Wall clock time and date at job start Wed Apr 1 2020 04:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38362 * 119.40867 * 2 1 4 4 C 1.38329 * 119.45991 * 180.02562 * 3 2 1 5 5 C 1.39992 * 118.35005 * 0.02562 * 4 3 2 6 6 C 1.47521 * 120.59649 * 180.02562 * 5 4 3 7 7 O 1.21599 * 120.00036 * 149.98377 * 6 5 4 8 8 N 1.34776 * 120.00351 * 329.98734 * 6 5 4 9 9 C 1.46981 * 120.72187 * 175.08090 * 8 6 5 10 10 C 1.53158 * 108.44358 * 125.73233 * 9 8 6 11 11 C 1.52507 * 109.79582 * 54.52452 * 10 9 8 12 12 H 1.08996 * 108.93766 * 180.32911 * 11 10 9 13 13 O 1.42695 * 110.62060 * 61.29351 * 11 10 9 14 14 C 1.43083 * 113.86945 * 174.64705 * 13 11 10 15 15 C 1.53230 * 109.44739 * 61.64585 * 14 13 11 16 16 N 1.47169 * 108.70006 * 308.42196 * 15 14 13 17 17 C 1.36936 * 121.22238 * 230.91645 * 16 15 14 18 18 H 1.07997 * 120.00472 * 153.29405 * 17 16 15 19 19 C 1.38809 * 119.99835 * 333.29458 * 17 16 15 20 20 N 1.31621 * 120.00354 * 344.42885 * 19 17 16 21 21 Si 1.86805 * 120.00149 * 164.43029 * 19 17 16 22 22 H 1.48495 * 109.47217 * 89.99888 * 21 19 17 23 23 H 1.48497 * 109.47262 * 210.00373 * 21 19 17 24 24 H 1.48503 * 109.47019 * 330.00087 * 21 19 17 25 25 C 1.47590 * 117.55637 * 50.93581 * 16 15 14 26 26 H 1.08999 * 111.16852 * 187.20536 * 25 16 15 27 27 C 1.46787 * 120.71861 * 355.35456 * 8 6 5 28 28 C 1.40278 * 118.80415 * 0.27378 * 5 4 3 29 29 O 1.35430 * 119.79673 * 179.72791 * 28 5 4 30 30 N 1.31878 * 119.40943 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47162 * 89.99972 * 1 2 3 32 32 H 1.08998 * 109.47214 * 210.00235 * 1 2 3 33 33 H 1.09006 * 109.47032 * 330.00069 * 1 2 3 34 34 H 1.08004 * 120.26855 * 0.02562 * 3 2 1 35 35 H 1.08003 * 120.82713 * 179.97438 * 4 3 2 36 36 H 1.08992 * 109.64351 * 245.42305 * 9 8 6 37 37 H 1.09003 * 109.63832 * 6.05349 * 9 8 6 38 38 H 1.08998 * 109.42156 * 294.42623 * 10 9 8 39 39 H 1.08998 * 109.41896 * 174.62688 * 10 9 8 40 40 H 1.08995 * 109.47333 * 181.64221 * 14 13 11 41 41 H 1.08998 * 109.47031 * 301.65623 * 14 13 11 42 42 H 1.09004 * 109.59277 * 68.18113 * 15 14 13 43 43 H 1.08999 * 109.59668 * 188.49356 * 15 14 13 44 44 H 0.96996 * 120.00265 * 179.97438 * 20 19 17 45 45 H 1.09008 * 109.51769 * 353.92756 * 27 8 6 46 46 H 1.09010 * 109.51986 * 114.10298 * 27 8 6 47 47 H 0.96702 * 113.99536 * 90.00094 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.2355 -0.0249 -0.0016 6 6 5.7097 -0.0814 -0.0017 7 8 6.2823 -1.0163 0.5243 8 7 6.4218 0.9032 -0.5846 9 6 7.8892 0.9191 -0.5011 10 6 8.4544 1.0064 -1.9219 11 6 7.8548 2.2088 -2.6434 12 1 8.2615 2.2542 -3.6536 13 8 8.1918 3.4197 -1.9677 14 6 7.7665 4.6022 -2.6520 15 6 6.2391 4.5993 -2.7743 16 7 5.8144 3.3140 -3.3519 17 6 4.9710 3.2642 -4.4295 18 1 4.9991 2.4169 -5.0986 19 6 4.0798 4.3028 -4.6620 20 7 3.8210 5.1736 -3.7095 21 14 3.2477 4.4646 -6.3266 22 1 1.9728 3.7032 -6.3188 23 1 2.9674 5.8965 -6.6028 24 1 4.1414 3.9228 -7.3815 25 6 6.3305 2.0808 -2.7267 26 1 6.0563 1.2003 -3.3078 27 6 5.7485 1.9862 -1.3115 28 6 3.4758 -1.2041 -0.0080 29 8 4.0992 -2.4063 -0.0147 30 7 2.1546 -1.1488 -0.0005 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6411 2.1376 0.0004 35 1 4.1223 2.1345 -0.0010 36 1 8.2140 1.7846 0.0762 37 1 8.2389 0.0039 -0.0234 38 1 8.2062 0.0959 -2.4673 39 1 9.5379 1.1154 -1.8748 40 1 8.0845 5.4808 -2.0909 41 1 8.2107 4.6258 -3.6470 42 1 5.7931 4.7218 -1.7873 43 1 5.9227 5.4166 -3.4225 44 1 3.1986 5.8995 -3.8721 45 1 4.6804 1.7765 -1.3702 46 1 5.9072 2.9295 -0.7887 47 1 4.2804 -2.7603 0.8668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074345363.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:41 Heat of formation + Delta-G solvation = -31.310641 kcal Electronic energy + Delta-G solvation = -32616.044207 eV Core-core repulsion = 28380.006601 eV Total energy + Delta-G solvation = -4236.037606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.01784 -39.72473 -38.42776 -37.19011 -35.64205 -34.78338 -33.53140 -31.62072 -31.59803 -31.48844 -29.57823 -27.98942 -27.46283 -25.06098 -24.16787 -23.44304 -22.83393 -22.53341 -21.44555 -19.88621 -18.82093 -18.34779 -17.30020 -16.97228 -16.65083 -15.86713 -15.76906 -15.49813 -15.29153 -15.01602 -14.77410 -14.48284 -14.21204 -13.98139 -13.76449 -13.67676 -13.43546 -13.06644 -12.74713 -12.58991 -12.48273 -12.37853 -12.17988 -12.04031 -11.87609 -11.58565 -11.36328 -11.17157 -11.01890 -10.86102 -10.67540 -10.41006 -10.30451 -10.07804 -9.97736 -9.72596 -9.64844 -9.26074 -9.05388 -8.79784 -8.69260 -8.30923 -6.87274 -5.98126 -3.42858 0.66853 1.15807 2.88642 3.16311 3.26141 3.33810 3.36215 3.51943 3.79591 4.27277 4.30601 4.46478 4.65824 4.73291 4.97656 5.07356 5.12815 5.20306 5.29702 5.30188 5.36971 5.50544 5.51496 5.54857 5.59233 5.66765 5.78117 5.85450 5.89760 5.96275 6.00018 6.04772 6.08414 6.14044 6.19715 6.25904 6.34420 6.44150 6.45642 6.58518 6.80181 6.97297 7.36465 7.53721 7.59183 7.63021 7.82212 7.87787 8.18377 8.33463 8.97381 9.58126 10.15393 11.08958 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008748 B = 0.005133 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.028158 B = 5453.969035 C = 7808.838257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.171 3.829 3 C -0.186 4.186 4 C -0.025 4.025 5 C -0.208 4.208 6 C 0.571 3.429 7 O -0.545 6.545 8 N -0.598 5.598 9 C 0.120 3.880 10 C -0.123 4.123 11 C 0.081 3.919 12 H 0.052 0.948 13 O -0.387 6.387 14 C 0.038 3.962 15 C 0.138 3.862 16 N -0.583 5.583 17 C -0.256 4.256 18 H 0.068 0.932 19 C 0.008 3.992 20 N -0.901 5.901 21 Si 0.904 3.096 22 H -0.286 1.286 23 H -0.288 1.288 24 H -0.279 1.279 25 C 0.134 3.866 26 H 0.075 0.925 27 C 0.077 3.923 28 C 0.368 3.632 29 O -0.468 6.468 30 N -0.512 5.512 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.146 0.854 35 H 0.159 0.841 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.041 0.959 42 H 0.028 0.972 43 H 0.097 0.903 44 H 0.256 0.744 45 H 0.097 0.903 46 H 0.076 0.924 47 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.604 -5.048 8.478 9.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.033 3.967 3 C -0.206 4.206 4 C -0.050 4.050 5 C -0.215 4.215 6 C 0.359 3.641 7 O -0.424 6.424 8 N -0.331 5.331 9 C -0.002 4.002 10 C -0.161 4.161 11 C 0.021 3.979 12 H 0.070 0.930 13 O -0.307 6.307 14 C -0.040 4.040 15 C 0.013 3.987 16 N -0.306 5.306 17 C -0.385 4.385 18 H 0.086 0.914 19 C -0.191 4.191 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.212 1.212 23 H -0.214 1.214 24 H -0.204 1.204 25 C 0.025 3.975 26 H 0.094 0.906 27 C -0.046 4.046 28 C 0.188 3.812 29 O -0.276 6.276 30 N -0.233 5.233 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.164 0.836 35 H 0.177 0.823 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.115 0.885 44 H 0.066 0.934 45 H 0.115 0.885 46 H 0.094 0.906 47 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 0.449 -6.113 8.283 10.305 hybrid contribution -0.161 1.051 -0.841 1.356 sum 0.288 -5.062 7.442 9.006 Atomic orbital electron populations 1.20810 0.88270 1.03650 1.03693 1.21231 0.96975 0.87236 0.91279 1.21967 0.94582 0.99683 1.04320 1.22236 0.94764 0.97850 0.90152 1.21003 0.94974 0.94423 1.11053 1.17816 0.85944 0.81844 0.78509 1.90707 1.71533 1.33325 1.46807 1.48121 1.07165 1.25293 1.52480 1.21513 0.78722 1.02926 0.97070 1.21798 1.00644 0.97318 0.96351 1.22243 0.95745 0.84862 0.95039 0.92972 1.87735 1.79809 1.13811 1.49303 1.23343 0.98387 0.86418 0.95873 1.21477 0.88718 0.90261 0.98274 1.44266 1.53843 0.98649 1.33819 1.19159 1.12355 1.06577 1.00381 0.91448 1.25027 0.96848 0.99359 0.97842 1.69985 1.36466 1.17237 1.30791 0.86281 0.79493 0.77123 0.83808 1.21243 1.21401 1.20406 1.21592 0.92045 0.92051 0.91765 0.90641 1.23169 0.98262 0.88976 0.94239 1.18994 0.86136 0.84768 0.91337 1.84660 1.76602 1.32222 1.34088 1.67073 1.09218 1.30454 1.16513 0.89738 0.90315 0.90151 0.83578 0.82332 0.90744 0.89294 0.90425 0.90354 0.90106 0.94080 0.95392 0.88465 0.93393 0.88500 0.90633 0.73583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.16 36.00 0.37 -0.68 16 2 C 0.17 2.31 6.78 -82.53 -0.56 1.76 16 3 C -0.19 -2.51 9.71 -39.50 -0.38 -2.89 16 4 C -0.02 -0.37 7.53 -38.89 -0.29 -0.66 16 5 C -0.21 -3.41 5.50 -104.69 -0.58 -3.99 16 6 C 0.57 9.91 7.36 -12.48 -0.09 9.82 16 7 O -0.54 -10.18 15.21 -13.66 -0.21 -10.39 16 8 N -0.60 -9.90 2.96 -174.01 -0.52 -10.42 16 9 C 0.12 1.78 6.27 -3.70 -0.02 1.76 16 10 C -0.12 -1.77 5.82 -26.90 -0.16 -1.92 16 11 C 0.08 1.40 2.73 -26.89 -0.07 1.32 16 12 H 0.05 0.94 8.11 -51.93 -0.42 0.52 16 13 O -0.39 -6.93 9.59 -35.23 -0.34 -7.26 16 14 C 0.04 0.68 6.97 37.28 0.26 0.94 16 15 C 0.14 2.96 4.92 -3.56 -0.02 2.95 16 16 N -0.58 -13.18 2.71 -163.88 -0.44 -13.63 16 17 C -0.26 -6.46 9.72 -15.06 -0.15 -6.60 16 18 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 19 C 0.01 0.21 4.99 -17.43 -0.09 0.13 16 20 N -0.90 -23.61 11.10 55.49 0.62 -23.00 16 21 Si 0.90 20.43 29.58 -169.99 -5.03 15.40 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 C 0.13 2.62 3.00 -67.08 -0.20 2.42 16 26 H 0.08 1.55 8.03 -51.93 -0.42 1.13 16 27 C 0.08 1.38 3.97 -3.73 -0.01 1.36 16 28 C 0.37 6.01 7.74 -16.61 -0.13 5.88 16 29 O -0.47 -7.27 12.09 -36.92 -0.45 -7.71 16 30 N -0.51 -8.01 10.28 -9.21 -0.09 -8.11 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 34 H 0.15 1.66 8.06 -52.48 -0.42 1.23 16 35 H 0.16 2.36 5.49 -52.48 -0.29 2.07 16 36 H 0.07 1.09 7.94 -51.93 -0.41 0.68 16 37 H 0.09 1.30 7.01 -51.93 -0.36 0.94 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 42 H 0.03 0.63 7.17 -51.93 -0.37 0.25 16 43 H 0.10 2.33 6.13 -51.93 -0.32 2.02 16 44 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 45 H 0.10 1.81 3.97 -51.92 -0.21 1.60 16 46 H 0.08 1.41 6.48 -51.92 -0.34 1.07 16 47 H 0.40 4.56 9.06 45.56 0.41 4.97 16 LS Contribution 368.54 15.07 5.55 5.55 Total: -1.00 -30.16 368.54 -8.68 -38.84 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.65 Total: 9.14 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: -2.13 Total: 11.58 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.44 Total: -55.15 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.99 Total: -25.36 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.16 -8.68 -38.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074345363.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.529 kcal (2) G-P(sol) polarization free energy of solvation -30.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds