Wall clock time and date at job start Wed Apr 1 2020 04:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35684 * 117.00041 * 2 1 4 4 C 1.38896 * 119.62022 * 179.97438 * 3 2 1 5 5 C 1.39572 * 118.94014 * 179.97438 * 4 3 2 6 6 C 1.48164 * 120.88811 * 180.02562 * 5 4 3 7 7 O 1.21518 * 119.99975 * 138.35244 * 6 5 4 8 8 N 1.34775 * 120.00063 * 318.35272 * 6 5 4 9 9 C 1.44962 * 117.33672 * 356.69276 * 8 6 5 10 10 C 1.51967 * 111.93837 * 203.47061 * 9 8 6 11 11 O 1.41325 * 111.60545 * 319.69464 * 10 9 8 12 12 C 1.40851 * 118.30573 * 56.89734 * 11 10 9 13 13 H 1.09004 * 109.53741 * 188.62829 * 12 11 10 14 14 C 1.53913 * 110.30514 * 68.00695 * 12 11 10 15 15 N 1.46775 * 107.62609 * 221.40465 * 14 12 11 16 16 C 1.36939 * 125.36214 * 178.78066 * 15 14 12 17 17 H 1.07993 * 120.00217 * 180.02562 * 16 15 14 18 18 C 1.38814 * 119.99812 * 0.03369 * 16 15 14 19 19 N 1.31626 * 120.00218 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99943 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47005 * 89.99798 * 20 18 16 22 22 H 1.48504 * 109.47218 * 209.99620 * 20 18 16 23 23 H 1.48493 * 109.47149 * 330.00001 * 20 18 16 24 24 C 1.46870 * 109.27582 * 358.80945 * 15 14 12 25 25 C 1.44546 * 117.34085 * 176.43434 * 8 6 5 26 26 H 1.08998 * 109.63979 * 286.73155 * 25 8 6 27 27 C 1.39963 * 118.22058 * 0.27536 * 5 4 3 28 28 C 1.37977 * 119.13604 * 359.45631 * 27 5 4 29 29 C 1.50699 * 119.51532 * 180.27445 * 28 27 5 30 30 N 1.31918 * 120.97110 * 0.55759 * 28 27 5 31 31 H 1.09006 * 109.47164 * 300.00075 * 1 2 3 32 32 H 1.08994 * 109.47420 * 59.99908 * 1 2 3 33 33 H 1.09000 * 109.47271 * 180.02562 * 1 2 3 34 34 H 1.07996 * 120.53077 * 359.95646 * 4 3 2 35 35 H 1.08998 * 108.98897 * 324.10657 * 9 8 6 36 36 H 1.09001 * 108.98775 * 82.84126 * 9 8 6 37 37 H 1.09001 * 109.05056 * 80.24062 * 10 9 8 38 38 H 1.09003 * 109.05227 * 199.21640 * 10 9 8 39 39 H 1.08996 * 109.82139 * 340.93039 * 14 12 11 40 40 H 1.08997 * 109.82644 * 101.79389 * 14 12 11 41 41 H 0.96991 * 120.00125 * 180.02562 * 19 18 16 42 42 H 1.09000 * 110.06815 * 137.03109 * 24 15 14 43 43 H 1.08998 * 110.06277 * 258.50248 * 24 15 14 44 44 H 1.08000 * 120.43218 * 179.72866 * 27 5 4 45 45 H 1.08997 * 109.47076 * 270.27758 * 29 28 27 46 46 H 1.08996 * 109.46924 * 30.27771 * 29 28 27 47 47 H 1.08999 * 109.47223 * 150.28194 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4326 1.2724 0.0005 5 6 4.0514 2.5235 0.0000 6 6 5.5283 2.6415 0.0000 7 8 6.0714 3.4734 -0.6998 8 7 6.2695 1.8261 0.7760 9 6 5.5601 0.9053 1.6422 10 6 6.4072 0.4744 2.8280 11 8 7.7498 0.2435 2.4519 12 6 8.4598 1.2911 1.8336 13 1 9.4165 0.9174 1.4687 14 6 8.7024 2.4352 2.8341 15 7 8.4764 3.7006 2.1256 16 6 8.5707 4.9483 2.6820 17 1 8.3852 5.8242 2.0782 18 6 8.9050 5.0871 4.0221 19 7 9.1308 4.0195 4.7581 20 14 9.0344 6.7891 4.7809 21 1 7.7123 7.1901 5.3255 22 1 10.0355 6.7674 5.8776 23 1 9.4582 7.7629 3.7431 24 6 8.1325 3.4178 0.7260 25 6 7.7070 1.9370 0.6725 26 1 8.0413 1.5008 -0.2688 27 6 3.2395 3.6635 0.0048 28 6 1.8681 3.5116 -0.0015 29 6 0.9858 4.7333 -0.0026 30 7 1.3179 2.3126 -0.0010 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 4.0231 0.3683 0.0017 35 1 4.6556 1.3897 2.0098 36 1 5.2794 0.0226 1.0675 37 1 6.3797 1.2558 3.5875 38 1 5.9931 -0.4430 3.2464 39 1 8.0070 2.3498 3.6691 40 1 9.7278 2.3939 3.2015 41 1 9.3640 4.1165 5.6946 42 1 7.3079 4.0556 0.4073 43 1 9.0003 3.5818 0.0872 44 1 3.6806 4.6493 0.0090 45 1 0.7726 5.0285 1.0247 46 1 1.4948 5.5485 -0.5167 47 1 0.0518 4.5065 -0.5167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083176708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:21 Heat of formation + Delta-G solvation = -37.469970 kcal Electronic energy + Delta-G solvation = -32110.805362 eV Core-core repulsion = 27874.500667 eV Total energy + Delta-G solvation = -4236.304694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.60022 -41.55078 -39.92097 -38.90086 -37.67229 -36.41420 -34.72013 -33.79660 -32.84679 -31.71814 -29.68897 -29.37401 -29.11422 -27.61632 -26.72027 -25.16064 -24.77591 -23.74809 -22.67813 -21.39887 -20.30001 -19.37257 -18.98641 -18.45038 -17.93718 -17.78464 -17.24261 -17.11777 -16.96761 -16.83677 -16.33414 -16.13187 -15.74647 -15.54790 -15.22390 -15.12149 -15.03001 -14.55040 -14.33595 -14.15735 -13.87355 -13.60539 -13.38406 -13.28428 -13.07566 -13.03010 -12.93745 -12.86232 -12.66572 -12.46469 -12.20777 -12.15905 -12.03338 -11.90498 -11.72843 -11.21754 -10.96136 -10.84234 -10.75350 -10.35535 -9.69110 -9.53591 -8.90619 -7.88768 -5.24848 -0.39057 0.00139 1.39479 1.42245 1.43858 1.53256 1.64953 2.03124 2.44995 2.56983 2.71180 2.99076 3.15789 3.29184 3.50112 3.66816 3.67682 3.75295 3.80815 3.90498 3.98993 4.05020 4.10686 4.33911 4.35981 4.40454 4.46349 4.47286 4.52508 4.54219 4.65397 4.76018 4.78711 4.79665 4.85061 4.93827 4.97634 5.00971 5.07456 5.31855 5.38837 5.45778 5.52962 5.63583 6.03188 6.12957 6.15035 6.35699 6.67472 6.85084 7.06661 7.72535 8.34148 9.20365 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012287 B = 0.003603 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.335106 B = 7769.602846 C = 8847.872443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.311 6.311 3 C 0.319 3.681 4 C -0.168 4.168 5 C -0.049 4.049 6 C 0.551 3.449 7 O -0.544 6.544 8 N -0.577 5.577 9 C 0.074 3.926 10 C 0.053 3.947 11 O -0.368 6.368 12 C 0.085 3.915 13 H 0.133 0.867 14 C 0.163 3.837 15 N -0.619 5.619 16 C -0.243 4.243 17 H 0.074 0.926 18 C -0.060 4.060 19 N -0.947 5.947 20 Si 0.978 3.022 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.272 1.272 24 C 0.106 3.894 25 C 0.119 3.881 26 H 0.101 0.899 27 C -0.172 4.172 28 C 0.169 3.831 29 C -0.103 4.103 30 N -0.533 5.533 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.125 0.875 34 H 0.168 0.832 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.028 0.972 38 H 0.149 0.851 39 H 0.024 0.976 40 H 0.016 0.984 41 H 0.248 0.752 42 H 0.072 0.928 43 H 0.026 0.974 44 H 0.141 0.859 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.540 -9.980 -9.296 23.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.218 6.218 3 C 0.140 3.860 4 C -0.189 4.189 5 C -0.060 4.060 6 C 0.339 3.661 7 O -0.423 6.423 8 N -0.309 5.309 9 C -0.048 4.048 10 C -0.023 4.023 11 O -0.285 6.285 12 C 0.026 3.974 13 H 0.150 0.850 14 C 0.037 3.963 15 N -0.346 5.346 16 C -0.372 4.372 17 H 0.092 0.908 18 C -0.254 4.254 19 N -0.596 5.596 20 Si 0.806 3.194 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.197 1.197 24 C -0.020 4.020 25 C 0.014 3.986 26 H 0.118 0.882 27 C -0.193 4.193 28 C 0.033 3.967 29 C -0.160 4.160 30 N -0.259 5.259 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.143 0.857 34 H 0.185 0.815 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.046 0.954 38 H 0.166 0.834 39 H 0.042 0.958 40 H 0.034 0.966 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.044 0.956 44 H 0.159 0.841 45 H 0.112 0.888 46 H 0.110 0.890 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.871 -10.046 -9.406 23.356 hybrid contribution 1.119 1.553 0.729 2.048 sum -17.752 -8.494 -8.676 21.507 Atomic orbital electron populations 1.23115 0.75442 1.04890 1.02444 1.86249 1.24618 1.23327 1.87556 1.19709 0.88991 0.85195 0.92104 1.21408 0.92615 0.98405 1.06437 1.19962 0.92378 0.94576 0.99065 1.18632 0.86934 0.80325 0.80201 1.90686 1.72927 1.35792 1.42920 1.46614 1.05705 1.37874 1.40711 1.22182 0.95679 0.93992 0.92907 1.22529 0.81488 1.03543 0.94777 1.86889 1.25210 1.37802 1.78612 1.22733 0.95251 0.88454 0.91008 0.84985 1.21431 0.98338 0.83763 0.92744 1.44471 1.81806 1.02233 1.06112 1.19350 1.40225 0.84041 0.93554 0.90792 1.25604 1.01900 1.01108 0.96753 1.70168 1.54484 1.28223 1.06737 0.85093 0.77212 0.79267 0.77861 1.21198 1.21661 1.19656 1.22188 0.98632 0.95135 0.86009 1.21629 0.79895 0.97072 1.00015 0.88172 1.21990 0.94202 0.99240 1.03885 1.21296 0.91286 0.92795 0.91317 1.20867 0.98906 0.91636 1.04544 1.67080 1.41166 0.98595 1.19047 0.92293 0.92308 0.85733 0.81499 0.89332 0.87493 0.95375 0.83395 0.95772 0.96585 0.94285 0.91042 0.95590 0.84086 0.88843 0.88951 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.38 113.37 1.18 1.64 16 2 O -0.31 -6.00 10.47 -90.02 -0.94 -6.94 16 3 C 0.32 7.19 7.49 84.80 0.63 7.82 16 4 C -0.17 -3.85 7.81 22.75 0.18 -3.67 16 5 C -0.05 -1.38 4.87 -19.90 -0.10 -1.47 16 6 C 0.55 18.82 6.85 86.88 0.60 19.41 16 7 O -0.54 -22.13 13.84 -3.77 -0.05 -22.18 16 8 N -0.58 -18.91 3.09 -809.47 -2.50 -21.41 16 9 C 0.07 1.90 4.90 86.33 0.42 2.32 16 10 C 0.05 1.51 6.72 71.64 0.48 2.00 16 11 O -0.37 -12.44 10.24 -146.19 -1.50 -13.94 16 12 C 0.08 3.21 3.83 30.81 0.12 3.33 16 13 H 0.13 4.44 8.14 -2.39 -0.02 4.42 16 14 C 0.16 8.18 5.02 86.64 0.43 8.61 16 15 N -0.62 -33.22 3.39 -696.32 -2.36 -35.58 16 16 C -0.24 -14.22 10.25 84.03 0.86 -13.36 16 17 H 0.07 4.26 7.83 -2.91 -0.02 4.24 16 18 C -0.06 -3.52 5.48 84.86 0.47 -3.05 16 19 N -0.95 -57.44 10.26 21.65 0.22 -57.21 16 20 Si 0.98 46.83 29.55 68.60 2.03 48.86 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 23 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 24 C 0.11 4.81 6.30 86.70 0.55 5.36 16 25 C 0.12 4.33 3.41 45.66 0.16 4.49 16 26 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 27 C -0.17 -4.53 9.40 22.63 0.21 -4.32 16 28 C 0.17 3.74 6.77 42.48 0.29 4.03 16 29 C -0.10 -1.52 10.16 71.24 0.72 -0.79 16 30 N -0.53 -12.07 9.09 -297.17 -2.70 -14.77 16 31 H 0.06 0.78 8.10 -2.38 -0.02 0.76 16 32 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 33 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.17 3.16 5.68 -2.91 -0.02 3.15 16 35 H 0.09 2.19 6.32 -2.39 -0.02 2.18 16 36 H 0.11 2.00 6.27 -2.39 -0.01 1.98 16 37 H 0.03 1.00 6.81 -2.39 -0.02 0.98 16 38 H 0.15 2.90 8.14 -2.39 -0.02 2.88 16 39 H 0.02 1.36 5.74 -2.39 -0.01 1.34 16 40 H 0.02 0.90 7.49 -2.39 -0.02 0.89 16 41 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.07 3.52 4.80 -11.46 -0.05 3.46 16 43 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 45 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.09 1.17 8.08 -2.39 -0.02 1.15 16 47 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -75.41 369.48 0.36 -75.05 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.96 Total: 15.78 kcal Atomic # 6 Polarization: 25.14 SS G_CDS: 7.20 Total: 32.34 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -7.34 Total: -128.97 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -2.49 Total: -43.06 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -75.41 0.36 -75.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083176708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.582 kcal (2) G-P(sol) polarization free energy of solvation -75.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds