Wall clock time and date at job start Wed Apr 1 2020 05:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33653 * 125.80146 * 2 1 4 4 C 1.34222 * 110.90775 * 180.02562 * 3 2 1 5 5 C 1.34179 * 109.12134 * 359.97438 * 4 3 2 6 6 C 1.36421 * 125.80222 * 179.97438 * 2 1 3 7 7 C 1.47376 * 127.18934 * 359.73824 * 6 2 1 8 8 O 1.21615 * 120.00139 * 359.97438 * 7 6 2 9 9 N 1.34782 * 120.00204 * 179.97438 * 7 6 2 10 10 C 1.46496 * 120.00098 * 179.97438 * 9 7 6 11 11 H 1.08996 * 110.54698 * 36.94379 * 10 9 7 12 12 C 1.54840 * 110.61113 * 159.97784 * 10 9 7 13 13 C 1.55844 * 103.51928 * 118.50778 * 12 10 9 14 14 H 1.09004 * 116.14874 * 159.22557 * 13 12 10 15 15 C 1.55853 * 105.03107 * 288.26886 * 13 12 10 16 16 C 1.54838 * 103.51783 * 71.73320 * 15 13 12 17 17 C 1.55847 * 110.61417 * 274.07160 * 10 9 7 18 18 H 1.09007 * 115.57911 * 82.60552 * 17 10 9 19 19 N 1.50645 * 101.03240 * 208.50038 * 17 10 9 20 20 C 1.46899 * 110.99979 * 297.65710 * 19 17 10 21 21 C 1.50704 * 109.47302 * 189.99595 * 20 19 17 22 22 O 1.21293 * 119.99492 * 359.97438 * 21 20 19 23 23 N 1.34778 * 120.00213 * 179.97438 * 21 20 19 24 24 C 1.37093 * 120.00143 * 179.97438 * 23 21 20 25 25 H 1.08006 * 119.99835 * 359.97438 * 24 23 21 26 26 C 1.38946 * 120.00284 * 179.97438 * 24 23 21 27 27 N 1.31417 * 119.99700 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 120.00269 * 180.02562 * 26 24 23 29 29 H 1.48500 * 109.46848 * 59.99901 * 28 26 24 30 30 H 1.48494 * 109.46994 * 179.97438 * 28 26 24 31 31 H 1.48499 * 109.46995 * 300.00049 * 28 26 24 32 32 H 1.08994 * 109.46807 * 270.00092 * 1 2 3 33 33 H 1.09004 * 109.46709 * 30.00304 * 1 2 3 34 34 H 1.09000 * 109.46891 * 149.99582 * 1 2 3 35 35 H 1.08000 * 125.43762 * 180.02562 * 4 3 2 36 36 H 1.08000 * 127.02040 * 180.02562 * 5 4 3 37 37 H 0.97003 * 119.99315 * 0.02562 * 9 7 6 38 38 H 1.09001 * 110.60959 * 237.02000 * 12 10 9 39 39 H 1.09003 * 110.61112 * 359.97438 * 12 10 9 40 40 H 1.08996 * 110.60902 * 190.23600 * 15 13 12 41 41 H 1.08999 * 110.61462 * 313.22237 * 15 13 12 42 42 H 1.08997 * 110.60767 * 241.49358 * 16 15 13 43 43 H 1.08994 * 110.61508 * 118.50589 * 16 15 13 44 44 H 1.08995 * 109.47058 * 309.99598 * 20 19 17 45 45 H 1.08999 * 109.47423 * 69.99580 * 20 19 17 46 46 H 0.96996 * 119.99715 * 359.97438 * 23 21 20 47 47 H 0.97003 * 119.99633 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5860 0.7390 -0.0006 5 6 3.6849 -0.5991 -0.0004 6 6 2.3051 -1.1064 0.0005 7 6 1.8740 -2.5157 0.0065 8 8 0.6890 -2.7891 0.0122 9 7 2.7930 -3.5016 0.0056 10 6 2.3645 -4.9025 0.0122 11 1 1.4698 -5.0317 -0.5969 12 6 3.5049 -5.8237 -0.4861 13 6 3.7884 -6.7467 0.7372 14 1 4.2941 -7.6880 0.5217 15 6 4.4919 -5.8286 1.7818 16 6 3.3514 -4.9075 2.2802 17 6 2.1114 -5.3921 1.4699 18 1 1.1365 -5.1413 1.8881 19 7 2.4110 -6.8624 1.3363 20 6 1.4814 -7.5060 0.3985 21 6 1.6472 -9.0020 0.4740 22 8 2.4602 -9.4844 1.2339 23 7 0.8921 -9.8037 -0.3029 24 6 1.0433 -11.1646 -0.2347 25 1 1.7678 -11.5942 0.4414 26 6 0.2645 -11.9912 -1.0352 27 7 -0.6167 -11.4684 -1.8582 28 14 0.4700 -13.8455 -0.9417 29 1 0.1795 -14.3066 0.4397 30 1 -0.4710 -14.4962 -1.8884 31 1 1.8644 -14.2078 -1.3016 32 1 -0.3633 0.0000 1.0276 33 1 -0.3633 0.8900 -0.5139 34 1 -0.3633 -0.8900 -0.5139 35 1 4.4173 1.4284 -0.0003 36 1 4.5928 -1.1841 -0.0003 37 1 3.7382 -3.2835 0.0015 38 1 3.1763 -6.4120 -1.3429 39 1 4.3889 -5.2379 -0.7383 40 1 4.8938 -6.4208 2.6039 41 1 5.2796 -5.2424 1.3087 42 1 3.5739 -3.8647 2.0540 43 1 3.1881 -5.0430 3.3493 44 1 0.4577 -7.2402 0.6618 45 1 1.6955 -7.1674 -0.6152 46 1 0.2418 -9.4179 -0.9104 47 1 -1.1601 -12.0455 -2.4173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108899520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:26 Heat of formation + Delta-G solvation = -22.092364 kcal Electronic energy + Delta-G solvation = -30756.460272 eV Core-core repulsion = 26520.822400 eV Total energy + Delta-G solvation = -4235.637871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.92181 -41.23870 -39.06388 -37.75443 -34.48121 -33.83122 -33.30354 -32.17836 -31.93704 -31.06682 -29.83126 -28.79984 -27.12271 -26.39669 -24.15888 -23.71284 -22.25939 -21.43165 -20.48825 -20.01149 -19.41075 -18.88851 -18.21837 -17.75985 -16.69971 -16.53033 -16.37890 -15.69542 -15.67285 -15.53294 -14.94763 -14.55831 -14.38100 -14.15092 -13.74728 -13.66593 -13.45830 -13.24765 -13.24171 -12.92135 -12.78986 -12.64367 -12.15552 -12.06361 -11.93076 -11.78825 -11.67738 -11.39282 -11.28284 -10.99727 -10.84693 -10.63998 -10.40828 -10.20467 -10.17054 -10.15848 -10.10893 -9.43929 -9.34388 -8.92891 -8.45766 -7.97783 -7.89894 -6.36138 -3.76836 1.06304 1.67865 2.43905 3.02637 3.15262 3.23393 3.28593 3.33014 3.92905 4.00152 4.14452 4.24866 4.42268 4.50023 4.57322 4.62592 4.78027 4.91802 5.05705 5.12438 5.14535 5.19355 5.21522 5.25346 5.31071 5.35983 5.38991 5.43278 5.49200 5.63686 5.67783 5.81316 5.84307 5.89381 5.91401 5.97071 5.98502 6.18630 6.22438 6.32802 6.37484 6.38829 6.65289 6.88785 7.21754 7.34702 7.59859 8.07417 8.11852 8.68413 9.23983 9.61250 10.13812 10.81731 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020855 B = 0.002238 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.285592 B =12507.738716 C =13337.130903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.080 3.920 3 O -0.177 6.177 4 C -0.039 4.039 5 C -0.189 4.189 6 C -0.247 4.247 7 C 0.589 3.411 8 O -0.538 6.538 9 N -0.707 5.707 10 C 0.114 3.886 11 H 0.095 0.905 12 C -0.163 4.163 13 C 0.057 3.943 14 H 0.123 0.877 15 C -0.114 4.114 16 C -0.112 4.112 17 C 0.036 3.964 18 H 0.115 0.885 19 N -0.459 5.459 20 C 0.020 3.980 21 C 0.448 3.552 22 O -0.577 6.577 23 N -0.567 5.567 24 C -0.297 4.297 25 H 0.102 0.898 26 C 0.021 3.979 27 N -0.903 5.903 28 Si 0.930 3.070 29 H -0.274 1.274 30 H -0.285 1.285 31 H -0.274 1.274 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.207 0.793 36 H 0.156 0.844 37 H 0.398 0.602 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.059 0.941 46 H 0.391 0.609 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.438 26.171 1.431 27.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.027 3.973 3 O -0.073 6.073 4 C -0.105 4.105 5 C -0.208 4.208 6 C -0.251 4.251 7 C 0.377 3.623 8 O -0.417 6.417 9 N -0.358 5.358 10 C 0.008 3.992 11 H 0.113 0.887 12 C -0.202 4.202 13 C -0.051 4.051 14 H 0.140 0.860 15 C -0.152 4.152 16 C -0.150 4.150 17 C -0.074 4.074 18 H 0.133 0.867 19 N -0.181 5.181 20 C -0.112 4.112 21 C 0.233 3.767 22 O -0.461 6.461 23 N -0.205 5.205 24 C -0.427 4.427 25 H 0.119 0.881 26 C -0.180 4.180 27 N -0.545 5.545 28 Si 0.757 3.243 29 H -0.199 1.199 30 H -0.210 1.210 31 H -0.200 1.200 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.224 0.776 36 H 0.174 0.826 37 H 0.233 0.767 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.077 0.923 46 H 0.224 0.776 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.848 25.442 2.358 26.729 hybrid contribution 0.363 -0.287 -1.301 1.381 sum 8.211 25.155 1.057 26.482 Atomic orbital electron populations 1.20641 0.83630 1.05174 1.04560 1.22875 0.94193 0.83066 0.97183 1.83782 1.17176 1.35042 1.71329 1.23852 0.83560 0.96399 1.06674 1.22857 0.96619 0.94589 1.06752 1.21168 0.93287 0.93926 1.16737 1.17190 0.85566 0.83653 0.75882 1.90779 1.16502 1.83972 1.50412 1.45824 1.09368 1.05626 1.75019 1.22840 0.98161 0.79561 0.98649 0.88695 1.23556 0.98121 0.98175 1.00351 1.24449 0.91804 0.97566 0.91321 0.85963 1.22603 0.96673 0.97057 0.98881 1.22520 0.94155 0.98291 1.00028 1.24867 0.99351 0.88861 0.94293 0.86727 1.67488 1.01201 1.09160 1.40233 1.22177 0.97875 0.95395 0.95763 1.19702 0.85183 0.87215 0.84570 1.90512 1.38420 1.76024 1.41104 1.41861 1.35214 1.06562 1.36815 1.19630 1.20256 0.80944 1.21857 0.88053 1.25247 0.96019 1.00614 0.96147 1.69612 1.23479 1.36409 1.24980 0.85933 0.78066 0.82184 0.78112 1.19931 1.21033 1.19981 0.89193 0.90399 0.87144 0.77596 0.82648 0.76656 0.89975 0.90460 0.90815 0.91891 0.91517 0.91182 0.89405 0.92325 0.77551 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 9.88 36.01 0.36 -0.32 16 2 C 0.08 0.77 7.37 -34.96 -0.26 0.51 16 3 O -0.18 -1.53 10.52 7.63 0.08 -1.45 16 4 C -0.04 -0.25 12.03 29.30 0.35 0.10 16 5 C -0.19 -1.37 10.60 -37.46 -0.40 -1.76 16 6 C -0.25 -2.50 6.31 -103.28 -0.65 -3.15 16 7 C 0.59 7.06 7.81 -12.54 -0.10 6.96 16 8 O -0.54 -8.06 14.58 5.26 0.08 -7.98 16 9 N -0.71 -7.19 3.63 -52.49 -0.19 -7.38 16 10 C 0.11 1.39 2.27 -65.44 -0.15 1.24 16 11 H 0.10 1.34 7.19 -51.93 -0.37 0.96 16 12 C -0.16 -1.92 5.39 -24.24 -0.13 -2.05 16 13 C 0.06 0.82 4.56 -62.56 -0.29 0.54 16 14 H 0.12 2.04 7.95 -51.93 -0.41 1.63 16 15 C -0.11 -1.32 6.43 -24.24 -0.16 -1.48 16 16 C -0.11 -1.29 6.32 -24.24 -0.15 -1.44 16 17 C 0.04 0.50 4.80 -62.56 -0.30 0.20 16 18 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 19 N -0.46 -7.71 5.09 -207.01 -1.05 -8.76 16 20 C 0.02 0.36 4.83 -4.97 -0.02 0.34 16 21 C 0.45 10.78 7.72 -10.98 -0.08 10.69 16 22 O -0.58 -15.86 15.58 5.55 0.09 -15.77 16 23 N -0.57 -14.66 5.29 -10.96 -0.06 -14.72 16 24 C -0.30 -8.41 9.68 -14.94 -0.14 -8.55 16 25 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 26 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 27 N -0.90 -25.00 13.05 55.50 0.72 -24.27 16 28 Si 0.93 21.38 29.55 -169.99 -5.02 16.35 16 29 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 30 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 31 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.11 1.06 6.50 -51.93 -0.34 0.72 16 35 H 0.21 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.16 0.73 7.74 -52.49 -0.41 0.32 16 37 H 0.40 3.07 7.18 -40.82 -0.29 2.78 16 38 H 0.08 1.05 6.95 -51.93 -0.36 0.68 16 39 H 0.08 0.72 7.34 -51.93 -0.38 0.34 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.57 7.82 -51.93 -0.41 0.16 16 42 H 0.07 0.66 6.48 -51.93 -0.34 0.32 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.09 1.55 8.09 -51.93 -0.42 1.13 16 45 H 0.06 0.98 5.10 -51.93 -0.26 0.71 16 46 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 47 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -34.39 380.59 -8.20 -42.60 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -6.36 Total: 13.34 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -2.22 Total: 2.31 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.58 Total: -55.13 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: 0.24 Total: -25.20 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.39 -8.20 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108899520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.503 kcal (2) G-P(sol) polarization free energy of solvation -34.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds