Wall clock time and date at job start Wed Apr 1 2020 04:37:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.38362 * 119.40867 * 2 1
4 4 C 1.38329 * 119.45991 * 180.02562 * 3 2 1
5 5 C 1.39992 * 118.35005 * 0.02562 * 4 3 2
6 6 C 1.47521 * 120.59649 * 180.02562 * 5 4 3
7 7 O 1.21599 * 120.00036 * 149.98377 * 6 5 4
8 8 N 1.34776 * 120.00351 * 329.98734 * 6 5 4
9 9 C 1.46981 * 120.72187 * 175.08090 * 8 6 5
10 10 C 1.53158 * 108.44358 * 125.73233 * 9 8 6
11 11 C 1.52507 * 109.79582 * 54.52452 * 10 9 8
12 12 H 1.08996 * 108.93766 * 180.32911 * 11 10 9
13 13 O 1.42695 * 110.62060 * 61.29351 * 11 10 9
14 14 C 1.43083 * 113.86945 * 174.64705 * 13 11 10
15 15 C 1.53230 * 109.44739 * 61.64585 * 14 13 11
16 16 N 1.47169 * 108.70006 * 308.42196 * 15 14 13
17 17 C 1.36936 * 121.22238 * 230.91645 * 16 15 14
18 18 H 1.07997 * 120.00472 * 153.29405 * 17 16 15
19 19 C 1.38809 * 119.99835 * 333.29458 * 17 16 15
20 20 N 1.31621 * 120.00354 * 344.42885 * 19 17 16
21 21 Si 1.86805 * 120.00149 * 164.43029 * 19 17 16
22 22 H 1.48495 * 109.47217 * 89.99888 * 21 19 17
23 23 H 1.48497 * 109.47262 * 210.00373 * 21 19 17
24 24 H 1.48503 * 109.47019 * 330.00087 * 21 19 17
25 25 C 1.47590 * 117.55637 * 50.93581 * 16 15 14
26 26 H 1.08999 * 111.16852 * 187.20536 * 25 16 15
27 27 C 1.46787 * 120.71861 * 355.35456 * 8 6 5
28 28 C 1.40278 * 118.80415 * 0.27378 * 5 4 3
29 29 O 1.35430 * 119.79673 * 179.72791 * 28 5 4
30 30 N 1.31878 * 119.40943 * 180.02562 * 2 1 3
31 31 H 1.09003 * 109.47162 * 89.99972 * 1 2 3
32 32 H 1.08998 * 109.47214 * 210.00235 * 1 2 3
33 33 H 1.09006 * 109.47032 * 330.00069 * 1 2 3
34 34 H 1.08004 * 120.26855 * 0.02562 * 3 2 1
35 35 H 1.08003 * 120.82713 * 179.97438 * 4 3 2
36 36 H 1.08992 * 109.64351 * 245.42305 * 9 8 6
37 37 H 1.09003 * 109.63832 * 6.05349 * 9 8 6
38 38 H 1.08998 * 109.42156 * 294.42623 * 10 9 8
39 39 H 1.08998 * 109.41896 * 174.62688 * 10 9 8
40 40 H 1.08995 * 109.47333 * 181.64221 * 14 13 11
41 41 H 1.08998 * 109.47031 * 301.65623 * 14 13 11
42 42 H 1.09004 * 109.59277 * 68.18113 * 15 14 13
43 43 H 1.08999 * 109.59668 * 188.49356 * 15 14 13
44 44 H 0.96996 * 120.00265 * 179.97438 * 20 19 17
45 45 H 1.09008 * 109.51769 * 353.92756 * 27 8 6
46 46 H 1.09010 * 109.51986 * 114.10298 * 27 8 6
47 47 H 0.96702 * 113.99536 * 90.00094 * 29 28 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1864 1.2053 0.0000
4 6 3.5697 1.2066 -0.0005
5 6 4.2355 -0.0249 -0.0016
6 6 5.7097 -0.0814 -0.0017
7 8 6.2823 -1.0163 0.5243
8 7 6.4218 0.9032 -0.5846
9 6 7.8892 0.9191 -0.5011
10 6 8.4544 1.0064 -1.9219
11 6 7.8548 2.2088 -2.6434
12 1 8.2615 2.2542 -3.6536
13 8 8.1918 3.4197 -1.9677
14 6 7.7665 4.6022 -2.6520
15 6 6.2391 4.5993 -2.7743
16 7 5.8144 3.3140 -3.3519
17 6 4.9710 3.2642 -4.4295
18 1 4.9991 2.4169 -5.0986
19 6 4.0798 4.3028 -4.6620
20 7 3.8210 5.1736 -3.7095
21 14 3.2477 4.4646 -6.3266
22 1 1.9728 3.7032 -6.3188
23 1 2.9674 5.8965 -6.6028
24 1 4.1414 3.9228 -7.3815
25 6 6.3305 2.0808 -2.7267
26 1 6.0563 1.2003 -3.3078
27 6 5.7485 1.9862 -1.3115
28 6 3.4758 -1.2041 -0.0080
29 8 4.0992 -2.4063 -0.0147
30 7 2.1546 -1.1488 -0.0005
31 1 -0.3634 0.0000 -1.0277
32 1 -0.3633 -0.8899 0.5139
33 1 -0.3633 0.8900 0.5138
34 1 1.6411 2.1376 0.0004
35 1 4.1223 2.1345 -0.0010
36 1 8.2140 1.7846 0.0762
37 1 8.2389 0.0039 -0.0234
38 1 8.2062 0.0959 -2.4673
39 1 9.5379 1.1154 -1.8748
40 1 8.0845 5.4808 -2.0909
41 1 8.2107 4.6258 -3.6470
42 1 5.7931 4.7218 -1.7873
43 1 5.9227 5.4166 -3.4225
44 1 3.1986 5.8995 -3.8721
45 1 4.6804 1.7765 -1.3702
46 1 5.9072 2.9295 -0.7887
47 1 4.2804 -2.7603 0.8668
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001074345363.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:37:40
Heat of formation + Delta-G solvation = -52.429359 kcal
Electronic energy + Delta-G solvation = -32616.959983 eV
Core-core repulsion = 28380.006601 eV
Total energy + Delta-G solvation = -4236.953382 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-42.26707 -41.07057 -39.82602 -38.37058 -37.03648 -36.47447 -34.74323 -33.37189
-32.86717 -32.64850 -31.05145 -29.26430 -28.96801 -26.39776 -25.73879 -24.86301
-24.22915 -23.72439 -22.83637 -21.32726 -20.18264 -19.57130 -18.90230 -18.44327
-17.93177 -17.19045 -17.08831 -17.03635 -16.79602 -16.39308 -16.20145 -15.91978
-15.62224 -15.25729 -15.20950 -14.89612 -14.76433 -14.51504 -14.18214 -13.86139
-13.77123 -13.58405 -13.38059 -13.11263 -13.10466 -12.98985 -12.83336 -12.69220
-12.55219 -12.47483 -12.27833 -12.12729 -11.88922 -11.63736 -11.32635 -11.20891
-10.90193 -10.72757 -10.54150 -10.41653 -9.96165 -9.70253 -8.67718 -7.90352
-5.37216 -0.50065 -0.00087 1.44871 1.48584 1.55265 1.59306 1.87304
2.39422 2.46553 2.62500 2.87678 3.18707 3.24959 3.47958 3.60115
3.61521 3.76909 3.87356 4.00578 4.08818 4.13512 4.22323 4.23196
4.37489 4.43384 4.48340 4.54487 4.61370 4.63603 4.77219 4.79279
4.84189 4.87132 4.90141 4.91606 4.96053 5.00936 5.08377 5.19457
5.28274 5.42761 5.47469 5.58526 5.63755 6.22756 6.28437 6.36977
6.47549 6.75250 6.98064 7.07858 7.72403 8.27325 9.13628
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.008748 B = 0.005133 C = 0.003585
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3200.028158 B = 5453.969035 C = 7808.838257
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.105 4.105
2 C 0.170 3.830
3 C -0.186 4.186
4 C -0.030 4.030
5 C -0.228 4.228
6 C 0.570 3.430
7 O -0.561 6.561
8 N -0.597 5.597
9 C 0.119 3.881
10 C -0.114 4.114
11 C 0.085 3.915
12 H 0.046 0.954
13 O -0.383 6.383
14 C 0.047 3.953
15 C 0.145 3.855
16 N -0.596 5.596
17 C -0.266 4.266
18 H 0.059 0.941
19 C -0.031 4.031
20 N -0.921 5.921
21 Si 0.957 3.043
22 H -0.287 1.287
23 H -0.289 1.289
24 H -0.277 1.277
25 C 0.130 3.870
26 H 0.060 0.940
27 C 0.096 3.904
28 C 0.358 3.642
29 O -0.480 6.480
30 N -0.527 5.527
31 H 0.091 0.909
32 H 0.085 0.915
33 H 0.106 0.894
34 H 0.170 0.830
35 H 0.156 0.844
36 H 0.081 0.919
37 H 0.095 0.905
38 H 0.080 0.920
39 H 0.106 0.894
40 H 0.109 0.891
41 H 0.041 0.959
42 H 0.015 0.985
43 H 0.070 0.930
44 H 0.253 0.747
45 H 0.089 0.911
46 H 0.069 0.931
47 H 0.419 0.581
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.672 -5.067 8.822 10.196
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.032 3.968
3 C -0.206 4.206
4 C -0.055 4.055
5 C -0.235 4.235
6 C 0.358 3.642
7 O -0.441 6.441
8 N -0.328 5.328
9 C -0.003 4.003
10 C -0.152 4.152
11 C 0.026 3.974
12 H 0.064 0.936
13 O -0.302 6.302
14 C -0.030 4.030
15 C 0.020 3.980
16 N -0.319 5.319
17 C -0.395 4.395
18 H 0.077 0.923
19 C -0.228 4.228
20 N -0.566 5.566
21 Si 0.786 3.214
22 H -0.214 1.214
23 H -0.215 1.215
24 H -0.203 1.203
25 C 0.022 3.978
26 H 0.079 0.921
27 C -0.028 4.028
28 C 0.178 3.822
29 O -0.290 6.290
30 N -0.248 5.248
31 H 0.109 0.891
32 H 0.104 0.896
33 H 0.125 0.875
34 H 0.187 0.813
35 H 0.173 0.827
36 H 0.099 0.901
37 H 0.113 0.887
38 H 0.099 0.901
39 H 0.124 0.876
40 H 0.127 0.873
41 H 0.059 0.941
42 H 0.033 0.967
43 H 0.088 0.912
44 H 0.063 0.937
45 H 0.106 0.894
46 H 0.087 0.913
47 H 0.281 0.719
Dipole moment (debyes) X Y Z Total
from point charges 0.546 -6.150 8.646 10.625
hybrid contribution -0.222 1.019 -0.929 1.396
sum 0.323 -5.132 7.717 9.273
Atomic orbital electron populations
1.20951 0.85357 1.05370 1.04526 1.21912 0.98818 0.86622 0.89436
1.22274 0.94049 1.00828 1.03424 1.22271 0.95629 0.97258 0.90329
1.20993 0.94550 0.95085 1.12830 1.17985 0.86435 0.81583 0.78148
1.90684 1.72002 1.33843 1.47600 1.48105 1.07923 1.24726 1.52087
1.21648 0.77567 1.03524 0.97529 1.21778 1.02078 0.95820 0.95514
1.22225 0.93982 0.85806 0.95411 0.93552 1.87751 1.79369 1.13803
1.49294 1.23235 0.95607 0.87596 0.96600 1.21323 0.91047 0.89009
0.96608 1.44374 1.53785 0.99985 1.33803 1.19314 1.12633 1.06346
1.01255 0.92305 1.25572 0.97634 0.99365 1.00254 1.70094 1.37008
1.17539 1.31914 0.85444 0.78435 0.76698 0.80826 1.21358 1.21502
1.20266 1.21685 0.93737 0.90300 0.92101 0.92149 1.22800 0.97779
0.89016 0.93242 1.19139 0.86593 0.84885 0.91536 1.84607 1.76697
1.32120 1.35575 1.67177 1.08872 1.31495 1.17264 0.89081 0.89604
0.87500 0.81262 0.82659 0.90089 0.88691 0.90130 0.87569 0.87315
0.94095 0.96730 0.91198 0.93738 0.89372 0.91291 0.71889
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.80 10.16 71.24 0.72 -1.07 16
2 C 0.17 4.38 6.78 42.58 0.29 4.66 16
3 C -0.19 -4.83 9.71 22.32 0.22 -4.61 16
4 C -0.03 -0.89 7.53 22.72 0.17 -0.72 16
5 C -0.23 -7.50 5.50 -19.91 -0.11 -7.61 16
6 C 0.57 19.69 7.36 86.69 0.64 20.33 16
7 O -0.56 -20.76 15.21 14.08 0.21 -20.55 16
8 N -0.60 -19.42 2.96 -822.71 -2.44 -21.86 16
9 C 0.12 3.33 6.27 86.34 0.54 3.87 16
10 C -0.11 -3.03 5.82 30.48 0.18 -2.86 16
11 C 0.09 2.84 2.73 30.49 0.08 2.92 16
12 H 0.05 1.62 8.11 -2.39 -0.02 1.60 16
13 O -0.38 -12.98 9.59 -148.98 -1.43 -14.41 16
14 C 0.05 1.65 6.97 72.06 0.50 2.15 16
15 C 0.15 6.27 4.92 86.33 0.42 6.69 16
16 N -0.60 -27.19 2.71 -672.40 -1.82 -29.01 16
17 C -0.27 -13.59 9.72 84.03 0.82 -12.77 16
18 H 0.06 3.05 7.88 -2.91 -0.02 3.02 16
19 C -0.03 -1.60 4.99 84.86 0.42 -1.18 16
20 N -0.92 -48.75 11.10 21.65 0.24 -48.51 16
21 Si 0.96 42.14 29.58 68.60 2.03 44.17 16
22 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16
23 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16
24 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16
25 C 0.13 5.06 3.00 44.95 0.13 5.19 16
26 H 0.06 2.51 8.03 -2.39 -0.02 2.50 16
27 C 0.10 3.42 3.97 86.43 0.34 3.76 16
28 C 0.36 11.69 7.74 85.13 0.66 12.35 16
29 O -0.48 -14.93 12.09 -69.14 -0.84 -15.76 16
30 N -0.53 -16.16 10.28 -296.05 -3.04 -19.21 16
31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16
32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16
33 H 0.11 1.27 8.07 -2.38 -0.02 1.25 16
34 H 0.17 3.51 8.06 -2.91 -0.02 3.48 16
35 H 0.16 4.68 5.49 -2.91 -0.02 4.66 16
36 H 0.08 2.19 7.94 -2.39 -0.02 2.18 16
37 H 0.09 2.61 7.01 -2.39 -0.02 2.59 16
38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16
39 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16
40 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16
41 H 0.04 1.44 8.13 -2.39 -0.02 1.42 16
42 H 0.01 0.66 7.17 -2.38 -0.02 0.64 16
43 H 0.07 3.41 6.13 -2.39 -0.01 3.39 16
44 H 0.25 13.07 8.31 -92.71 -0.77 12.30 16
45 H 0.09 3.34 3.97 -2.38 -0.01 3.33 16
46 H 0.07 2.57 6.48 -2.38 -0.02 2.55 16
47 H 0.42 9.48 9.06 -74.06 -0.67 8.81 16
Total: -1.00 -64.35 368.54 -0.70 -65.05
By element:
Atomic # 1 Polarization: 28.60 SS G_CDS: 0.35 Total: 28.95 kcal
Atomic # 6 Polarization: 25.09 SS G_CDS: 6.03 Total: 31.13 kcal
Atomic # 7 Polarization: -111.53 SS G_CDS: -7.06 Total: -118.59 kcal
Atomic # 8 Polarization: -48.67 SS G_CDS: -2.05 Total: -50.72 kcal
Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal
Total: -64.35 -0.70 -65.05 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001074345363.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.622 kcal
(2) G-P(sol) polarization free energy of solvation -64.352 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.730 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.699 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.052 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.429 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds