Wall clock time and date at job start Wed Apr 1 2020 04:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38362 * 119.40867 * 2 1 4 4 C 1.38329 * 119.45991 * 180.02562 * 3 2 1 5 5 C 1.39992 * 118.35005 * 0.02562 * 4 3 2 6 6 C 1.47521 * 120.59649 * 180.02562 * 5 4 3 7 7 O 1.21599 * 120.00036 * 149.98377 * 6 5 4 8 8 N 1.34776 * 120.00351 * 329.98734 * 6 5 4 9 9 C 1.46981 * 120.72187 * 175.08090 * 8 6 5 10 10 C 1.53158 * 108.44358 * 125.73233 * 9 8 6 11 11 C 1.52507 * 109.79582 * 54.52452 * 10 9 8 12 12 H 1.08996 * 108.93766 * 180.32911 * 11 10 9 13 13 O 1.42695 * 110.62060 * 61.29351 * 11 10 9 14 14 C 1.43083 * 113.86945 * 174.64705 * 13 11 10 15 15 C 1.53230 * 109.44739 * 61.64585 * 14 13 11 16 16 N 1.47169 * 108.70006 * 308.42196 * 15 14 13 17 17 C 1.36936 * 121.22238 * 230.91645 * 16 15 14 18 18 H 1.07997 * 120.00472 * 153.29405 * 17 16 15 19 19 C 1.38809 * 119.99835 * 333.29458 * 17 16 15 20 20 N 1.31621 * 120.00354 * 344.42885 * 19 17 16 21 21 Si 1.86805 * 120.00149 * 164.43029 * 19 17 16 22 22 H 1.48495 * 109.47217 * 89.99888 * 21 19 17 23 23 H 1.48497 * 109.47262 * 210.00373 * 21 19 17 24 24 H 1.48503 * 109.47019 * 330.00087 * 21 19 17 25 25 C 1.47590 * 117.55637 * 50.93581 * 16 15 14 26 26 H 1.08999 * 111.16852 * 187.20536 * 25 16 15 27 27 C 1.46787 * 120.71861 * 355.35456 * 8 6 5 28 28 C 1.40278 * 118.80415 * 0.27378 * 5 4 3 29 29 O 1.35430 * 119.79673 * 179.72791 * 28 5 4 30 30 N 1.31878 * 119.40943 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47162 * 89.99972 * 1 2 3 32 32 H 1.08998 * 109.47214 * 210.00235 * 1 2 3 33 33 H 1.09006 * 109.47032 * 330.00069 * 1 2 3 34 34 H 1.08004 * 120.26855 * 0.02562 * 3 2 1 35 35 H 1.08003 * 120.82713 * 179.97438 * 4 3 2 36 36 H 1.08992 * 109.64351 * 245.42305 * 9 8 6 37 37 H 1.09003 * 109.63832 * 6.05349 * 9 8 6 38 38 H 1.08998 * 109.42156 * 294.42623 * 10 9 8 39 39 H 1.08998 * 109.41896 * 174.62688 * 10 9 8 40 40 H 1.08995 * 109.47333 * 181.64221 * 14 13 11 41 41 H 1.08998 * 109.47031 * 301.65623 * 14 13 11 42 42 H 1.09004 * 109.59277 * 68.18113 * 15 14 13 43 43 H 1.08999 * 109.59668 * 188.49356 * 15 14 13 44 44 H 0.96996 * 120.00265 * 179.97438 * 20 19 17 45 45 H 1.09008 * 109.51769 * 353.92756 * 27 8 6 46 46 H 1.09010 * 109.51986 * 114.10298 * 27 8 6 47 47 H 0.96702 * 113.99536 * 90.00094 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.2355 -0.0249 -0.0016 6 6 5.7097 -0.0814 -0.0017 7 8 6.2823 -1.0163 0.5243 8 7 6.4218 0.9032 -0.5846 9 6 7.8892 0.9191 -0.5011 10 6 8.4544 1.0064 -1.9219 11 6 7.8548 2.2088 -2.6434 12 1 8.2615 2.2542 -3.6536 13 8 8.1918 3.4197 -1.9677 14 6 7.7665 4.6022 -2.6520 15 6 6.2391 4.5993 -2.7743 16 7 5.8144 3.3140 -3.3519 17 6 4.9710 3.2642 -4.4295 18 1 4.9991 2.4169 -5.0986 19 6 4.0798 4.3028 -4.6620 20 7 3.8210 5.1736 -3.7095 21 14 3.2477 4.4646 -6.3266 22 1 1.9728 3.7032 -6.3188 23 1 2.9674 5.8965 -6.6028 24 1 4.1414 3.9228 -7.3815 25 6 6.3305 2.0808 -2.7267 26 1 6.0563 1.2003 -3.3078 27 6 5.7485 1.9862 -1.3115 28 6 3.4758 -1.2041 -0.0080 29 8 4.0992 -2.4063 -0.0147 30 7 2.1546 -1.1488 -0.0005 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6411 2.1376 0.0004 35 1 4.1223 2.1345 -0.0010 36 1 8.2140 1.7846 0.0762 37 1 8.2389 0.0039 -0.0234 38 1 8.2062 0.0959 -2.4673 39 1 9.5379 1.1154 -1.8748 40 1 8.0845 5.4808 -2.0909 41 1 8.2107 4.6258 -3.6470 42 1 5.7931 4.7218 -1.7873 43 1 5.9227 5.4166 -3.4225 44 1 3.1986 5.8995 -3.8721 45 1 4.6804 1.7765 -1.3702 46 1 5.9072 2.9295 -0.7887 47 1 4.2804 -2.7603 0.8668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074345363.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:40 Heat of formation + Delta-G solvation = -52.429359 kcal Electronic energy + Delta-G solvation = -32616.959983 eV Core-core repulsion = 28380.006601 eV Total energy + Delta-G solvation = -4236.953382 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.26707 -41.07057 -39.82602 -38.37058 -37.03648 -36.47447 -34.74323 -33.37189 -32.86717 -32.64850 -31.05145 -29.26430 -28.96801 -26.39776 -25.73879 -24.86301 -24.22915 -23.72439 -22.83637 -21.32726 -20.18264 -19.57130 -18.90230 -18.44327 -17.93177 -17.19045 -17.08831 -17.03635 -16.79602 -16.39308 -16.20145 -15.91978 -15.62224 -15.25729 -15.20950 -14.89612 -14.76433 -14.51504 -14.18214 -13.86139 -13.77123 -13.58405 -13.38059 -13.11263 -13.10466 -12.98985 -12.83336 -12.69220 -12.55219 -12.47483 -12.27833 -12.12729 -11.88922 -11.63736 -11.32635 -11.20891 -10.90193 -10.72757 -10.54150 -10.41653 -9.96165 -9.70253 -8.67718 -7.90352 -5.37216 -0.50065 -0.00087 1.44871 1.48584 1.55265 1.59306 1.87304 2.39422 2.46553 2.62500 2.87678 3.18707 3.24959 3.47958 3.60115 3.61521 3.76909 3.87356 4.00578 4.08818 4.13512 4.22323 4.23196 4.37489 4.43384 4.48340 4.54487 4.61370 4.63603 4.77219 4.79279 4.84189 4.87132 4.90141 4.91606 4.96053 5.00936 5.08377 5.19457 5.28274 5.42761 5.47469 5.58526 5.63755 6.22756 6.28437 6.36977 6.47549 6.75250 6.98064 7.07858 7.72403 8.27325 9.13628 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008748 B = 0.005133 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.028158 B = 5453.969035 C = 7808.838257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.170 3.830 3 C -0.186 4.186 4 C -0.030 4.030 5 C -0.228 4.228 6 C 0.570 3.430 7 O -0.561 6.561 8 N -0.597 5.597 9 C 0.119 3.881 10 C -0.114 4.114 11 C 0.085 3.915 12 H 0.046 0.954 13 O -0.383 6.383 14 C 0.047 3.953 15 C 0.145 3.855 16 N -0.596 5.596 17 C -0.266 4.266 18 H 0.059 0.941 19 C -0.031 4.031 20 N -0.921 5.921 21 Si 0.957 3.043 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.277 1.277 25 C 0.130 3.870 26 H 0.060 0.940 27 C 0.096 3.904 28 C 0.358 3.642 29 O -0.480 6.480 30 N -0.527 5.527 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.170 0.830 35 H 0.156 0.844 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.041 0.959 42 H 0.015 0.985 43 H 0.070 0.930 44 H 0.253 0.747 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.672 -5.067 8.822 10.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.032 3.968 3 C -0.206 4.206 4 C -0.055 4.055 5 C -0.235 4.235 6 C 0.358 3.642 7 O -0.441 6.441 8 N -0.328 5.328 9 C -0.003 4.003 10 C -0.152 4.152 11 C 0.026 3.974 12 H 0.064 0.936 13 O -0.302 6.302 14 C -0.030 4.030 15 C 0.020 3.980 16 N -0.319 5.319 17 C -0.395 4.395 18 H 0.077 0.923 19 C -0.228 4.228 20 N -0.566 5.566 21 Si 0.786 3.214 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.203 1.203 25 C 0.022 3.978 26 H 0.079 0.921 27 C -0.028 4.028 28 C 0.178 3.822 29 O -0.290 6.290 30 N -0.248 5.248 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.125 0.875 34 H 0.187 0.813 35 H 0.173 0.827 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.059 0.941 42 H 0.033 0.967 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.106 0.894 46 H 0.087 0.913 47 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 0.546 -6.150 8.646 10.625 hybrid contribution -0.222 1.019 -0.929 1.396 sum 0.323 -5.132 7.717 9.273 Atomic orbital electron populations 1.20951 0.85357 1.05370 1.04526 1.21912 0.98818 0.86622 0.89436 1.22274 0.94049 1.00828 1.03424 1.22271 0.95629 0.97258 0.90329 1.20993 0.94550 0.95085 1.12830 1.17985 0.86435 0.81583 0.78148 1.90684 1.72002 1.33843 1.47600 1.48105 1.07923 1.24726 1.52087 1.21648 0.77567 1.03524 0.97529 1.21778 1.02078 0.95820 0.95514 1.22225 0.93982 0.85806 0.95411 0.93552 1.87751 1.79369 1.13803 1.49294 1.23235 0.95607 0.87596 0.96600 1.21323 0.91047 0.89009 0.96608 1.44374 1.53785 0.99985 1.33803 1.19314 1.12633 1.06346 1.01255 0.92305 1.25572 0.97634 0.99365 1.00254 1.70094 1.37008 1.17539 1.31914 0.85444 0.78435 0.76698 0.80826 1.21358 1.21502 1.20266 1.21685 0.93737 0.90300 0.92101 0.92149 1.22800 0.97779 0.89016 0.93242 1.19139 0.86593 0.84885 0.91536 1.84607 1.76697 1.32120 1.35575 1.67177 1.08872 1.31495 1.17264 0.89081 0.89604 0.87500 0.81262 0.82659 0.90089 0.88691 0.90130 0.87569 0.87315 0.94095 0.96730 0.91198 0.93738 0.89372 0.91291 0.71889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 10.16 71.24 0.72 -1.07 16 2 C 0.17 4.38 6.78 42.58 0.29 4.66 16 3 C -0.19 -4.83 9.71 22.32 0.22 -4.61 16 4 C -0.03 -0.89 7.53 22.72 0.17 -0.72 16 5 C -0.23 -7.50 5.50 -19.91 -0.11 -7.61 16 6 C 0.57 19.69 7.36 86.69 0.64 20.33 16 7 O -0.56 -20.76 15.21 14.08 0.21 -20.55 16 8 N -0.60 -19.42 2.96 -822.71 -2.44 -21.86 16 9 C 0.12 3.33 6.27 86.34 0.54 3.87 16 10 C -0.11 -3.03 5.82 30.48 0.18 -2.86 16 11 C 0.09 2.84 2.73 30.49 0.08 2.92 16 12 H 0.05 1.62 8.11 -2.39 -0.02 1.60 16 13 O -0.38 -12.98 9.59 -148.98 -1.43 -14.41 16 14 C 0.05 1.65 6.97 72.06 0.50 2.15 16 15 C 0.15 6.27 4.92 86.33 0.42 6.69 16 16 N -0.60 -27.19 2.71 -672.40 -1.82 -29.01 16 17 C -0.27 -13.59 9.72 84.03 0.82 -12.77 16 18 H 0.06 3.05 7.88 -2.91 -0.02 3.02 16 19 C -0.03 -1.60 4.99 84.86 0.42 -1.18 16 20 N -0.92 -48.75 11.10 21.65 0.24 -48.51 16 21 Si 0.96 42.14 29.58 68.60 2.03 44.17 16 22 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 25 C 0.13 5.06 3.00 44.95 0.13 5.19 16 26 H 0.06 2.51 8.03 -2.39 -0.02 2.50 16 27 C 0.10 3.42 3.97 86.43 0.34 3.76 16 28 C 0.36 11.69 7.74 85.13 0.66 12.35 16 29 O -0.48 -14.93 12.09 -69.14 -0.84 -15.76 16 30 N -0.53 -16.16 10.28 -296.05 -3.04 -19.21 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.11 1.27 8.07 -2.38 -0.02 1.25 16 34 H 0.17 3.51 8.06 -2.91 -0.02 3.48 16 35 H 0.16 4.68 5.49 -2.91 -0.02 4.66 16 36 H 0.08 2.19 7.94 -2.39 -0.02 2.18 16 37 H 0.09 2.61 7.01 -2.39 -0.02 2.59 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.04 1.44 8.13 -2.39 -0.02 1.42 16 42 H 0.01 0.66 7.17 -2.38 -0.02 0.64 16 43 H 0.07 3.41 6.13 -2.39 -0.01 3.39 16 44 H 0.25 13.07 8.31 -92.71 -0.77 12.30 16 45 H 0.09 3.34 3.97 -2.38 -0.01 3.33 16 46 H 0.07 2.57 6.48 -2.38 -0.02 2.55 16 47 H 0.42 9.48 9.06 -74.06 -0.67 8.81 16 Total: -1.00 -64.35 368.54 -0.70 -65.05 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.35 Total: 28.95 kcal Atomic # 6 Polarization: 25.09 SS G_CDS: 6.03 Total: 31.13 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -7.06 Total: -118.59 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -2.05 Total: -50.72 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -64.35 -0.70 -65.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074345363.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.622 kcal (2) G-P(sol) polarization free energy of solvation -64.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds