Wall clock time and date at job start Wed Apr 1 2020 04:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 116.99855 * 2 1 4 4 O 1.20828 * 120.00206 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00136 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.78244 * 354.73495 * 5 3 2 7 7 C 1.53240 * 109.62776 * 115.21697 * 5 3 2 8 8 N 1.46901 * 109.33728 * 173.54028 * 7 5 3 9 9 C 1.38098 * 110.99676 * 172.75004 * 8 7 5 10 10 N 1.32264 * 119.90557 * 64.80219 * 9 8 7 11 11 C 1.31974 * 121.86622 * 179.97438 * 10 9 8 12 12 C 1.50696 * 119.27930 * 180.02562 * 11 10 9 13 13 C 1.38684 * 121.44395 * 0.02562 * 11 10 9 14 14 C 1.38004 * 119.62782 * 359.97438 * 13 11 10 15 15 C 1.41007 * 118.28251 * 359.74780 * 14 13 11 16 16 C 1.41017 * 120.70671 * 180.24362 * 15 14 13 17 17 H 1.08003 * 120.00021 * 208.82866 * 16 15 14 18 18 C 1.39951 * 120.00072 * 28.83373 * 16 15 14 19 19 N 1.30869 * 119.99743 * 10.35581 * 18 16 15 20 20 Si 1.86796 * 119.99992 * 190.35145 * 18 16 15 21 21 H 1.48507 * 109.47158 * 60.00273 * 20 18 16 22 22 H 1.48505 * 109.46999 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47522 * 299.99908 * 20 18 16 24 24 C 1.46894 * 111.26996 * 296.89593 * 8 7 5 25 25 C 1.52784 * 109.42598 * 62.96511 * 24 8 7 26 26 N 1.47076 * 109.62913 * 234.24829 * 5 3 2 27 27 C 1.34778 * 120.88199 * 9.10696 * 26 5 3 28 28 C 1.50699 * 120.00178 * 175.37136 * 27 26 5 29 29 O 1.21279 * 120.00200 * 355.37446 * 27 26 5 30 30 H 1.09011 * 109.46746 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47331 * 299.99741 * 1 2 3 32 32 H 1.08994 * 109.47174 * 60.00438 * 1 2 3 33 33 H 1.08995 * 109.49371 * 293.50171 * 7 5 3 34 34 H 1.09005 * 109.48992 * 53.55407 * 7 5 3 35 35 H 1.08992 * 109.46895 * 89.99956 * 12 11 10 36 36 H 1.09001 * 109.47159 * 210.00723 * 12 11 10 37 37 H 1.08999 * 109.47007 * 330.00256 * 12 11 10 38 38 H 1.08001 * 120.18543 * 180.02562 * 13 11 10 39 39 H 1.08006 * 120.86167 * 180.02562 * 14 13 11 40 40 H 0.97003 * 119.99489 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.49518 * 183.06802 * 24 8 7 42 42 H 1.09004 * 109.49563 * 303.12055 * 24 8 7 43 43 H 1.08999 * 109.55988 * 186.61418 * 25 24 8 44 44 H 1.09001 * 109.45283 * 66.18179 * 25 24 8 45 45 H 1.09007 * 109.46900 * 60.00111 * 28 27 26 46 46 H 1.08996 * 109.47686 * 179.97438 * 28 27 26 47 47 H 1.08993 * 109.47382 * 300.00555 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9882 0.2743 0.0951 7 6 4.0487 1.9157 -1.3052 8 7 5.5001 2.1312 -1.2341 9 6 5.9972 2.5570 -2.4501 10 7 5.6253 3.7274 -2.9413 11 6 6.0765 4.1723 -4.0989 12 6 5.6145 5.5152 -4.6031 13 6 6.9666 3.4312 -4.8616 14 6 7.3949 2.2007 -4.4066 15 6 6.9089 1.7412 -3.1653 16 6 7.3168 0.4938 -2.6493 17 1 6.6578 -0.0637 -2.0002 18 6 8.5756 -0.0216 -2.9782 19 7 9.4514 0.7325 -3.5923 20 14 9.0058 -1.7860 -2.5407 21 1 8.0542 -2.7083 -3.2109 22 1 10.3877 -2.0857 -2.9947 23 1 8.9175 -1.9668 -1.0695 24 6 5.8468 3.0757 -0.1639 25 6 5.4369 2.4876 1.1854 26 7 4.0169 2.1093 1.1248 27 6 3.1504 2.5210 2.0715 28 6 3.6507 3.2867 3.2692 29 8 1.9681 2.2752 1.9596 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 3.8196 1.2548 -2.1410 34 1 3.5451 2.8718 -1.4488 35 1 6.2911 6.2905 -4.2439 36 1 5.6108 5.5124 -5.6931 37 1 4.6072 5.7138 -4.2369 38 1 7.3232 3.8151 -5.8060 39 1 8.0881 1.6070 -4.9842 40 1 10.3238 0.3750 -3.8206 41 1 6.9217 3.2562 -0.1720 42 1 5.3190 4.0160 -0.3234 43 1 5.5845 3.2319 1.9678 44 1 6.0421 1.6059 1.3959 45 1 4.1339 4.2056 2.9370 46 1 2.8114 3.5327 3.9198 47 1 4.3686 2.6762 3.8169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158023764.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:08 Heat of formation + Delta-G solvation = -55.899330 kcal Electronic energy + Delta-G solvation = -32139.082820 eV Core-core repulsion = 27901.978968 eV Total energy + Delta-G solvation = -4237.103851 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.00025 -39.30452 -38.84890 -37.17492 -35.97952 -34.38914 -34.24467 -31.93792 -31.03539 -30.31918 -29.41336 -27.92885 -27.74930 -26.57743 -24.22454 -23.90799 -22.09465 -21.29841 -20.75177 -20.30094 -18.71523 -17.78255 -17.34622 -16.91593 -16.47778 -15.91003 -15.63783 -15.58847 -15.36458 -15.14562 -14.70947 -14.44621 -13.97332 -13.75372 -13.51965 -13.19584 -13.15476 -12.94173 -12.88468 -12.60236 -12.29718 -12.15893 -12.01549 -11.94802 -11.75214 -11.64132 -11.51265 -11.44662 -11.20363 -11.09105 -10.98004 -10.85027 -10.58560 -10.55271 -10.03035 -9.91056 -9.40988 -9.28865 -8.78149 -8.43413 -8.22434 -7.67668 -7.45353 -6.86619 -4.48924 2.34560 2.46729 2.61668 2.80020 2.94954 3.00513 3.03641 3.13454 3.25813 3.83350 4.45132 4.51461 4.61501 5.01341 5.05672 5.11394 5.19251 5.26834 5.29226 5.32496 5.36084 5.39123 5.52100 5.58522 5.63764 5.67775 5.71080 5.83373 6.02521 6.08704 6.22723 6.26009 6.34161 6.34608 6.43046 6.47516 6.69674 6.78266 6.86031 7.01531 7.09291 7.37787 7.49422 7.53966 7.63205 7.92795 8.06390 8.16763 8.31094 8.50714 8.63199 8.80544 9.48837 10.03590 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009748 B = 0.004086 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.615718 B = 6850.192077 C = 7826.183436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.363 6.363 3 C 0.473 3.527 4 O -0.474 6.474 5 C 0.161 3.839 6 H 0.111 0.889 7 C 0.064 3.936 8 N -0.443 5.443 9 C 0.148 3.852 10 N -0.486 5.486 11 C -0.003 4.003 12 C -0.074 4.074 13 C -0.145 4.145 14 C -0.128 4.128 15 C 0.096 3.904 16 C -0.415 4.415 17 H 0.091 0.909 18 C 0.069 3.931 19 N -0.796 5.796 20 Si 0.915 3.085 21 H -0.263 1.263 22 H -0.280 1.280 23 H -0.263 1.263 24 C 0.049 3.951 25 C 0.116 3.884 26 N -0.603 5.603 27 C 0.504 3.496 28 C -0.168 4.168 29 O -0.528 6.528 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.098 0.902 39 H 0.130 0.870 40 H 0.283 0.717 41 H 0.089 0.911 42 H 0.044 0.956 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.946 -0.324 7.722 9.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.280 6.280 3 C 0.313 3.687 4 O -0.358 6.358 5 C 0.056 3.944 6 H 0.129 0.871 7 C -0.065 4.065 8 N -0.164 5.164 9 C -0.083 4.083 10 N -0.198 5.198 11 C -0.144 4.144 12 C -0.132 4.132 13 C -0.165 4.165 14 C -0.154 4.154 15 C 0.090 3.910 16 C -0.444 4.444 17 H 0.109 0.891 18 C -0.149 4.149 19 N -0.421 5.421 20 Si 0.739 3.261 21 H -0.188 1.188 22 H -0.205 1.205 23 H -0.187 1.187 24 C -0.079 4.079 25 C -0.006 4.006 26 N -0.340 5.340 27 C 0.293 3.707 28 C -0.227 4.227 29 O -0.405 6.405 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.148 0.852 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.062 0.938 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.926 -0.091 8.177 10.098 hybrid contribution 0.565 -0.390 -0.540 0.873 sum -5.361 -0.481 7.636 9.343 Atomic orbital electron populations 1.23128 0.76693 1.02867 1.02385 1.86431 1.23141 1.33508 1.84873 1.22774 0.90876 0.81746 0.73258 1.90649 1.66568 1.36087 1.42522 1.20785 0.87683 0.97306 0.88674 0.87139 1.22267 0.89979 1.00470 0.93740 1.59356 1.09500 1.44689 1.02873 1.19188 1.05473 0.91246 0.92380 1.66729 1.24221 1.15512 1.13294 1.20012 1.02703 0.97966 0.93737 1.20282 1.00180 0.93700 0.99008 1.21465 0.98933 0.96485 0.99607 1.21707 1.01921 0.95902 0.95908 1.18059 0.89901 0.92842 0.90209 1.19487 0.99466 1.01622 1.23864 0.89114 1.26050 0.96148 0.99577 0.93119 1.69780 1.05708 1.36598 1.30032 0.86244 0.77977 0.81739 0.80123 1.18760 1.20459 1.18729 1.22316 1.01807 0.94061 0.89732 1.21945 0.79277 1.00973 0.98453 1.48102 1.10166 1.52367 1.23334 1.20907 0.85990 0.79649 0.84113 1.21903 1.03814 1.01015 0.96015 1.90841 1.16259 1.56577 1.76779 0.88650 0.91951 0.92345 0.89516 0.92838 0.93308 0.92935 0.92859 0.88343 0.85215 0.90612 0.89301 0.93756 0.89178 0.89792 0.89370 0.89228 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.56 101.05 1.07 1.62 16 2 O -0.36 -5.91 10.56 -39.24 -0.41 -6.33 16 3 C 0.47 8.61 4.97 36.01 0.18 8.78 16 4 O -0.47 -9.92 13.71 -27.20 -0.37 -10.29 16 5 C 0.16 2.70 3.50 -68.64 -0.24 2.46 16 6 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 7 C 0.06 1.21 4.70 -3.70 -0.02 1.19 16 8 N -0.44 -8.74 3.84 -172.66 -0.66 -9.41 16 9 C 0.15 3.40 5.29 -155.02 -0.82 2.58 16 10 N -0.49 -11.21 9.66 -8.11 -0.08 -11.29 16 11 C 0.00 -0.07 6.79 -82.37 -0.56 -0.63 16 12 C -0.07 -1.32 10.15 36.00 0.37 -0.95 16 13 C -0.14 -3.20 9.69 -39.50 -0.38 -3.58 16 14 C -0.13 -3.08 8.76 -38.62 -0.34 -3.42 16 15 C 0.10 2.34 5.57 -106.47 -0.59 1.75 16 16 C -0.41 -9.87 8.67 -37.89 -0.33 -10.20 16 17 H 0.09 2.10 7.65 -52.48 -0.40 1.70 16 18 C 0.07 1.57 5.28 -17.32 -0.09 1.47 16 19 N -0.80 -18.78 10.87 55.55 0.60 -18.18 16 20 Si 0.91 17.26 29.57 -169.99 -5.03 12.24 16 21 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 22 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 23 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 24 C 0.05 0.83 5.35 -3.94 -0.02 0.81 16 25 C 0.12 1.50 6.46 -3.84 -0.02 1.47 16 26 N -0.60 -9.12 3.02 -166.51 -0.50 -9.62 16 27 C 0.50 7.71 7.60 -10.99 -0.08 7.63 16 28 C -0.17 -1.69 8.75 36.01 0.32 -1.37 16 29 O -0.53 -10.14 12.31 -19.97 -0.25 -10.38 16 30 H 0.10 0.89 8.14 -51.92 -0.42 0.46 16 31 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 32 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 33 H 0.09 1.67 8.09 -51.93 -0.42 1.25 16 34 H 0.05 1.13 8.00 -51.93 -0.42 0.72 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 39 H 0.13 3.18 6.31 -52.48 -0.33 2.85 16 40 H 0.28 6.14 8.30 -40.82 -0.34 5.80 16 41 H 0.09 1.54 8.09 -51.93 -0.42 1.12 16 42 H 0.04 0.81 8.02 -51.93 -0.42 0.39 16 43 H 0.09 0.87 6.04 -51.93 -0.31 0.55 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.09 0.77 7.46 -51.93 -0.39 0.38 16 46 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 47 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 384.28 15.07 5.79 5.79 Total: -1.00 -30.96 384.28 -9.37 -40.33 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.88 Total: 7.51 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -1.58 Total: 9.63 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.64 Total: -48.50 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -1.03 Total: -27.00 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.96 -9.37 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158023764.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.566 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds