Wall clock time and date at job start Wed Apr 1 2020 04:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35684 * 117.00041 * 2 1 4 4 C 1.38896 * 119.62022 * 179.97438 * 3 2 1 5 5 C 1.39572 * 118.94014 * 179.97438 * 4 3 2 6 6 C 1.48164 * 120.88811 * 180.02562 * 5 4 3 7 7 O 1.21518 * 119.99975 * 138.35244 * 6 5 4 8 8 N 1.34775 * 120.00063 * 318.35272 * 6 5 4 9 9 C 1.44962 * 117.33672 * 356.69276 * 8 6 5 10 10 C 1.51967 * 111.93837 * 203.47061 * 9 8 6 11 11 O 1.41325 * 111.60545 * 319.69464 * 10 9 8 12 12 C 1.40851 * 118.30573 * 56.89734 * 11 10 9 13 13 H 1.09004 * 109.53741 * 188.62829 * 12 11 10 14 14 C 1.53913 * 110.30514 * 68.00695 * 12 11 10 15 15 N 1.46775 * 107.62609 * 221.40465 * 14 12 11 16 16 C 1.36939 * 125.36214 * 178.78066 * 15 14 12 17 17 H 1.07993 * 120.00217 * 180.02562 * 16 15 14 18 18 C 1.38814 * 119.99812 * 0.03369 * 16 15 14 19 19 N 1.31626 * 120.00218 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99943 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47005 * 89.99798 * 20 18 16 22 22 H 1.48504 * 109.47218 * 209.99620 * 20 18 16 23 23 H 1.48493 * 109.47149 * 330.00001 * 20 18 16 24 24 C 1.46870 * 109.27582 * 358.80945 * 15 14 12 25 25 C 1.44546 * 117.34085 * 176.43434 * 8 6 5 26 26 H 1.08998 * 109.63979 * 286.73155 * 25 8 6 27 27 C 1.39963 * 118.22058 * 0.27536 * 5 4 3 28 28 C 1.37977 * 119.13604 * 359.45631 * 27 5 4 29 29 C 1.50699 * 119.51532 * 180.27445 * 28 27 5 30 30 N 1.31918 * 120.97110 * 0.55759 * 28 27 5 31 31 H 1.09006 * 109.47164 * 300.00075 * 1 2 3 32 32 H 1.08994 * 109.47420 * 59.99908 * 1 2 3 33 33 H 1.09000 * 109.47271 * 180.02562 * 1 2 3 34 34 H 1.07996 * 120.53077 * 359.95646 * 4 3 2 35 35 H 1.08998 * 108.98897 * 324.10657 * 9 8 6 36 36 H 1.09001 * 108.98775 * 82.84126 * 9 8 6 37 37 H 1.09001 * 109.05056 * 80.24062 * 10 9 8 38 38 H 1.09003 * 109.05227 * 199.21640 * 10 9 8 39 39 H 1.08996 * 109.82139 * 340.93039 * 14 12 11 40 40 H 1.08997 * 109.82644 * 101.79389 * 14 12 11 41 41 H 0.96991 * 120.00125 * 180.02562 * 19 18 16 42 42 H 1.09000 * 110.06815 * 137.03109 * 24 15 14 43 43 H 1.08998 * 110.06277 * 258.50248 * 24 15 14 44 44 H 1.08000 * 120.43218 * 179.72866 * 27 5 4 45 45 H 1.08997 * 109.47076 * 270.27758 * 29 28 27 46 46 H 1.08996 * 109.46924 * 30.27771 * 29 28 27 47 47 H 1.08999 * 109.47223 * 150.28194 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4326 1.2724 0.0005 5 6 4.0514 2.5235 0.0000 6 6 5.5283 2.6415 0.0000 7 8 6.0714 3.4734 -0.6998 8 7 6.2695 1.8261 0.7760 9 6 5.5601 0.9053 1.6422 10 6 6.4072 0.4744 2.8280 11 8 7.7498 0.2435 2.4519 12 6 8.4598 1.2911 1.8336 13 1 9.4165 0.9174 1.4687 14 6 8.7024 2.4352 2.8341 15 7 8.4764 3.7006 2.1256 16 6 8.5707 4.9483 2.6820 17 1 8.3852 5.8242 2.0782 18 6 8.9050 5.0871 4.0221 19 7 9.1308 4.0195 4.7581 20 14 9.0344 6.7891 4.7809 21 1 7.7123 7.1901 5.3255 22 1 10.0355 6.7674 5.8776 23 1 9.4582 7.7629 3.7431 24 6 8.1325 3.4178 0.7260 25 6 7.7070 1.9370 0.6725 26 1 8.0413 1.5008 -0.2688 27 6 3.2395 3.6635 0.0048 28 6 1.8681 3.5116 -0.0015 29 6 0.9858 4.7333 -0.0026 30 7 1.3179 2.3126 -0.0010 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 4.0231 0.3683 0.0017 35 1 4.6556 1.3897 2.0098 36 1 5.2794 0.0226 1.0675 37 1 6.3797 1.2558 3.5875 38 1 5.9931 -0.4430 3.2464 39 1 8.0070 2.3498 3.6691 40 1 9.7278 2.3939 3.2015 41 1 9.3640 4.1165 5.6946 42 1 7.3079 4.0556 0.4073 43 1 9.0003 3.5818 0.0872 44 1 3.6806 4.6493 0.0090 45 1 0.7726 5.0285 1.0247 46 1 1.4948 5.5485 -0.5167 47 1 0.0518 4.5065 -0.5167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083176708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:22 Heat of formation + Delta-G solvation = -12.657806 kcal Electronic energy + Delta-G solvation = -32109.729426 eV Core-core repulsion = 27874.500667 eV Total energy + Delta-G solvation = -4235.228758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.38489 -40.41868 -38.63227 -37.92052 -35.95458 -35.06164 -33.32751 -32.25643 -31.88867 -30.03722 -28.61312 -28.00730 -27.57168 -26.80072 -24.92552 -23.87656 -23.40510 -22.77571 -21.06211 -19.93627 -18.94622 -18.23630 -17.33888 -17.15193 -16.61987 -16.47530 -16.29599 -16.06744 -15.60578 -15.32000 -14.87008 -14.67349 -14.49460 -14.27291 -14.14521 -13.85794 -13.63883 -13.46536 -12.79860 -12.71256 -12.62857 -12.52356 -12.27422 -12.14281 -11.95105 -11.88272 -11.44436 -11.25596 -11.07782 -10.97788 -10.67149 -10.63318 -10.52160 -10.10508 -10.05731 -9.97228 -9.72730 -9.41106 -8.92546 -8.62623 -8.60032 -8.30217 -6.80511 -5.71577 -3.04740 0.64402 0.95619 2.64950 2.77322 3.02251 3.39743 3.45166 3.47284 3.56477 3.89995 4.06508 4.25616 4.50025 4.68208 4.77488 4.85047 4.93183 5.00187 5.06191 5.07519 5.09590 5.23441 5.27509 5.36037 5.37952 5.38870 5.44004 5.51969 5.65547 5.68943 5.70427 5.74990 5.82526 5.93647 5.98641 6.05550 6.13905 6.25900 6.45699 6.78761 6.97406 7.10711 7.33352 7.42150 7.52374 7.60568 7.72182 7.87551 8.17349 8.26327 9.21927 9.82229 10.45429 11.39779 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012287 B = 0.003603 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.335106 B = 7769.602846 C = 8847.872443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.306 6.306 3 C 0.321 3.679 4 C -0.173 4.173 5 C -0.037 4.037 6 C 0.552 3.448 7 O -0.508 6.508 8 N -0.572 5.572 9 C 0.075 3.925 10 C 0.058 3.942 11 O -0.369 6.369 12 C 0.069 3.931 13 H 0.112 0.888 14 C 0.152 3.848 15 N -0.601 5.601 16 C -0.222 4.222 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.924 5.924 20 Si 0.912 3.088 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.109 3.891 25 C 0.108 3.892 26 H 0.075 0.925 27 C -0.157 4.157 28 C 0.166 3.834 29 C -0.104 4.104 30 N -0.531 5.531 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.152 0.848 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.104 0.896 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.252 0.748 42 H 0.086 0.914 43 H 0.028 0.972 44 H 0.148 0.852 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.441 -8.660 -8.637 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.213 6.213 3 C 0.143 3.857 4 C -0.194 4.194 5 C -0.047 4.047 6 C 0.339 3.661 7 O -0.384 6.384 8 N -0.305 5.305 9 C -0.048 4.048 10 C -0.020 4.020 11 O -0.286 6.286 12 C 0.010 3.990 13 H 0.130 0.870 14 C 0.027 3.973 15 N -0.329 5.329 16 C -0.351 4.351 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.572 5.572 20 Si 0.743 3.257 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.017 4.017 25 C 0.004 3.996 26 H 0.093 0.907 27 C -0.178 4.178 28 C 0.030 3.970 29 C -0.161 4.161 30 N -0.256 5.256 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.169 0.831 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.122 0.878 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.166 0.834 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.740 -8.694 -8.734 20.787 hybrid contribution 0.573 1.161 0.521 1.395 sum -16.167 -7.533 -8.213 19.636 Atomic orbital electron populations 1.22855 0.77157 1.02926 1.02479 1.86249 1.22948 1.24191 1.87944 1.19556 0.88858 0.84652 0.92680 1.21374 0.92282 0.98775 1.06967 1.20166 0.94156 0.93248 0.97154 1.18202 0.85720 0.81139 0.80996 1.90717 1.71954 1.34417 1.41348 1.46484 1.06320 1.37298 1.40364 1.21953 0.96251 0.93266 0.93327 1.22258 0.82306 1.02418 0.94984 1.86876 1.23883 1.39055 1.78804 1.22976 0.93734 0.89861 0.92413 0.87049 1.21680 1.01427 0.82178 0.92043 1.44238 1.81827 1.02333 1.04508 1.19060 1.40126 0.82863 0.93028 0.90372 1.24792 1.01953 0.97399 0.96389 1.69947 1.53915 1.26410 1.06924 0.86110 0.77347 0.83440 0.78852 1.21706 1.21670 1.20645 1.22114 0.99164 0.92451 0.87985 1.21814 0.78563 0.99954 0.99259 0.90694 1.21902 0.93338 0.99633 1.02894 1.20861 0.91566 0.91848 0.92706 1.20765 0.98981 0.92809 1.03591 1.66968 1.41171 0.98451 1.19033 0.92237 0.92334 0.88610 0.83080 0.89924 0.91265 0.91905 0.87772 0.92609 0.92971 0.93774 0.89679 0.95462 0.83448 0.89873 0.90025 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.37 16 2 O -0.31 -3.39 10.47 -18.75 -0.20 -3.59 16 3 C 0.32 3.98 7.49 -17.16 -0.13 3.85 16 4 C -0.17 -2.17 7.81 -38.84 -0.30 -2.47 16 5 C -0.04 -0.52 4.87 -104.68 -0.51 -1.03 16 6 C 0.55 9.51 6.85 -12.18 -0.08 9.43 16 7 O -0.51 -10.14 13.84 5.35 0.07 -10.06 16 8 N -0.57 -9.65 3.09 -169.82 -0.52 -10.18 16 9 C 0.08 1.04 4.90 -5.39 -0.03 1.02 16 10 C 0.06 0.87 6.72 36.63 0.25 1.11 16 11 O -0.37 -6.50 10.24 -34.45 -0.35 -6.86 16 12 C 0.07 1.32 3.83 -26.40 -0.10 1.22 16 13 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 14 C 0.15 3.68 5.02 -3.42 -0.02 3.66 16 15 N -0.60 -15.58 3.39 -171.44 -0.58 -16.16 16 16 C -0.22 -6.30 10.25 -15.06 -0.15 -6.46 16 17 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 18 C -0.01 -0.27 5.48 -17.43 -0.10 -0.37 16 19 N -0.92 -27.05 10.26 55.49 0.57 -26.48 16 20 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 C 0.11 2.42 6.30 -3.23 -0.02 2.40 16 25 C 0.11 2.01 3.41 -68.51 -0.23 1.78 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 27 C -0.16 -2.09 9.40 -39.03 -0.37 -2.46 16 28 C 0.17 1.96 6.77 -82.65 -0.56 1.40 16 29 C -0.10 -0.87 10.16 36.01 0.37 -0.50 16 30 N -0.53 -6.53 9.09 -9.60 -0.09 -6.62 16 31 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.06 0.46 8.10 -51.93 -0.42 0.03 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.15 1.68 5.68 -52.49 -0.30 1.38 16 35 H 0.08 1.10 6.32 -51.93 -0.33 0.77 16 36 H 0.07 0.79 6.27 -51.93 -0.33 0.46 16 37 H 0.06 1.11 6.81 -51.93 -0.35 0.75 16 38 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.49 5.74 -51.93 -0.30 1.19 16 40 H 0.05 1.40 7.49 -51.93 -0.39 1.01 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.09 2.02 4.80 -52.50 -0.25 1.77 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 47 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 369.48 15.07 5.57 5.57 Total: -1.00 -33.44 369.48 -7.93 -41.37 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.43 Total: 1.75 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: -0.94 Total: 13.95 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -0.62 Total: -59.44 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.48 Total: -20.50 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.44 -7.93 -41.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083176708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.712 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds