Wall clock time and date at job start Wed Apr 1 2020 04:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38356 * 119.40925 * 2 1 4 4 C 1.38336 * 119.45916 * 179.76706 * 3 2 1 5 5 C 1.39987 * 118.34884 * 0.49664 * 4 3 2 6 6 C 1.47528 * 120.59998 * 179.77841 * 5 4 3 7 7 O 1.21587 * 120.00028 * 232.46020 * 6 5 4 8 8 N 1.34777 * 119.99705 * 52.45350 * 6 5 4 9 9 C 1.46839 * 120.41000 * 356.13621 * 8 6 5 10 10 C 1.53368 * 109.25015 * 127.76819 * 9 8 6 11 11 C 1.52789 * 108.81633 * 53.83187 * 10 9 8 12 12 H 1.08998 * 109.34699 * 57.15910 * 11 10 9 13 13 O 1.42602 * 111.10926 * 177.47453 * 11 10 9 14 14 C 1.43147 * 113.63156 * 183.61007 * 13 11 10 15 15 C 1.53201 * 109.74281 * 298.30944 * 14 13 11 16 16 N 1.47352 * 108.79665 * 51.21277 * 15 14 13 17 17 C 1.36934 * 121.30550 * 129.73901 * 16 15 14 18 18 H 1.08002 * 119.99817 * 214.71811 * 17 16 15 19 19 C 1.38811 * 120.00066 * 34.71533 * 17 16 15 20 20 N 1.31616 * 119.99785 * 359.00939 * 19 17 16 21 21 Si 1.86795 * 119.99846 * 179.01623 * 19 17 16 22 22 H 1.48494 * 109.47439 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47344 * 120.00222 * 21 19 17 24 24 H 1.48504 * 109.46900 * 239.99534 * 21 19 17 25 25 C 1.46880 * 117.39033 * 309.75919 * 16 15 14 26 26 H 1.09002 * 110.19922 * 292.03354 * 25 16 15 27 27 C 1.47128 * 120.40881 * 176.15327 * 8 6 5 28 28 C 1.40278 * 118.80303 * 359.51114 * 5 4 3 29 29 O 1.35434 * 119.79930 * 180.22354 * 28 5 4 30 30 N 1.31879 * 119.40873 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46946 * 269.97609 * 1 2 3 32 32 H 1.09004 * 109.47219 * 29.97333 * 1 2 3 33 33 H 1.08998 * 109.47365 * 149.97380 * 1 2 3 34 34 H 1.07996 * 120.26741 * 0.03170 * 3 2 1 35 35 H 1.08000 * 120.82796 * 180.25553 * 4 3 2 36 36 H 1.09003 * 109.50936 * 7.83508 * 9 8 6 37 37 H 1.08996 * 109.50819 * 247.69547 * 9 8 6 38 38 H 1.09006 * 109.57646 * 294.03674 * 10 9 8 39 39 H 1.08993 * 109.58779 * 173.63609 * 10 9 8 40 40 H 1.09005 * 109.42778 * 178.22795 * 14 13 11 41 41 H 1.08998 * 109.38350 * 58.36278 * 14 13 11 42 42 H 1.09000 * 109.57897 * 291.41730 * 15 14 13 43 43 H 1.08996 * 109.58105 * 171.00820 * 15 14 13 44 44 H 0.97002 * 119.99831 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.72879 * 113.54938 * 27 8 6 46 46 H 1.08994 * 109.73159 * 352.87594 * 27 8 6 47 47 H 0.96705 * 113.99692 * 89.99569 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 0.0049 5 6 4.2355 -0.0249 -0.0010 6 6 5.7097 -0.0815 -0.0010 7 8 6.2927 -0.7419 -0.8391 8 7 6.4102 0.5989 0.9278 9 6 5.7204 1.4663 1.8911 10 6 6.1612 1.0944 3.3123 11 6 7.6867 1.1402 3.3829 12 1 8.0322 2.1320 3.0913 13 8 8.1484 0.8580 4.7023 14 6 9.5682 0.9669 4.8490 15 6 10.2621 -0.0490 3.9360 16 7 9.7246 0.0941 2.5715 17 6 10.5543 0.2198 1.4894 18 1 10.2647 0.8433 0.6565 19 6 11.7675 -0.4542 1.4631 20 7 12.1291 -1.1985 2.4865 21 14 12.8869 -0.3046 -0.0248 22 1 12.2547 0.5842 -1.0325 23 1 14.1914 0.2690 0.3928 24 1 13.1043 -1.6486 -0.6178 25 6 8.2639 0.0970 2.4176 26 1 7.8584 -0.8865 2.6552 27 6 7.8756 0.4821 0.9888 28 6 3.4757 -1.2041 -0.0010 29 8 4.0991 -2.4064 -0.0021 30 7 2.1545 -1.1489 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5134 33 1 -0.3634 -0.8897 -0.5142 34 1 1.6411 2.1375 0.0005 35 1 4.1223 2.1344 0.0091 36 1 4.6430 1.3304 1.7969 37 1 5.9756 2.5070 1.6916 38 1 5.8144 0.0889 3.5509 39 1 5.7411 1.8060 4.0230 40 1 9.8419 0.7691 5.8854 41 1 9.8838 1.9740 4.5765 42 1 10.0704 -1.0582 4.3003 43 1 11.3354 0.1409 3.9276 44 1 12.9768 -1.6698 2.4680 45 1 8.3320 1.4371 0.7283 46 1 8.2125 -0.2886 0.2956 47 1 4.2807 -2.7560 0.8811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074345367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:47 Heat of formation + Delta-G solvation = -69.968263 kcal Electronic energy + Delta-G solvation = -31926.012003 eV Core-core repulsion = 27688.298077 eV Total energy + Delta-G solvation = -4237.713926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.18927 -41.04138 -39.85682 -38.39793 -37.44583 -36.55261 -34.52479 -33.30614 -32.92356 -32.62134 -31.41553 -29.34892 -28.62674 -26.71653 -25.58059 -24.63691 -23.97957 -23.54049 -22.71557 -21.51200 -20.74561 -19.68455 -18.80134 -18.54514 -18.00981 -17.47399 -17.15894 -16.99272 -16.61290 -16.41847 -16.09384 -15.81088 -15.49243 -15.30923 -15.11971 -14.80952 -14.71246 -14.68142 -14.40469 -14.03211 -13.87796 -13.59595 -13.37352 -13.08428 -12.97972 -12.96475 -12.94175 -12.71822 -12.69309 -12.44932 -12.34327 -12.05166 -11.97980 -11.81290 -11.33887 -11.30271 -10.83119 -10.68997 -10.59150 -10.50411 -9.91191 -9.72828 -8.66088 -7.94929 -5.52184 -0.37551 0.06273 1.40091 1.43740 1.44996 1.52706 1.78839 2.38301 2.42504 2.60350 2.81050 3.22155 3.27308 3.42544 3.60438 3.71354 3.81419 3.89060 3.97003 4.03159 4.16882 4.19073 4.28304 4.39289 4.42057 4.45323 4.53805 4.55469 4.61342 4.70824 4.78559 4.85284 4.85705 4.92930 4.97147 5.02766 5.08485 5.13048 5.18002 5.26532 5.38948 5.53314 5.58051 5.59795 6.23564 6.26532 6.35862 6.44040 6.81728 6.98527 7.04836 7.68132 8.26530 9.10066 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014978 B = 0.003285 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.911302 B = 8522.620316 C = 9597.067716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.160 3.840 3 C -0.167 4.167 4 C -0.024 4.024 5 C -0.214 4.214 6 C 0.562 3.438 7 O -0.573 6.573 8 N -0.600 5.600 9 C 0.103 3.897 10 C -0.115 4.115 11 C 0.081 3.919 12 H 0.060 0.940 13 O -0.393 6.393 14 C 0.051 3.949 15 C 0.146 3.854 16 N -0.606 5.606 17 C -0.262 4.262 18 H 0.073 0.927 19 C -0.041 4.041 20 N -0.932 5.932 21 Si 0.963 3.037 22 H -0.266 1.266 23 H -0.283 1.283 24 H -0.296 1.296 25 C 0.136 3.864 26 H 0.004 0.996 27 C 0.141 3.859 28 C 0.341 3.659 29 O -0.493 6.493 30 N -0.530 5.530 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.194 0.806 35 H 0.176 0.824 36 H 0.119 0.881 37 H 0.105 0.895 38 H 0.062 0.938 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.050 0.950 42 H -0.006 1.006 43 H 0.075 0.925 44 H 0.252 0.748 45 H 0.077 0.923 46 H 0.059 0.941 47 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.371 11.980 1.565 27.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.022 3.978 3 C -0.186 4.186 4 C -0.049 4.049 5 C -0.221 4.221 6 C 0.351 3.649 7 O -0.452 6.452 8 N -0.332 5.332 9 C -0.018 4.018 10 C -0.154 4.154 11 C 0.021 3.979 12 H 0.078 0.922 13 O -0.312 6.312 14 C -0.027 4.027 15 C 0.021 3.979 16 N -0.331 5.331 17 C -0.391 4.391 18 H 0.090 0.910 19 C -0.237 4.237 20 N -0.578 5.578 21 Si 0.791 3.209 22 H -0.190 1.190 23 H -0.209 1.209 24 H -0.223 1.223 25 C 0.028 3.972 26 H 0.021 0.979 27 C 0.018 3.982 28 C 0.163 3.837 29 O -0.303 6.303 30 N -0.251 5.251 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.088 0.912 34 H 0.211 0.789 35 H 0.193 0.807 36 H 0.137 0.863 37 H 0.123 0.877 38 H 0.080 0.920 39 H 0.135 0.865 40 H 0.125 0.875 41 H 0.069 0.931 42 H 0.012 0.988 43 H 0.093 0.907 44 H 0.061 0.939 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -24.447 10.738 0.692 26.711 hybrid contribution 2.430 -0.552 -0.428 2.528 sum -22.017 10.186 0.264 24.261 Atomic orbital electron populations 1.20960 0.85546 1.04960 1.04844 1.22039 0.98789 0.87006 0.89981 1.22370 0.93514 1.00750 1.01931 1.22083 0.95421 0.96270 0.91149 1.20809 0.92764 0.96224 1.12299 1.18426 0.87306 0.78353 0.80840 1.90818 1.71916 1.43064 1.39440 1.48227 1.06740 1.45877 1.32381 1.22315 0.98694 0.94896 0.85890 1.21879 0.91811 1.03827 0.97875 1.22522 0.95555 0.96858 0.82917 0.92208 1.87745 1.22609 1.91470 1.29389 1.23208 0.80294 0.98668 1.00499 1.21352 0.98728 0.94318 0.83497 1.44214 0.99664 1.86134 1.03135 1.19396 0.99663 1.22158 0.97926 0.90951 1.26037 1.01351 0.96592 0.99692 1.70082 1.22802 1.33811 1.31056 0.85264 0.78716 0.77064 0.79837 1.19020 1.20949 1.22350 1.21427 0.85436 0.95903 0.94407 0.97867 1.21317 0.78548 1.01832 0.96534 1.19215 0.86878 0.84551 0.93106 1.84739 1.77013 1.33393 1.35126 1.67136 1.08494 1.32552 1.16880 0.88184 0.87081 0.91217 0.78874 0.80676 0.86323 0.87695 0.91958 0.86459 0.87476 0.93145 0.98830 0.90688 0.93879 0.90441 0.92206 0.72526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.16 71.23 0.72 -0.06 16 2 C 0.16 2.42 6.78 42.58 0.29 2.70 16 3 C -0.17 -1.68 9.71 22.32 0.22 -1.46 16 4 C -0.02 -0.35 7.53 22.72 0.17 -0.18 16 5 C -0.21 -5.44 4.93 -19.91 -0.10 -5.54 16 6 C 0.56 18.95 6.91 86.69 0.60 19.55 16 7 O -0.57 -25.85 16.13 0.25 0.00 -25.84 16 8 N -0.60 -18.15 2.98 -822.45 -2.45 -20.60 16 9 C 0.10 1.96 5.43 86.44 0.47 2.43 16 10 C -0.12 -2.64 5.82 30.65 0.18 -2.46 16 11 C 0.08 2.69 2.48 30.66 0.08 2.77 16 12 H 0.06 1.94 8.13 -2.39 -0.02 1.92 16 13 O -0.39 -14.45 10.49 -148.98 -1.56 -16.01 16 14 C 0.05 1.93 6.95 72.05 0.50 2.43 16 15 C 0.15 7.17 5.36 86.28 0.46 7.63 16 16 N -0.61 -30.75 3.04 -673.88 -2.05 -32.79 16 17 C -0.26 -14.29 8.72 84.03 0.73 -13.56 16 18 H 0.07 3.83 6.42 -2.91 -0.02 3.81 16 19 C -0.04 -2.28 5.29 84.86 0.45 -1.83 16 20 N -0.93 -55.28 10.82 21.65 0.23 -55.04 16 21 Si 0.96 45.69 29.55 68.60 2.03 47.72 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 25 C 0.14 5.78 3.02 45.05 0.14 5.92 16 26 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 27 C 0.14 5.56 4.56 86.25 0.39 5.96 16 28 C 0.34 9.51 7.75 85.13 0.66 10.17 16 29 O -0.49 -15.34 12.73 -83.06 -1.06 -16.39 16 30 N -0.53 -12.73 10.28 -296.06 -3.04 -15.77 16 31 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.11 0.16 8.07 -2.38 -0.02 0.14 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.19 0.13 8.06 -2.91 -0.02 0.10 16 35 H 0.18 1.55 7.29 -2.91 -0.02 1.53 16 36 H 0.12 1.60 4.68 -2.39 -0.01 1.59 16 37 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.11 3.47 8.14 -2.38 -0.02 3.45 16 41 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 42 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 43 H 0.07 4.04 6.26 -2.39 -0.01 4.02 16 44 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 45 H 0.08 2.98 7.34 -2.39 -0.02 2.96 16 46 H 0.06 2.89 6.84 -2.39 -0.02 2.88 16 47 H 0.41 9.35 9.06 -74.05 -0.67 8.68 16 Total: -1.00 -83.67 372.49 -1.59 -85.27 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.34 Total: 14.99 kcal Atomic # 6 Polarization: 28.51 SS G_CDS: 5.96 Total: 34.47 kcal Atomic # 7 Polarization: -116.90 SS G_CDS: -7.31 Total: -124.20 kcal Atomic # 8 Polarization: -55.63 SS G_CDS: -2.62 Total: -58.24 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -83.67 -1.59 -85.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074345367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.297 kcal (2) G-P(sol) polarization free energy of solvation -83.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds