Wall clock time and date at job start Wed Apr 1 2020 04:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38356 * 119.40925 * 2 1 4 4 C 1.38336 * 119.45916 * 179.76706 * 3 2 1 5 5 C 1.39987 * 118.34884 * 0.49664 * 4 3 2 6 6 C 1.47528 * 120.59998 * 179.77841 * 5 4 3 7 7 O 1.21587 * 120.00028 * 232.46020 * 6 5 4 8 8 N 1.34777 * 119.99705 * 52.45350 * 6 5 4 9 9 C 1.46839 * 120.41000 * 356.13621 * 8 6 5 10 10 C 1.53368 * 109.25015 * 127.76819 * 9 8 6 11 11 C 1.52789 * 108.81633 * 53.83187 * 10 9 8 12 12 H 1.08998 * 109.34699 * 57.15910 * 11 10 9 13 13 O 1.42602 * 111.10926 * 177.47453 * 11 10 9 14 14 C 1.43147 * 113.63156 * 183.61007 * 13 11 10 15 15 C 1.53201 * 109.74281 * 298.30944 * 14 13 11 16 16 N 1.47352 * 108.79665 * 51.21277 * 15 14 13 17 17 C 1.36934 * 121.30550 * 129.73901 * 16 15 14 18 18 H 1.08002 * 119.99817 * 214.71811 * 17 16 15 19 19 C 1.38811 * 120.00066 * 34.71533 * 17 16 15 20 20 N 1.31616 * 119.99785 * 359.00939 * 19 17 16 21 21 Si 1.86795 * 119.99846 * 179.01623 * 19 17 16 22 22 H 1.48494 * 109.47439 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47344 * 120.00222 * 21 19 17 24 24 H 1.48504 * 109.46900 * 239.99534 * 21 19 17 25 25 C 1.46880 * 117.39033 * 309.75919 * 16 15 14 26 26 H 1.09002 * 110.19922 * 292.03354 * 25 16 15 27 27 C 1.47128 * 120.40881 * 176.15327 * 8 6 5 28 28 C 1.40278 * 118.80303 * 359.51114 * 5 4 3 29 29 O 1.35434 * 119.79930 * 180.22354 * 28 5 4 30 30 N 1.31879 * 119.40873 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46946 * 269.97609 * 1 2 3 32 32 H 1.09004 * 109.47219 * 29.97333 * 1 2 3 33 33 H 1.08998 * 109.47365 * 149.97380 * 1 2 3 34 34 H 1.07996 * 120.26741 * 0.03170 * 3 2 1 35 35 H 1.08000 * 120.82796 * 180.25553 * 4 3 2 36 36 H 1.09003 * 109.50936 * 7.83508 * 9 8 6 37 37 H 1.08996 * 109.50819 * 247.69547 * 9 8 6 38 38 H 1.09006 * 109.57646 * 294.03674 * 10 9 8 39 39 H 1.08993 * 109.58779 * 173.63609 * 10 9 8 40 40 H 1.09005 * 109.42778 * 178.22795 * 14 13 11 41 41 H 1.08998 * 109.38350 * 58.36278 * 14 13 11 42 42 H 1.09000 * 109.57897 * 291.41730 * 15 14 13 43 43 H 1.08996 * 109.58105 * 171.00820 * 15 14 13 44 44 H 0.97002 * 119.99831 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.72879 * 113.54938 * 27 8 6 46 46 H 1.08994 * 109.73159 * 352.87594 * 27 8 6 47 47 H 0.96705 * 113.99692 * 89.99569 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 0.0049 5 6 4.2355 -0.0249 -0.0010 6 6 5.7097 -0.0815 -0.0010 7 8 6.2927 -0.7419 -0.8391 8 7 6.4102 0.5989 0.9278 9 6 5.7204 1.4663 1.8911 10 6 6.1612 1.0944 3.3123 11 6 7.6867 1.1402 3.3829 12 1 8.0322 2.1320 3.0913 13 8 8.1484 0.8580 4.7023 14 6 9.5682 0.9669 4.8490 15 6 10.2621 -0.0490 3.9360 16 7 9.7246 0.0941 2.5715 17 6 10.5543 0.2198 1.4894 18 1 10.2647 0.8433 0.6565 19 6 11.7675 -0.4542 1.4631 20 7 12.1291 -1.1985 2.4865 21 14 12.8869 -0.3046 -0.0248 22 1 12.2547 0.5842 -1.0325 23 1 14.1914 0.2690 0.3928 24 1 13.1043 -1.6486 -0.6178 25 6 8.2639 0.0970 2.4176 26 1 7.8584 -0.8865 2.6552 27 6 7.8756 0.4821 0.9888 28 6 3.4757 -1.2041 -0.0010 29 8 4.0991 -2.4064 -0.0021 30 7 2.1545 -1.1489 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5134 33 1 -0.3634 -0.8897 -0.5142 34 1 1.6411 2.1375 0.0005 35 1 4.1223 2.1344 0.0091 36 1 4.6430 1.3304 1.7969 37 1 5.9756 2.5070 1.6916 38 1 5.8144 0.0889 3.5509 39 1 5.7411 1.8060 4.0230 40 1 9.8419 0.7691 5.8854 41 1 9.8838 1.9740 4.5765 42 1 10.0704 -1.0582 4.3003 43 1 11.3354 0.1409 3.9276 44 1 12.9768 -1.6698 2.4680 45 1 8.3320 1.4371 0.7283 46 1 8.2125 -0.2886 0.2956 47 1 4.2807 -2.7560 0.8811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074345367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:48 Heat of formation + Delta-G solvation = -41.519307 kcal Electronic energy + Delta-G solvation = -31924.778363 eV Core-core repulsion = 27688.298077 eV Total energy + Delta-G solvation = -4236.480287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.18656 -39.77760 -38.44104 -37.43019 -36.06964 -34.75151 -33.53727 -31.88583 -31.66008 -31.43574 -29.91218 -28.34387 -27.02460 -25.27173 -24.13317 -23.59621 -23.04715 -22.08166 -21.39611 -19.85814 -19.49657 -18.72860 -17.46483 -17.14981 -16.82395 -16.23386 -15.80462 -15.40848 -15.25983 -15.03427 -14.91682 -14.44226 -14.26659 -14.06259 -13.81214 -13.61280 -13.58213 -13.11764 -13.02190 -12.88409 -12.73573 -12.61198 -12.43625 -12.22398 -11.92257 -11.82549 -11.38719 -11.09101 -10.94976 -10.90101 -10.65411 -10.29485 -10.23764 -10.20406 -10.12127 -9.98427 -9.65293 -9.53397 -9.06441 -8.96715 -8.58065 -8.41925 -6.66744 -5.88353 -3.42842 0.46374 0.81523 2.66764 2.94932 3.23573 3.33388 3.42294 3.43355 3.43936 4.15113 4.23900 4.32633 4.38884 4.44158 4.66699 4.79544 4.95068 5.05385 5.12041 5.19802 5.23903 5.26569 5.30291 5.37044 5.44710 5.58782 5.62943 5.64862 5.67469 5.69474 5.84850 5.88078 6.06409 6.10411 6.13137 6.20798 6.31313 6.42691 6.58953 6.65069 6.83331 7.13253 7.28839 7.47821 7.54446 7.61338 7.69121 7.86869 8.24428 8.35299 9.08738 9.67844 10.28943 11.18733 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014978 B = 0.003285 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.911302 B = 8522.620316 C = 9597.067716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.166 3.834 3 C -0.189 4.189 4 C -0.030 4.030 5 C -0.194 4.194 6 C 0.562 3.438 7 O -0.512 6.512 8 N -0.605 5.605 9 C 0.104 3.896 10 C -0.123 4.123 11 C 0.077 3.923 12 H 0.052 0.948 13 O -0.390 6.390 14 C 0.037 3.963 15 C 0.142 3.858 16 N -0.588 5.588 17 C -0.261 4.261 18 H 0.070 0.930 19 C 0.014 3.986 20 N -0.901 5.901 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.289 1.289 24 H -0.287 1.287 25 C 0.138 3.862 26 H 0.036 0.964 27 C 0.125 3.875 28 C 0.365 3.635 29 O -0.466 6.466 30 N -0.505 5.505 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.040 0.960 42 H 0.027 0.973 43 H 0.101 0.899 44 H 0.256 0.744 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.800 8.051 1.128 22.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.028 3.972 3 C -0.209 4.209 4 C -0.056 4.056 5 C -0.201 4.201 6 C 0.348 3.652 7 O -0.387 6.387 8 N -0.339 5.339 9 C -0.019 4.019 10 C -0.162 4.162 11 C 0.017 3.983 12 H 0.070 0.930 13 O -0.310 6.310 14 C -0.040 4.040 15 C 0.017 3.983 16 N -0.313 5.313 17 C -0.390 4.390 18 H 0.087 0.913 19 C -0.185 4.185 20 N -0.544 5.544 21 Si 0.733 3.267 22 H -0.200 1.200 23 H -0.216 1.216 24 H -0.213 1.213 25 C 0.030 3.970 26 H 0.054 0.946 27 C 0.004 3.996 28 C 0.185 3.815 29 O -0.273 6.273 30 N -0.225 5.225 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.163 0.837 35 H 0.164 0.836 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.045 0.955 43 H 0.119 0.881 44 H 0.066 0.934 45 H 0.092 0.908 46 H 0.122 0.878 47 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -20.826 6.765 0.218 21.898 hybrid contribution 1.476 0.690 -0.298 1.657 sum -19.350 7.456 -0.080 20.737 Atomic orbital electron populations 1.20809 0.88192 1.03933 1.03535 1.21232 0.97033 0.87205 0.91771 1.21881 0.94349 0.99582 1.05056 1.21720 0.94416 0.97047 0.92412 1.21067 0.95378 0.94574 1.09097 1.17860 0.85780 0.79747 0.81861 1.90858 1.70361 1.40545 1.36902 1.48218 1.08405 1.45481 1.31754 1.21933 0.97381 0.94350 0.88231 1.21843 0.95488 1.03072 0.95824 1.22430 0.92715 0.98346 0.84824 0.93026 1.87734 1.23137 1.91489 1.28600 1.23390 0.80433 0.99941 1.00270 1.21521 0.99509 0.94553 0.82720 1.43939 0.98050 1.86113 1.03166 1.19110 0.99594 1.22860 0.97475 0.91283 1.25321 0.99610 0.96220 0.97370 1.69917 1.22518 1.32483 1.29511 0.86201 0.80238 0.77667 0.82604 1.20024 1.21560 1.21303 1.21295 0.87477 0.96023 0.92176 0.94616 1.21808 0.75667 1.03393 0.98714 1.19034 0.86116 0.84807 0.91534 1.84789 1.76486 1.32251 1.33768 1.67093 1.09217 1.30460 1.15709 0.89834 0.90194 0.90121 0.83725 0.83569 0.89463 0.90903 0.90964 0.90208 0.90132 0.94207 0.95534 0.88132 0.93378 0.90800 0.87787 0.73658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.16 36.00 0.37 -0.25 16 2 C 0.17 1.55 6.78 -82.53 -0.56 0.99 16 3 C -0.19 -1.46 9.71 -39.50 -0.38 -1.85 16 4 C -0.03 -0.29 7.53 -38.89 -0.29 -0.58 16 5 C -0.19 -2.58 4.93 -104.69 -0.52 -3.09 16 6 C 0.56 9.30 6.91 -12.47 -0.09 9.22 16 7 O -0.51 -10.83 16.13 0.86 0.01 -10.81 16 8 N -0.60 -9.32 2.98 -173.93 -0.52 -9.84 16 9 C 0.10 1.19 5.43 -3.67 -0.02 1.17 16 10 C -0.12 -1.62 5.82 -26.65 -0.16 -1.78 16 11 C 0.08 1.34 2.48 -26.63 -0.07 1.27 16 12 H 0.05 0.92 8.13 -51.93 -0.42 0.49 16 13 O -0.39 -7.50 10.49 -35.23 -0.37 -7.87 16 14 C 0.04 0.72 6.95 37.26 0.26 0.98 16 15 C 0.14 3.35 5.36 -3.47 -0.02 3.33 16 16 N -0.59 -14.35 3.04 -164.35 -0.50 -14.85 16 17 C -0.26 -6.88 8.72 -15.06 -0.13 -7.01 16 18 H 0.07 1.78 6.42 -52.49 -0.34 1.44 16 19 C 0.01 0.39 5.29 -17.43 -0.09 0.30 16 20 N -0.90 -25.47 10.82 55.49 0.60 -24.87 16 21 Si 0.90 21.51 29.55 -169.99 -5.02 16.48 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.14 2.86 3.02 -67.52 -0.20 2.66 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 C 0.13 2.40 4.56 -3.71 -0.02 2.39 16 28 C 0.36 5.05 7.75 -16.61 -0.13 4.92 16 29 O -0.47 -6.72 12.73 -22.42 -0.29 -7.01 16 30 N -0.50 -6.34 10.28 -9.21 -0.09 -6.44 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 35 H 0.15 1.08 7.29 -52.49 -0.38 0.69 16 36 H 0.09 0.80 4.68 -51.93 -0.24 0.56 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 2.59 6.26 -51.93 -0.32 2.26 16 44 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.07 1.41 7.34 -51.93 -0.38 1.03 16 46 H 0.10 2.34 6.84 -51.93 -0.36 1.98 16 47 H 0.40 4.01 9.06 45.56 0.41 4.42 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -34.61 372.49 -8.42 -43.04 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.81 Total: 3.89 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: -2.05 Total: 12.67 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.51 Total: -56.00 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.64 Total: -25.69 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.61 -8.42 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074345367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.519 kcal (2) G-P(sol) polarization free energy of solvation -34.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds