Wall clock time and date at job start Wed Apr 1 2020 05:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34518 * 125.79002 * 2 1 4 4 C 1.41387 * 106.83873 * 180.02562 * 3 2 1 5 5 C 1.34514 * 106.84127 * 359.97438 * 4 3 2 6 6 C 1.50701 * 125.78882 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.46832 * 90.00176 * 6 5 4 8 8 O 1.21277 * 120.00605 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99568 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99739 * 179.97438 * 9 7 6 11 11 H 1.08994 * 110.88483 * 322.64392 * 10 9 7 12 12 C 1.54631 * 110.96883 * 86.45721 * 10 9 7 13 13 C 1.51281 * 104.31067 * 142.98212 * 12 10 9 14 14 O 1.21288 * 124.93742 * 163.64367 * 13 12 10 15 15 N 1.34418 * 110.11952 * 343.67722 * 13 12 10 16 16 C 1.46493 * 124.35106 * 179.57371 * 15 13 12 17 17 C 1.53952 * 113.74186 * 36.65082 * 16 15 13 18 18 N 1.47583 * 86.11718 * 222.04668 * 17 16 15 19 19 C 1.36932 * 134.49468 * 204.63757 * 18 17 16 20 20 H 1.07999 * 120.00109 * 179.97438 * 19 18 17 21 21 C 1.38812 * 120.00205 * 0.02562 * 19 18 17 22 22 N 1.31624 * 119.99708 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00416 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47033 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47497 * 119.99982 * 23 21 19 26 26 H 1.48496 * 109.47595 * 239.99883 * 23 21 19 27 27 C 1.47585 * 91.01290 * 24.63966 * 18 17 16 28 28 C 1.46765 * 111.29577 * 359.59413 * 15 13 12 29 29 O 1.34301 * 108.42109 * 0.26655 * 5 4 3 30 30 H 1.09001 * 109.47352 * 89.99332 * 1 2 3 31 31 H 1.09000 * 109.47498 * 210.00380 * 1 2 3 32 32 H 1.09001 * 109.46910 * 330.00148 * 1 2 3 33 33 H 1.07995 * 126.57739 * 0.05304 * 3 2 1 34 34 H 1.07996 * 126.58007 * 180.02562 * 4 3 2 35 35 H 1.08993 * 109.47264 * 330.00055 * 6 5 4 36 36 H 1.09004 * 109.46869 * 210.00239 * 6 5 4 37 37 H 0.97005 * 120.00143 * 0.02562 * 9 7 6 38 38 H 1.09002 * 110.48855 * 24.23473 * 12 10 9 39 39 H 1.08998 * 110.48570 * 261.72534 * 12 10 9 40 40 H 1.08997 * 112.94765 * 168.38238 * 16 15 13 41 41 H 1.09000 * 113.76826 * 336.34368 * 17 16 15 42 42 H 1.08996 * 113.76543 * 107.75020 * 17 16 15 43 43 H 0.97001 * 120.00197 * 180.02562 * 22 21 19 44 44 H 1.08998 * 113.76901 * 221.05519 * 27 18 17 45 45 H 1.08997 * 113.76882 * 89.66017 * 27 18 17 46 46 H 1.09001 * 110.23936 * 136.01576 * 28 15 13 47 47 H 1.08998 * 110.24401 * 257.92122 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5813 -0.7122 -0.0004 6 6 4.7705 -1.6379 -0.0003 7 6 5.1669 -1.9463 1.4206 8 8 4.5454 -1.4617 2.3424 9 7 6.2122 -2.7606 1.6669 10 6 6.5980 -3.0599 3.0482 11 1 6.4782 -2.1826 3.6838 12 6 5.7915 -4.2580 3.6007 13 6 6.7819 -5.0099 4.4623 14 8 6.4876 -5.8436 5.2926 15 7 8.0354 -4.6191 4.1744 16 6 9.2357 -5.1414 4.8321 17 6 9.1548 -6.6414 5.1691 18 7 9.7769 -6.2826 6.4585 19 6 10.5293 -6.9580 7.3819 20 1 10.8741 -6.4523 8.2717 21 6 10.8496 -8.2926 7.1740 22 7 10.4297 -8.9089 6.0894 23 14 11.8764 -9.2139 8.4334 24 1 12.2204 -8.3022 9.5540 25 1 11.1020 -10.3690 8.9542 26 1 13.1238 -9.7028 7.7929 27 6 9.2625 -4.9033 6.3527 28 6 8.0468 -3.6016 3.1168 29 8 2.2924 -1.0894 -0.0056 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.9665 2.1204 0.0008 34 1 4.5212 1.2432 -0.0004 35 1 5.6039 -1.1590 -0.5142 36 1 4.5105 -2.5635 -0.5140 37 1 6.7096 -3.1479 0.9296 38 1 5.4390 -4.8893 2.7851 39 1 4.9519 -3.9082 4.2013 40 1 10.1570 -4.8526 4.3264 41 1 8.1356 -7.0163 5.2625 42 1 9.7840 -7.2681 4.5372 43 1 10.6532 -9.8416 5.9443 44 1 9.9775 -4.1426 6.6658 45 1 8.2749 -4.7678 6.7937 46 1 8.7375 -2.7985 3.3736 47 1 8.3287 -4.0507 2.1644 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094726553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:56 Heat of formation + Delta-G solvation = 16.867390 kcal Electronic energy + Delta-G solvation = -29617.708941 eV Core-core repulsion = 25383.760492 eV Total energy + Delta-G solvation = -4233.948450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.87824 -40.74569 -39.61336 -37.27623 -36.41957 -34.19336 -33.48574 -33.35132 -32.18362 -30.84229 -29.80417 -27.58451 -27.09634 -25.40595 -24.72213 -23.42804 -22.30213 -21.94545 -21.08728 -20.49648 -20.24813 -18.34416 -17.75732 -17.24349 -16.79907 -16.55140 -16.30016 -16.12938 -15.62533 -15.43272 -14.77732 -14.64872 -14.36989 -13.97913 -13.87275 -13.82126 -13.53609 -13.51043 -13.35303 -13.26654 -13.08867 -12.93813 -12.53903 -12.41472 -12.09991 -11.95200 -11.82404 -11.59256 -11.40595 -11.17243 -10.85181 -10.70451 -10.37116 -10.16992 -10.10899 -9.95892 -9.71199 -9.49161 -9.17447 -8.65532 -8.56652 -8.19440 -6.80756 -5.71988 -3.03866 1.36409 2.22860 2.26160 2.50248 2.82132 2.92266 3.29936 3.42506 3.47956 3.50145 4.10749 4.17254 4.40922 4.50887 4.51759 4.52683 4.70646 4.73582 4.80010 4.85721 4.88197 5.06171 5.07093 5.23983 5.32576 5.33867 5.35761 5.52737 5.54039 5.63482 5.65160 5.67525 5.70531 5.85276 5.85734 6.08294 6.25528 6.29564 6.52004 6.58250 6.87224 6.88243 7.05510 7.29785 7.48378 7.59527 7.64930 7.82128 8.01985 8.54927 9.09207 9.75078 10.64216 11.45341 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.038294 B = 0.001694 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.016933 B =16521.007810 C =16717.637678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.010 4.010 3 C -0.213 4.213 4 C -0.190 4.190 5 C 0.000 4.000 6 C -0.059 4.059 7 C 0.516 3.484 8 O -0.521 6.521 9 N -0.720 5.720 10 C 0.136 3.864 11 H 0.111 0.889 12 C -0.167 4.167 13 C 0.515 3.485 14 O -0.506 6.506 15 N -0.606 5.606 16 C 0.098 3.902 17 C 0.151 3.849 18 N -0.605 5.605 19 C -0.220 4.220 20 H 0.081 0.919 21 C -0.009 4.009 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.111 3.889 28 C 0.100 3.900 29 O -0.170 6.170 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.405 0.595 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.253 0.747 44 H 0.043 0.957 45 H 0.039 0.961 46 H 0.085 0.915 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.745 20.621 -20.450 32.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 C -0.232 4.232 4 C -0.209 4.209 5 C -0.050 4.050 6 C -0.099 4.099 7 C 0.301 3.699 8 O -0.395 6.395 9 N -0.373 5.373 10 C 0.031 3.969 11 H 0.129 0.871 12 C -0.209 4.209 13 C 0.301 3.699 14 O -0.381 6.381 15 N -0.341 5.341 16 C -0.004 4.004 17 C 0.026 3.974 18 N -0.331 5.331 19 C -0.347 4.347 20 H 0.099 0.901 21 C -0.205 4.205 22 N -0.566 5.566 23 Si 0.744 3.256 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.217 1.217 27 C -0.016 4.016 28 C -0.025 4.025 29 O -0.067 6.067 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.144 0.856 36 H 0.132 0.868 37 H 0.240 0.760 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.104 0.896 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.204 19.913 -19.134 31.054 hybrid contribution 0.869 -0.518 0.289 1.052 sum -13.336 19.395 -18.845 30.152 Atomic orbital electron populations 1.20312 0.85131 1.04215 1.03407 1.22424 0.93970 0.84082 1.05507 1.21536 0.92662 0.99373 1.09615 1.21494 0.98289 0.93629 1.07520 1.21348 0.82677 0.93763 1.07238 1.20070 0.93886 1.00431 0.95525 1.20424 0.79996 0.78373 0.91097 1.90783 1.51983 1.50736 1.46018 1.45880 1.33226 1.49945 1.08255 1.21859 0.93481 0.98303 0.83304 0.87148 1.22827 0.99365 0.97443 1.01261 1.20601 0.83516 0.82568 0.83181 1.90790 1.81085 1.32363 1.33823 1.48493 1.07285 1.40532 1.37837 1.24095 0.85071 0.98797 0.92486 1.22790 0.98154 0.89533 0.86965 1.45669 1.57925 1.06962 1.22539 1.19040 1.23155 0.92923 0.99606 0.90120 1.24803 1.01120 0.96446 0.98138 1.69843 1.49404 1.10812 1.26587 0.86022 0.79416 0.79798 0.80381 1.20446 1.21733 1.21732 1.22934 0.96997 0.89448 0.92253 1.22243 0.95757 0.92080 0.92425 1.83923 1.16156 1.35164 1.71477 0.90140 0.90463 0.89314 0.83535 0.83563 0.85649 0.86820 0.76011 0.87831 0.87879 0.87628 0.92324 0.91179 0.93719 0.93904 0.94318 0.89646 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.42 36.00 0.38 -0.03 16 2 C -0.01 -0.09 7.32 -35.63 -0.26 -0.35 16 3 C -0.21 -1.89 10.81 -39.70 -0.43 -2.32 16 4 C -0.19 -1.72 10.81 -39.70 -0.43 -2.15 16 5 C 0.00 0.00 5.81 -35.62 -0.21 -0.21 16 6 C -0.06 -0.34 6.23 -29.03 -0.18 -0.52 16 7 C 0.52 4.47 7.82 -10.98 -0.09 4.39 16 8 O -0.52 -7.10 15.78 5.56 0.09 -7.01 16 9 N -0.72 -4.70 5.19 -52.04 -0.27 -4.97 16 10 C 0.14 1.26 3.44 -66.11 -0.23 1.03 16 11 H 0.11 1.14 7.73 -51.93 -0.40 0.74 16 12 C -0.17 -2.03 6.58 -26.74 -0.18 -2.21 16 13 C 0.52 8.79 7.44 -10.86 -0.08 8.71 16 14 O -0.51 -11.43 14.64 5.55 0.08 -11.35 16 15 N -0.61 -9.20 3.15 -166.41 -0.52 -9.73 16 16 C 0.10 1.86 4.82 -70.14 -0.34 1.52 16 17 C 0.15 3.79 6.88 -2.97 -0.02 3.77 16 18 N -0.60 -16.38 3.70 -178.06 -0.66 -17.04 16 19 C -0.22 -6.42 10.70 -15.06 -0.16 -6.58 16 20 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 22 N -0.92 -28.24 11.38 55.49 0.63 -27.60 16 23 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 27 C 0.11 2.43 8.45 -2.97 -0.03 2.40 16 28 C 0.10 0.94 7.08 -2.93 -0.02 0.92 16 29 O -0.17 -1.85 10.65 5.71 0.06 -1.79 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.13 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.40 1.29 8.38 -40.82 -0.34 0.94 16 38 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 39 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 41 H 0.06 1.62 5.58 -51.93 -0.29 1.33 16 42 H 0.07 1.89 7.15 -51.93 -0.37 1.52 16 43 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.04 0.91 7.41 -51.93 -0.38 0.52 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.07 0.53 7.79 -51.93 -0.40 0.13 16 LS Contribution 393.14 15.07 5.92 5.92 Total: -1.00 -40.25 393.14 -8.86 -49.12 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -6.81 Total: -1.33 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -2.36 Total: 8.02 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -0.82 Total: -59.34 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.23 Total: -20.15 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -40.25 -8.86 -49.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094726553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.983 kcal (2) G-P(sol) polarization free energy of solvation -40.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds