 0.93313 0.87707 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.36 36.00 0.34 -0.94 16 2 C 0.02 0.24 5.94 -103.96 -0.62 -0.38 16 3 C -0.19 -1.78 9.74 -39.34 -0.38 -2.16 16 4 C 0.33 3.32 7.74 -16.96 -0.13 3.19 16 5 O -0.48 -4.01 13.55 -18.19 -0.25 -4.25 16 6 N -0.51 -5.87 10.37 -12.97 -0.13 -6.00 16 7 C 0.16 1.79 8.97 -17.14 -0.15 1.64 16 8 C -0.19 -2.31 4.59 -104.82 -0.48 -2.79 16 9 C 0.56 8.70 6.15 -12.44 -0.08 8.63 16 10 O -0.52 -10.02 15.47 5.30 0.08 -9.94 16 11 N -0.60 -8.98 2.98 -174.75 -0.52 -9.50 16 12 C 0.11 1.27 5.48 -4.38 -0.02 1.24 16 13 C -0.12 -1.65 5.72 -27.37 -0.16 -1.81 16 14 C 0.08 1.35 2.50 -26.64 -0.07 1.29 16 15 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 16 O -0.39 -7.50 10.49 -35.23 -0.37 -7.87 16 17 C 0.04 0.71 6.96 37.26 0.26 0.97 16 18 C 0.14 3.30 5.38 -3.47 -0.02 3.28 16 19 N -0.59 -14.24 3.04 -164.36 -0.50 -14.74 16 20 C -0.26 -6.82 8.74 -15.06 -0.13 -6.95 16 21 H 0.07 1.73 6.49 -52.49 -0.34 1.39 16 22 C 0.02 0.42 5.34 -17.43 -0.09 0.33 16 23 N -0.90 -25.19 10.70 55.49 0.59 -24.59 16 24 Si 0.90 21.23 29.56 -169.99 -5.02 16.21 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 C 0.14 2.83 3.00 -67.53 -0.20 2.63 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 C 0.12 2.30 4.61 -3.71 -0.02 2.28 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.59 8.13 -51.93 -0.42 0.17 16 33 H 0.08 1.03 6.71 -51.93 -0.35 0.68 16 34 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.40 1.22 9.06 45.56 0.41 1.63 16 36 H 0.17 1.56 7.75 -52.49 -0.41 1.15 16 37 H 0.08 0.82 5.42 -51.93 -0.28 0.54 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.10 2.68 6.16 -51.93 -0.32 2.36 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.10 2.26 6.83 -51.93 -0.35 1.90 16 47 H 0.08 1.38 7.38 -51.93 -0.38 1.00 16 LS Contribution 371.29 15.07 5.60 5.60 Total: -1.00 -32.89 371.29 -8.29 -41.18 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.81 Total: 3.47 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -1.96 Total: 10.46 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.56 Total: -54.84 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.53 Total: -22.06 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.89 -8.29 -41.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074340983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.891 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds