Wall clock time and date at job start Wed Apr 1 2020 05:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37994 * 120.82305 * 2 1 4 4 C 1.39122 * 119.26507 * 180.27414 * 3 2 1 5 5 O 1.35498 * 119.52755 * 179.71887 * 4 3 2 6 6 N 1.32436 * 120.95119 * 359.69703 * 4 3 2 7 7 C 1.31641 * 121.79956 * 0.02562 * 6 4 3 8 8 C 1.39563 * 120.62509 * 359.97438 * 7 6 4 9 9 C 1.47613 * 120.49787 * 179.97438 * 8 7 6 10 10 O 1.21579 * 119.99799 * 126.16689 * 9 8 7 11 11 N 1.34773 * 120.00119 * 306.15800 * 9 8 7 12 12 C 1.46839 * 120.40972 * 354.13525 * 11 9 8 13 13 C 1.51964 * 109.37557 * 231.92517 * 12 11 9 14 14 C 1.52788 * 109.55734 * 306.69320 * 13 12 11 15 15 H 1.08999 * 108.96101 * 302.42992 * 14 13 12 16 16 O 1.42612 * 111.10950 * 181.89576 * 14 13 12 17 17 C 1.43153 * 113.62796 * 176.38621 * 16 14 13 18 18 C 1.53196 * 109.73731 * 61.69058 * 17 16 14 19 19 N 1.47352 * 108.80194 * 308.78317 * 18 17 16 20 20 C 1.36929 * 121.30574 * 230.21866 * 19 18 17 21 21 H 1.08001 * 120.00018 * 145.05886 * 20 19 18 22 22 C 1.38811 * 120.00506 * 325.06884 * 20 19 18 23 23 N 1.31626 * 119.99505 * 4.38815 * 22 20 19 24 24 Si 1.86799 * 120.00408 * 184.39474 * 22 20 19 25 25 H 1.48494 * 109.47236 * 89.99304 * 24 22 20 26 26 H 1.48502 * 109.47102 * 209.99640 * 24 22 20 27 27 H 1.48506 * 109.46658 * 329.99461 * 24 22 20 28 28 C 1.46878 * 117.38749 * 50.24403 * 19 18 17 29 29 H 1.09004 * 109.65411 * 67.64788 * 28 19 18 30 30 C 1.47129 * 120.41108 * 174.15008 * 11 9 8 31 31 H 1.09002 * 109.47069 * 275.15906 * 1 2 3 32 32 H 1.09000 * 109.47225 * 35.15929 * 1 2 3 33 33 H 1.09000 * 109.47266 * 155.16216 * 1 2 3 34 34 H 1.08000 * 120.37108 * 359.97156 * 3 2 1 35 35 H 0.96698 * 114.00105 * 269.97897 * 5 4 3 36 36 H 1.08000 * 119.68719 * 180.02562 * 7 6 4 37 37 H 1.08995 * 109.50876 * 352.19775 * 12 11 9 38 38 H 1.09004 * 109.51099 * 112.33620 * 12 11 9 39 39 H 1.09000 * 109.72940 * 186.34577 * 13 12 11 40 40 H 1.08997 * 108.69447 * 66.40687 * 13 12 11 41 41 H 1.08995 * 109.42282 * 181.77154 * 17 16 14 42 42 H 1.09004 * 109.42654 * 301.60678 * 17 16 14 43 43 H 1.08997 * 109.57633 * 188.98865 * 18 17 16 44 44 H 1.08999 * 109.57710 * 68.58392 * 18 17 16 45 45 H 0.96998 * 119.99353 * 180.02562 * 23 22 20 46 46 H 1.08995 * 109.72576 * 7.08814 * 30 11 9 47 47 H 1.08997 * 109.72918 * 246.41442 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1850 0.0000 4 6 3.6047 1.1472 -0.0058 5 8 4.3043 2.3076 -0.0116 6 7 4.2547 -0.0067 -0.0053 7 6 3.6204 -1.1602 0.0002 8 6 2.2255 -1.2044 0.0062 9 6 1.5171 -2.4995 0.0118 10 8 0.6839 -2.7329 0.8658 11 7 1.7938 -3.4230 -0.9300 12 6 2.7019 -3.1046 -2.0391 13 6 2.0277 -3.4477 -3.3571 14 6 1.5415 -4.8957 -3.3211 15 1 2.3904 -5.5495 -3.1212 16 8 0.9409 -5.2668 -4.5602 17 6 0.5391 -6.6397 -4.6146 18 6 -0.5167 -6.9128 -3.5387 19 7 -0.0136 -6.4211 -2.2440 20 6 -0.0313 -7.2126 -1.1268 21 1 0.7632 -7.1376 -0.3991 22 6 -1.0704 -8.1116 -0.9294 23 7 -1.9924 -8.2655 -1.8561 24 14 -1.1605 -9.1028 0.6514 25 1 -1.9483 -8.3524 1.6620 26 1 -1.8167 -10.4072 0.3810 27 1 0.2121 -9.3368 1.1677 28 6 0.5071 -5.0485 -2.1987 29 1 -0.3083 -4.3418 -2.3528 30 6 1.1896 -4.7626 -0.8596 31 1 -0.3633 0.0924 1.0235 32 1 -0.3634 0.8402 -0.5918 33 1 -0.3634 -0.9326 -0.4317 34 1 1.6936 2.1314 -0.0005 35 1 4.5039 2.6421 -0.8967 36 1 4.1848 -2.0809 0.0008 37 1 2.9459 -2.0425 -2.0163 38 1 3.6156 -3.6909 -1.9413 39 1 2.7351 -3.3202 -4.1764 40 1 1.1776 -2.7804 -3.4988 41 1 0.1199 -6.8560 -5.5972 42 1 1.4057 -7.2782 -4.4426 43 1 -0.7041 -7.9847 -3.4747 44 1 -1.4403 -6.3930 -3.7932 45 1 -2.7187 -8.8935 -1.7180 46 1 0.4524 -4.7920 -0.0573 47 1 1.9645 -5.5066 -0.6755 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074340983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:53 Heat of formation + Delta-G solvation = -72.519198 kcal Electronic energy + Delta-G solvation = -31889.183823 eV Core-core repulsion = 27651.359280 eV Total energy + Delta-G solvation = -4237.824543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.18904 -41.07770 -39.97450 -38.06004 -37.54433 -36.52523 -34.96521 -33.65660 -33.10370 -31.93869 -31.11235 -29.19980 -28.76893 -26.94149 -25.61267 -25.04191 -23.84870 -23.25018 -22.78157 -21.49267 -20.58527 -19.40430 -18.88449 -18.66748 -18.10808 -17.45938 -17.12073 -16.93353 -16.78009 -16.42645 -16.08943 -15.73516 -15.52066 -15.34627 -15.19676 -14.84048 -14.66793 -14.62097 -14.17821 -14.07412 -14.02827 -13.78578 -13.55014 -13.31100 -13.14120 -12.97762 -12.93564 -12.72925 -12.67048 -12.41887 -12.30921 -12.04117 -11.96474 -11.78856 -11.29206 -11.27477 -10.68410 -10.65763 -10.57050 -10.50077 -10.02375 -9.77790 -8.63523 -7.93138 -5.49943 -0.41943 0.04578 1.42777 1.44621 1.46848 1.52841 1.76006 2.41757 2.44922 2.62068 2.81357 3.23699 3.29201 3.43644 3.51465 3.54895 3.80365 3.89960 3.94144 4.06036 4.16222 4.18988 4.23752 4.34672 4.39384 4.47314 4.53710 4.56801 4.58194 4.62880 4.64323 4.68360 4.79228 4.86691 4.95862 5.00164 5.07592 5.14624 5.17562 5.27941 5.37005 5.40558 5.60141 5.62897 6.25218 6.28057 6.38224 6.55512 6.78903 6.96704 7.06870 7.70202 8.28994 9.11425 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.003233 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.765774 B = 8659.303030 C = 9701.470614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.016 3.984 3 C -0.181 4.181 4 C 0.331 3.669 5 O -0.486 6.486 6 N -0.523 5.523 7 C 0.169 3.831 8 C -0.203 4.203 9 C 0.566 3.434 10 O -0.571 6.571 11 N -0.600 5.600 12 C 0.110 3.890 13 C -0.116 4.116 14 C 0.081 3.919 15 H 0.059 0.941 16 O -0.393 6.393 17 C 0.050 3.950 18 C 0.145 3.855 19 N -0.607 5.607 20 C -0.263 4.263 21 H 0.074 0.926 22 C -0.039 4.039 23 N -0.931 5.931 24 Si 0.962 3.038 25 H -0.292 1.292 26 H -0.290 1.290 27 H -0.264 1.264 28 C 0.136 3.864 29 H 0.004 0.996 30 C 0.139 3.861 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.048 0.952 34 H 0.176 0.824 35 H 0.426 0.574 36 H 0.183 0.817 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.049 0.951 43 H 0.079 0.921 44 H -0.007 1.007 45 H 0.252 0.748 46 H 0.066 0.934 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.150 18.972 -3.375 23.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.008 3.992 3 C -0.202 4.202 4 C 0.153 3.847 5 O -0.298 6.298 6 N -0.242 5.242 7 C 0.011 3.989 8 C -0.209 4.209 9 C 0.355 3.645 10 O -0.451 6.451 11 N -0.333 5.333 12 C -0.012 4.012 13 C -0.154 4.154 14 C 0.021 3.979 15 H 0.077 0.923 16 O -0.312 6.312 17 C -0.028 4.028 18 C 0.020 3.980 19 N -0.332 5.332 20 C -0.392 4.392 21 H 0.092 0.908 22 C -0.235 4.235 23 N -0.577 5.577 24 Si 0.790 3.210 25 H -0.219 1.219 26 H -0.216 1.216 27 H -0.188 1.188 28 C 0.029 3.971 29 H 0.022 0.978 30 C 0.016 3.984 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.067 0.933 34 H 0.193 0.807 35 H 0.289 0.711 36 H 0.200 0.800 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.133 0.867 40 H 0.081 0.919 41 H 0.124 0.876 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.011 0.989 45 H 0.061 0.939 46 H 0.084 0.916 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.446 18.898 -2.500 23.328 hybrid contribution -1.780 -1.228 0.602 2.244 sum 11.666 17.670 -1.898 21.259 Atomic orbital electron populations 1.20913 0.89065 1.03589 1.04005 1.20393 0.97472 0.90999 0.90339 1.22100 0.93430 0.99764 1.04866 1.19508 0.87492 0.85404 0.92247 1.84686 1.75673 1.33212 1.36193 1.67268 1.42116 0.98610 1.16256 1.22881 0.89204 0.95978 0.90851 1.20728 0.96050 0.93143 1.10931 1.18413 0.81398 0.83758 0.80964 1.90810 1.34927 1.79818 1.39507 1.48248 1.46675 1.12512 1.25820 1.21833 0.92497 1.03426 0.83396 1.21600 1.01823 0.93160 0.98848 1.22473 0.94028 0.97190 0.84170 0.92282 1.87746 1.80150 1.28104 1.35231 1.23221 0.97534 0.81922 1.00087 1.21396 0.92493 1.00149 0.83990 1.44203 1.73852 1.08754 1.06397 1.19366 1.03848 1.16291 0.99745 0.90817 1.26036 0.95370 1.02036 1.00061 1.70068 1.14844 1.38692 1.34048 0.85352 0.78242 0.77399 0.80010 1.21874 1.21631 1.18840 1.21404 0.94232 0.86727 0.94735 0.97837 1.21335 0.97452 0.82176 0.97412 0.89660 0.87565 0.93314 0.80697 0.71073 0.80038 0.87173 0.88122 0.86721 0.91913 0.87558 0.93262 0.90284 0.98874 0.93876 0.91580 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 9.36 71.23 0.67 -1.75 16 2 C 0.02 0.33 5.94 -19.43 -0.12 0.21 16 3 C -0.18 -2.77 9.74 22.42 0.22 -2.55 16 4 C 0.33 5.61 7.74 84.81 0.66 6.27 16 5 O -0.49 -6.23 13.55 -88.00 -1.19 -7.42 16 6 N -0.52 -10.45 10.37 -307.80 -3.19 -13.64 16 7 C 0.17 3.32 8.97 85.04 0.76 4.08 16 8 C -0.20 -4.76 4.59 -19.99 -0.09 -4.85 16 9 C 0.57 17.61 6.15 86.72 0.53 18.14 16 10 O -0.57 -23.06 15.47 -3.96 -0.06 -23.12 16 11 N -0.60 -17.63 2.98 -825.05 -2.46 -20.09 16 12 C 0.11 2.21 5.48 85.97 0.47 2.68 16 13 C -0.12 -2.74 5.72 30.18 0.17 -2.57 16 14 C 0.08 2.71 2.50 30.66 0.08 2.79 16 15 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 16 O -0.39 -14.59 10.49 -148.98 -1.56 -16.15 16 17 C 0.05 1.90 6.96 72.05 0.50 2.40 16 18 C 0.15 7.07 5.38 86.28 0.46 7.53 16 19 N -0.61 -30.45 3.04 -673.91 -2.05 -32.50 16 20 C -0.26 -14.13 8.74 84.03 0.73 -13.39 16 21 H 0.07 3.81 6.49 -2.91 -0.02 3.79 16 22 C -0.04 -2.15 5.34 84.86 0.45 -1.70 16 23 N -0.93 -54.47 10.70 21.65 0.23 -54.23 16 24 Si 0.96 44.93 29.56 68.60 2.03 46.96 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 26 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 27 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 28 C 0.14 5.74 3.00 45.05 0.14 5.88 16 29 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 30 C 0.14 5.31 4.61 86.25 0.40 5.71 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.11 1.43 8.13 -2.39 -0.02 1.41 16 33 H 0.05 1.30 6.71 -2.39 -0.02 1.28 16 34 H 0.18 1.62 8.06 -2.91 -0.02 1.59 16 35 H 0.43 0.82 9.06 -74.06 -0.67 0.15 16 36 H 0.18 2.86 7.75 -2.91 -0.02 2.83 16 37 H 0.11 1.74 5.42 -2.39 -0.01 1.73 16 38 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 42 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.08 4.25 6.16 -2.39 -0.01 4.23 16 44 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 45 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 46 H 0.07 3.03 6.83 -2.39 -0.02 3.02 16 47 H 0.08 2.94 7.38 -2.39 -0.02 2.92 16 Total: -1.00 -75.92 371.29 -1.88 -77.80 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.34 Total: 13.51 kcal Atomic # 6 Polarization: 22.85 SS G_CDS: 6.04 Total: 28.89 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -7.47 Total: -120.47 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -2.82 Total: -46.69 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -75.92 -1.88 -77.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074340983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.284 kcal (2) G-P(sol) polarization free energy of solvation -75.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds