Wall clock time and date at job start Wed Apr 1 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.33654 * 125.79896 * 2 1 4 4 C 1.34217 * 110.90508 * 180.02562 * 3 2 1 5 5 C 1.34179 * 109.12457 * 359.75205 * 4 3 2 6 6 C 1.36415 * 125.79947 * 179.97438 * 2 1 3 7 7 C 1.47378 * 127.19392 * 359.96596 * 6 2 1 8 8 O 1.21618 * 119.99987 * 359.97438 * 7 6 2 9 9 N 1.34775 * 119.99798 * 180.02562 * 7 6 2 10 10 C 1.46505 * 120.00032 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.54565 * 36.40957 * 10 9 7 12 12 C 1.54834 * 110.61100 * 273.54748 * 10 9 7 13 13 C 1.55850 * 103.65641 * 241.25197 * 12 10 9 14 14 H 1.09002 * 115.58235 * 158.96370 * 13 12 10 15 15 C 1.55849 * 105.03482 * 288.35033 * 13 12 10 16 16 C 1.56981 * 103.64577 * 71.41270 * 15 13 12 17 17 C 1.55837 * 110.74838 * 159.36636 * 10 9 7 18 18 H 1.09006 * 115.58303 * 319.68320 * 17 10 9 19 19 N 1.50657 * 101.02945 * 85.57850 * 17 10 9 20 20 C 1.46896 * 110.99779 * 297.65344 * 19 17 10 21 21 C 1.50705 * 109.46919 * 189.99688 * 20 19 17 22 22 O 1.21287 * 119.99914 * 0.02562 * 21 20 19 23 23 N 1.34774 * 119.99780 * 180.02562 * 21 20 19 24 24 C 1.37102 * 119.99805 * 180.02562 * 23 21 20 25 25 H 1.08001 * 119.99470 * 359.97438 * 24 23 21 26 26 C 1.38944 * 119.99825 * 179.97438 * 24 23 21 27 27 N 1.31415 * 120.00091 * 180.02562 * 26 24 23 28 28 Si 1.86802 * 120.00295 * 359.97438 * 26 24 23 29 29 H 1.48493 * 109.46964 * 90.00057 * 28 26 24 30 30 H 1.48499 * 109.47088 * 210.00177 * 28 26 24 31 31 H 1.48502 * 109.46829 * 330.00167 * 28 26 24 32 32 H 1.09002 * 109.47069 * 270.00244 * 1 2 3 33 33 H 1.09003 * 109.47104 * 29.99778 * 1 2 3 34 34 H 1.09003 * 109.47041 * 150.00001 * 1 2 3 35 35 H 1.08001 * 125.43720 * 180.02562 * 4 3 2 36 36 H 1.08001 * 127.02290 * 180.26968 * 5 4 3 37 37 H 0.96995 * 119.99899 * 359.97438 * 9 7 6 38 38 H 1.09002 * 110.61437 * 359.84053 * 12 10 9 39 39 H 1.08997 * 110.61293 * 122.66715 * 12 10 9 40 40 H 1.09003 * 110.61249 * 190.23390 * 15 13 12 41 41 H 1.09002 * 110.60865 * 313.22001 * 15 13 12 42 42 H 1.08995 * 111.33330 * 241.87894 * 16 15 13 43 43 H 1.09000 * 110.64431 * 118.36182 * 16 15 13 44 44 H 1.08999 * 109.47222 * 309.99423 * 20 19 17 45 45 H 1.08999 * 109.47445 * 69.99639 * 20 19 17 46 46 H 0.97001 * 120.00006 * 359.97438 * 23 21 20 47 47 H 0.96993 * 120.00321 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5860 0.7391 -0.0006 5 6 3.6850 -0.5991 0.0045 6 6 2.3051 -1.1064 0.0005 7 6 1.8740 -2.5157 0.0018 8 8 0.6890 -2.7892 0.0031 9 7 2.7931 -3.5015 0.0027 10 6 2.3646 -4.9025 0.0046 11 1 1.4670 -5.0288 -0.6008 12 6 2.1200 -5.3957 1.4517 13 6 3.1449 -6.5573 1.6228 14 1 3.3990 -6.8132 2.6514 15 6 2.5908 -7.7182 0.7429 16 6 2.8339 -7.2187 -0.7253 17 6 3.5072 -5.8299 -0.5083 18 1 4.0804 -5.4476 -1.3530 19 7 4.2832 -6.0608 0.7623 20 6 4.8263 -4.7996 1.2839 21 6 5.7911 -5.0932 2.4038 22 8 6.0055 -6.2403 2.7344 23 7 6.4157 -4.0811 3.0378 24 6 7.2939 -4.3483 4.0563 25 1 7.4847 -5.3697 4.3506 26 6 7.9382 -3.3049 4.7096 27 7 8.7803 -3.5609 5.6854 28 14 7.6085 -1.5383 4.1999 29 1 6.4710 -0.9998 4.9881 30 1 8.8190 -0.7161 4.4526 31 1 7.2734 -1.4946 2.7539 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8900 -0.5138 34 1 -0.3633 -0.8900 -0.5138 35 1 4.4173 1.4285 -0.0003 36 1 4.5929 -1.1840 0.0096 37 1 3.7382 -3.2834 0.0021 38 1 2.3203 -4.5987 2.1678 39 1 1.1004 -5.7640 1.5644 40 1 3.1396 -8.6404 0.9343 41 1 1.5251 -7.8604 0.9221 42 1 1.8948 -7.1093 -1.2676 43 1 3.5074 -7.8932 -1.2541 44 1 5.3465 -4.2702 0.4856 45 1 4.0114 -4.1807 1.6594 46 1 6.2445 -3.1638 2.7731 47 1 9.2303 -2.8326 6.1413 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110265057.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:36 Heat of formation + Delta-G solvation = -12.875872 kcal Electronic energy + Delta-G solvation = -31708.183234 eV Core-core repulsion = 27472.945020 eV Total energy + Delta-G solvation = -4235.238214 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.81715 -41.32214 -39.03884 -38.01282 -34.47063 -33.98557 -33.22818 -32.13214 -32.02540 -31.55371 -29.77702 -28.94396 -27.10581 -26.59260 -24.09419 -23.74714 -22.17652 -21.02333 -20.76204 -20.19791 -19.57770 -19.15749 -18.28204 -17.93753 -16.65256 -16.63250 -16.47228 -15.89983 -15.50345 -15.13361 -15.06433 -14.76897 -14.51464 -14.34505 -13.71621 -13.57998 -13.35999 -13.25916 -13.18294 -13.08958 -12.90166 -12.54206 -12.36552 -12.15374 -12.09750 -12.00927 -11.68541 -11.55083 -11.40428 -11.22818 -10.99631 -10.75729 -10.62488 -10.43273 -10.07792 -10.00198 -9.99137 -9.57747 -9.23202 -8.80847 -8.72764 -8.20619 -8.17279 -6.32072 -3.83356 1.13024 1.80519 2.53677 2.96936 3.03258 3.03685 3.11657 3.18341 3.69018 3.76621 4.07888 4.25024 4.42197 4.51212 4.59653 4.60647 4.62564 4.86350 4.98884 5.02840 5.11355 5.17571 5.22834 5.24150 5.27166 5.32934 5.36508 5.40712 5.44509 5.53944 5.56440 5.63677 5.72850 5.87025 5.88492 5.91675 5.97668 6.02060 6.10297 6.14428 6.30207 6.38814 6.70480 6.75339 7.01196 7.32412 7.57116 8.05985 8.13497 8.59491 8.94731 9.41389 9.83159 10.81289 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007296 B = 0.004935 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3836.846527 B = 5671.918357 C = 8968.861264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.079 3.921 3 O -0.176 6.176 4 C -0.035 4.035 5 C -0.190 4.190 6 C -0.249 4.249 7 C 0.592 3.408 8 O -0.542 6.542 9 N -0.719 5.719 10 C 0.114 3.886 11 H 0.098 0.902 12 C -0.165 4.165 13 C 0.057 3.943 14 H 0.123 0.877 15 C -0.114 4.114 16 C -0.108 4.108 17 C 0.034 3.966 18 H 0.116 0.884 19 N -0.460 5.460 20 C 0.009 3.991 21 C 0.457 3.543 22 O -0.555 6.555 23 N -0.593 5.593 24 C -0.303 4.303 25 H 0.120 0.880 26 C 0.042 3.958 27 N -0.882 5.882 28 Si 0.877 3.123 29 H -0.271 1.271 30 H -0.276 1.276 31 H -0.270 1.270 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.210 0.790 36 H 0.157 0.843 37 H 0.401 0.599 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.368 0.632 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.691 6.400 -15.674 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.025 3.975 3 O -0.072 6.072 4 C -0.101 4.101 5 C -0.209 4.209 6 C -0.253 4.253 7 C 0.381 3.619 8 O -0.422 6.422 9 N -0.372 5.372 10 C 0.008 3.992 11 H 0.116 0.884 12 C -0.205 4.205 13 C -0.051 4.051 14 H 0.141 0.859 15 C -0.152 4.152 16 C -0.147 4.147 17 C -0.075 4.075 18 H 0.134 0.866 19 N -0.182 5.182 20 C -0.123 4.123 21 C 0.242 3.758 22 O -0.436 6.436 23 N -0.233 5.233 24 C -0.432 4.432 25 H 0.137 0.863 26 C -0.161 4.161 27 N -0.522 5.522 28 Si 0.704 3.296 29 H -0.197 1.197 30 H -0.202 1.202 31 H -0.196 1.196 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.127 0.873 35 H 0.226 0.774 36 H 0.175 0.825 37 H 0.238 0.762 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.086 0.914 46 H 0.200 0.800 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.781 5.382 -15.322 22.644 hybrid contribution 0.164 2.315 -0.059 2.321 sum -15.617 7.697 -15.380 23.231 Atomic orbital electron populations 1.20614 0.83742 1.04980 1.04486 1.22824 0.94133 0.83133 0.97363 1.83777 1.17222 1.34931 1.71283 1.23895 0.83437 0.96468 1.06300 1.22919 0.96665 0.94760 1.06538 1.21144 0.93397 0.93840 1.16967 1.17218 0.85474 0.83762 0.75461 1.90738 1.16528 1.84111 1.50790 1.46222 1.09901 1.05846 1.75218 1.22897 0.99287 0.79693 0.97315 0.88402 1.23786 1.00957 0.99727 0.96044 1.24563 0.88002 0.94006 0.98569 0.85950 1.22954 1.00068 0.98311 0.93858 1.22868 0.99833 0.94782 0.97174 1.24819 0.92290 0.95394 0.95009 0.86592 1.67566 1.25526 1.23435 1.01706 1.22415 0.98604 0.93063 0.98240 1.19553 0.84870 0.86027 0.85370 1.90564 1.65660 1.20432 1.66904 1.42197 1.41085 1.06654 1.33407 1.19421 1.17834 0.97274 1.08643 0.86274 1.25014 0.96572 0.98203 0.96322 1.69615 1.27537 1.32694 1.22374 0.86707 0.78932 0.85269 0.78689 1.19698 1.20169 1.19581 0.89278 0.90428 0.87315 0.77389 0.82522 0.76158 0.90875 0.90196 0.90624 0.91380 0.91064 0.90451 0.89976 0.91375 0.79983 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 9.89 36.01 0.36 -0.37 16 2 C 0.08 0.88 7.37 -34.96 -0.26 0.62 16 3 O -0.18 -1.88 10.52 7.64 0.08 -1.80 16 4 C -0.04 -0.33 12.03 29.30 0.35 0.03 16 5 C -0.19 -1.96 10.60 -37.45 -0.40 -2.36 16 6 C -0.25 -3.01 6.31 -103.28 -0.65 -3.66 16 7 C 0.59 7.80 7.81 -12.54 -0.10 7.70 16 8 O -0.54 -8.20 14.56 5.26 0.08 -8.13 16 9 N -0.72 -8.41 3.98 -52.49 -0.21 -8.62 16 10 C 0.11 1.32 2.52 -65.45 -0.16 1.16 16 11 H 0.10 1.15 7.34 -51.93 -0.38 0.77 16 12 C -0.17 -2.12 5.47 -24.24 -0.13 -2.26 16 13 C 0.06 0.81 4.59 -62.31 -0.29 0.53 16 14 H 0.12 2.05 7.97 -51.93 -0.41 1.64 16 15 C -0.11 -1.29 6.50 -23.05 -0.15 -1.44 16 16 C -0.11 -1.09 6.58 -23.05 -0.15 -1.24 16 17 C 0.03 0.39 4.57 -62.56 -0.29 0.11 16 18 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 19 N -0.46 -7.00 5.10 -206.64 -1.05 -8.05 16 20 C 0.01 0.15 3.80 -4.98 -0.02 0.13 16 21 C 0.46 10.21 7.72 -10.98 -0.08 10.12 16 22 O -0.55 -14.77 15.59 5.55 0.09 -14.68 16 23 N -0.59 -13.89 5.09 -10.96 -0.06 -13.95 16 24 C -0.30 -8.50 10.16 -14.93 -0.15 -8.65 16 25 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 26 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 27 N -0.88 -25.66 13.96 55.50 0.77 -24.88 16 28 Si 0.88 19.09 27.74 -169.99 -4.71 14.38 16 29 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 30 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 31 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.11 1.07 6.49 -51.93 -0.34 0.73 16 35 H 0.21 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.16 1.36 7.74 -52.49 -0.41 0.96 16 37 H 0.40 4.31 5.24 -40.82 -0.21 4.10 16 38 H 0.07 1.06 6.81 -51.93 -0.35 0.71 16 39 H 0.08 0.95 7.82 -51.93 -0.41 0.54 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.66 7.82 -51.93 -0.41 0.25 16 42 H 0.07 0.59 7.81 -51.93 -0.41 0.19 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.13 7.36 -51.93 -0.38 0.74 16 45 H 0.07 1.03 4.18 -51.93 -0.22 0.81 16 46 H 0.37 7.52 5.76 -40.82 -0.24 7.29 16 47 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -34.87 375.49 -7.83 -42.69 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -6.25 Total: 15.93 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.22 Total: 1.45 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.54 Total: -55.50 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: 0.24 Total: -24.60 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.38 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.87 -7.83 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110265057.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.819 kcal (2) G-P(sol) polarization free energy of solvation -34.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds