Wall clock time and date at job start Wed Apr 1 2020 05:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.33648 * 125.79974 * 2 1 4 4 C 1.34216 * 110.91039 * 179.97438 * 3 2 1 5 5 C 1.34182 * 109.12140 * 359.74508 * 4 3 2 6 6 C 1.36410 * 125.80035 * 179.97438 * 2 1 3 7 7 C 1.47377 * 127.19602 * 359.96463 * 6 2 1 8 8 O 1.21612 * 119.99956 * 0.02562 * 7 6 2 9 9 N 1.34780 * 120.00347 * 180.02562 * 7 6 2 10 10 C 1.46491 * 120.00091 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.46957 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 H 1.09001 * 110.55664 * 32.10212 * 14 13 11 16 16 C 1.54853 * 110.62816 * 269.03142 * 14 13 11 17 17 C 1.55849 * 103.44394 * 241.50806 * 16 14 13 18 18 H 1.08998 * 115.56267 * 159.56588 * 17 16 14 19 19 C 1.55850 * 105.06386 * 288.17497 * 17 16 14 20 20 C 1.54857 * 103.44302 * 71.82399 * 19 17 16 21 21 C 1.55834 * 103.44828 * 359.97438 * 20 19 17 22 22 H 1.09001 * 115.56031 * 159.56543 * 21 20 19 23 23 N 1.50238 * 101.04957 * 32.93763 * 17 16 14 24 24 C 1.36939 * 130.83742 * 126.06877 * 23 17 16 25 25 H 1.07996 * 119.99461 * 179.97438 * 24 23 17 26 26 C 1.38804 * 120.00054 * 359.95344 * 24 23 17 27 27 N 1.31623 * 120.00252 * 359.97438 * 26 24 23 28 28 Si 1.86796 * 119.99994 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.47063 * 60.00261 * 28 26 24 30 30 H 1.48504 * 109.47344 * 179.97438 * 28 26 24 31 31 H 1.48497 * 109.47336 * 299.99819 * 28 26 24 32 32 H 1.08994 * 109.47121 * 270.00328 * 1 2 3 33 33 H 1.08997 * 109.47135 * 30.01154 * 1 2 3 34 34 H 1.09003 * 109.46891 * 150.00462 * 1 2 3 35 35 H 1.07995 * 125.43636 * 179.97438 * 4 3 2 36 36 H 1.07996 * 127.02110 * 180.26666 * 5 4 3 37 37 H 0.97003 * 119.99349 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.47166 * 60.00164 * 10 9 7 39 39 H 1.08994 * 109.47507 * 299.99870 * 10 9 7 40 40 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 41 41 H 1.08994 * 110.62535 * 359.97438 * 16 14 13 42 42 H 1.08998 * 110.62701 * 123.02303 * 16 14 13 43 43 H 1.09005 * 110.62736 * 313.33698 * 19 17 16 44 44 H 1.08996 * 110.76399 * 190.37878 * 19 17 16 45 45 H 1.09001 * 110.62587 * 241.50926 * 20 19 17 46 46 H 1.09000 * 110.75607 * 118.55589 * 20 19 17 47 47 H 0.96996 * 120.00186 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5860 0.7391 0.0006 5 6 3.6850 -0.5990 0.0066 6 6 2.3050 -1.1064 0.0005 7 6 1.8740 -2.5157 0.0018 8 8 0.6891 -2.7892 0.0022 9 7 2.7931 -3.5015 0.0027 10 6 2.3647 -4.9024 0.0046 11 6 3.5765 -5.7983 0.0046 12 8 4.6885 -5.3143 0.0036 13 7 3.4245 -7.1374 0.0119 14 6 4.6024 -8.0084 0.0179 15 1 5.4236 -7.5377 0.5586 16 6 5.0281 -8.3604 -1.4287 17 6 4.8822 -9.9112 -1.4821 18 1 4.7938 -10.3412 -2.4798 19 6 6.0563 -10.4585 -0.6156 20 6 5.6306 -10.1064 0.8311 21 6 4.2578 -9.3937 0.6416 22 1 3.6165 -9.3663 1.5226 23 7 3.7180 -10.1229 -0.5565 24 6 2.5310 -10.7788 -0.7461 25 1 1.8059 -10.8248 0.0530 26 6 2.2596 -11.3842 -1.9653 27 7 3.1429 -11.3274 -2.9394 28 14 0.6407 -12.2796 -2.2237 29 1 -0.4856 -11.3300 -2.0361 30 1 0.5959 -12.8339 -3.6007 31 1 0.5244 -13.3860 -1.2402 32 1 -0.3633 0.0001 1.0276 33 1 -0.3633 0.8899 -0.5140 34 1 -0.3633 -0.8901 -0.5138 35 1 4.4172 1.4286 0.0003 36 1 4.5929 -1.1839 0.0126 37 1 3.7383 -3.2833 0.0028 38 1 1.7667 -5.1007 -0.8849 39 1 1.7674 -5.0985 0.8950 40 1 2.5351 -7.5247 0.0129 41 1 4.3625 -7.8874 -2.1506 42 1 6.0622 -8.0657 -1.6072 43 1 6.9897 -9.9583 -0.8737 44 1 6.1544 -11.5375 -0.7351 45 1 6.3529 -9.4316 1.2904 46 1 5.5154 -11.0095 1.4305 47 1 2.9534 -11.7507 -3.7913 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110585660.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:20 Heat of formation + Delta-G solvation = -13.322773 kcal Electronic energy + Delta-G solvation = -30194.179780 eV Core-core repulsion = 25958.922187 eV Total energy + Delta-G solvation = -4235.257593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.84559 -40.15734 -39.36396 -38.35036 -34.60321 -33.90598 -33.28439 -32.57503 -32.11824 -29.41485 -29.15268 -28.55558 -27.50079 -26.49144 -24.24891 -23.37397 -21.74562 -21.07313 -20.32562 -19.95191 -19.75709 -18.75025 -18.29727 -17.07743 -16.69539 -16.63905 -16.42569 -15.74273 -15.67371 -15.42076 -14.86826 -14.64434 -14.38320 -13.96725 -13.89606 -13.60491 -13.39617 -13.27068 -13.19592 -13.01824 -12.81815 -12.60855 -12.09486 -12.02250 -11.86061 -11.31814 -11.17916 -10.98225 -10.91482 -10.58519 -10.40719 -10.18347 -10.15086 -10.10633 -9.99708 -9.87178 -9.31846 -9.28565 -9.22041 -9.01169 -8.83990 -8.58181 -7.00083 -5.78754 -3.18222 1.11032 1.77045 2.49167 2.73725 2.90106 3.19143 3.34864 3.39628 3.40910 3.62539 4.22467 4.37255 4.56521 4.58120 4.86852 4.98680 5.06367 5.23215 5.26298 5.28288 5.30817 5.33379 5.42960 5.56070 5.58861 5.64277 5.82743 5.86651 5.99410 5.99635 6.02390 6.08862 6.20011 6.24517 6.36253 6.42841 6.54430 6.67416 6.72040 6.77142 6.89106 7.01978 7.25820 7.40061 7.42480 7.74262 7.81053 8.08529 8.10758 8.39759 9.02792 9.66148 10.46492 11.30315 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015100 B = 0.002288 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.892694 B =12236.829192 C =13531.113593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.079 3.921 3 O -0.177 6.177 4 C -0.040 4.040 5 C -0.186 4.186 6 C -0.245 4.245 7 C 0.592 3.408 8 O -0.544 6.544 9 N -0.708 5.708 10 C 0.100 3.900 11 C 0.506 3.494 12 O -0.553 6.553 13 N -0.697 5.697 14 C 0.128 3.872 15 H 0.081 0.919 16 C -0.143 4.143 17 C 0.156 3.844 18 H 0.152 0.848 19 C -0.139 4.139 20 C -0.128 4.128 21 C 0.125 3.875 22 H 0.089 0.911 23 N -0.590 5.590 24 C -0.218 4.218 25 H 0.078 0.922 26 C -0.008 4.008 27 N -0.919 5.919 28 Si 0.915 3.085 29 H -0.285 1.285 30 H -0.290 1.290 31 H -0.286 1.286 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.209 0.791 36 H 0.159 0.841 37 H 0.412 0.588 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.407 0.593 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.238 19.800 6.500 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.026 3.974 3 O -0.073 6.073 4 C -0.106 4.106 5 C -0.205 4.205 6 C -0.250 4.250 7 C 0.380 3.620 8 O -0.424 6.424 9 N -0.362 5.362 10 C -0.028 4.028 11 C 0.291 3.709 12 O -0.432 6.432 13 N -0.346 5.346 14 C 0.022 3.978 15 H 0.099 0.901 16 C -0.184 4.184 17 C 0.049 3.951 18 H 0.168 0.832 19 C -0.179 4.179 20 C -0.168 4.168 21 C 0.017 3.983 22 H 0.107 0.893 23 N -0.310 5.310 24 C -0.346 4.346 25 H 0.096 0.904 26 C -0.204 4.204 27 N -0.567 5.567 28 Si 0.746 3.254 29 H -0.212 1.212 30 H -0.216 1.216 31 H -0.213 1.213 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.225 0.775 36 H 0.177 0.823 37 H 0.250 0.750 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.242 0.758 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.875 19.994 6.307 20.984 hybrid contribution -0.375 -0.762 -0.124 0.858 sum 0.500 19.233 6.183 20.208 Atomic orbital electron populations 1.20631 0.83651 1.05172 1.04467 1.22832 0.94149 0.83064 0.97346 1.83771 1.17222 1.34942 1.71380 1.23860 0.83469 0.96394 1.06873 1.22953 0.96794 0.94620 1.06113 1.21074 0.93466 0.93602 1.16840 1.17127 0.85228 0.83698 0.75908 1.90765 1.16503 1.84068 1.51030 1.45454 1.10976 1.04652 1.75149 1.21097 0.95671 0.80978 1.05009 1.20370 0.90290 0.83603 0.76673 1.90647 1.26254 1.74968 1.51367 1.45941 1.11430 1.04828 1.72439 1.22688 0.86442 0.90548 0.98148 0.90090 1.23466 0.99155 1.00678 0.95085 1.23695 0.83748 0.89940 0.97668 0.83157 1.23074 0.98540 1.00503 0.95756 1.22883 0.96889 0.99501 0.97533 1.23150 0.93763 0.89835 0.91593 0.89350 1.46515 1.15798 1.60392 1.08325 1.18954 0.91732 1.26184 0.97688 0.90393 1.24705 0.98482 1.01189 0.96071 1.69474 1.34346 1.48690 1.04165 0.86142 0.82782 0.79494 0.76981 1.21189 1.21620 1.21274 0.89270 0.90381 0.87171 0.77490 0.82317 0.75016 0.88172 0.88340 0.75824 0.92170 0.92764 0.93337 0.92598 0.93031 0.92394 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 9.89 36.01 0.36 -0.33 16 2 C 0.08 0.83 7.37 -34.96 -0.26 0.57 16 3 O -0.18 -1.69 10.52 7.66 0.08 -1.61 16 4 C -0.04 -0.31 12.03 29.30 0.35 0.04 16 5 C -0.19 -1.72 10.60 -37.45 -0.40 -2.11 16 6 C -0.25 -2.85 6.31 -103.28 -0.65 -3.50 16 7 C 0.59 7.95 7.81 -12.54 -0.10 7.85 16 8 O -0.54 -8.41 14.85 5.27 0.08 -8.34 16 9 N -0.71 -9.02 5.52 -62.58 -0.35 -9.37 16 10 C 0.10 1.28 6.15 -5.20 -0.03 1.25 16 11 C 0.51 7.68 7.90 -10.98 -0.09 7.60 16 12 O -0.55 -9.70 15.31 5.55 0.09 -9.62 16 13 N -0.70 -11.09 5.07 -51.43 -0.26 -11.35 16 14 C 0.13 2.25 2.80 -65.47 -0.18 2.07 16 15 H 0.08 1.43 7.23 -51.93 -0.38 1.05 16 16 C -0.14 -2.81 6.23 -24.23 -0.15 -2.96 16 17 C 0.16 3.44 4.69 -62.80 -0.29 3.14 16 18 H 0.15 3.83 5.57 -51.93 -0.29 3.54 16 19 C -0.14 -2.67 6.44 -24.23 -0.16 -2.82 16 20 C -0.13 -2.24 6.44 -24.24 -0.16 -2.39 16 21 C 0.13 2.33 5.06 -62.82 -0.32 2.01 16 22 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 23 N -0.59 -13.46 2.99 -145.82 -0.44 -13.90 16 24 C -0.22 -5.53 10.59 -15.06 -0.16 -5.69 16 25 H 0.08 1.90 7.83 -52.49 -0.41 1.49 16 26 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 27 N -0.92 -25.29 10.48 55.49 0.58 -24.71 16 28 Si 0.92 21.09 29.55 -169.99 -5.02 16.07 16 29 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 30 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 31 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.11 1.08 6.49 -51.93 -0.34 0.74 16 35 H 0.21 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.16 1.21 7.74 -52.49 -0.41 0.80 16 37 H 0.41 5.04 6.61 -40.82 -0.27 4.77 16 38 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.41 6.28 8.66 -40.82 -0.35 5.93 16 41 H 0.06 1.28 7.98 -51.93 -0.41 0.86 16 42 H 0.05 0.99 7.82 -51.93 -0.41 0.59 16 43 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.05 0.79 7.82 -51.93 -0.41 0.38 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 386.34 15.07 5.82 5.82 Total: -1.00 -31.20 386.34 -8.34 -39.53 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -6.59 Total: 13.07 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -2.33 Total: 4.39 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -0.46 Total: -59.32 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.24 Total: -19.56 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.20 -8.34 -39.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110585660.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.211 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds