Wall clock time and date at job start Wed Apr 1 2020 04:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34236 * 116.99722 * 2 1 4 4 O 1.20824 * 119.99815 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99889 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.62974 * 5.15293 * 5 3 2 7 7 C 1.53240 * 109.79137 * 125.64907 * 5 3 2 8 8 N 1.46891 * 109.33950 * 173.63075 * 7 5 3 9 9 C 1.38375 * 110.99906 * 172.74375 * 8 7 5 10 10 C 1.39699 * 119.43053 * 180.32938 * 9 8 7 11 11 C 1.36569 * 119.49117 * 179.71567 * 10 9 8 12 12 C 1.41323 * 118.40895 * 0.56844 * 11 10 9 13 13 C 1.41192 * 120.57041 * 179.70410 * 12 11 10 14 14 H 1.08002 * 119.99927 * 185.87045 * 13 12 11 15 15 C 1.39872 * 120.00003 * 5.87111 * 13 12 11 16 16 N 1.30895 * 120.00107 * 34.56903 * 15 13 12 17 17 Si 1.86801 * 119.99822 * 214.28826 * 15 13 12 18 18 H 1.48505 * 109.47229 * 265.28027 * 17 15 13 19 19 H 1.48506 * 109.47358 * 25.27582 * 17 15 13 20 20 H 1.48501 * 109.47219 * 145.28097 * 17 15 13 21 21 C 1.40758 * 118.85560 * 359.43376 * 12 11 10 22 22 C 1.50694 * 119.81335 * 180.27382 * 21 12 11 23 23 N 1.31487 * 120.36739 * 0.29496 * 21 12 11 24 24 C 1.46901 * 111.27476 * 296.89373 * 8 7 5 25 25 C 1.53239 * 109.33448 * 63.10381 * 24 8 7 26 26 N 1.47077 * 108.52659 * 306.17188 * 25 24 8 27 27 C 1.34776 * 120.88199 * 231.16673 * 26 25 24 28 28 C 1.50696 * 120.00145 * 356.53374 * 27 26 25 29 29 O 1.21279 * 119.99946 * 176.52822 * 27 26 25 30 30 H 1.08996 * 109.47626 * 299.99908 * 1 2 3 31 31 H 1.08999 * 109.47235 * 60.00445 * 1 2 3 32 32 H 1.09009 * 109.47141 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.48801 * 53.66938 * 7 5 3 34 34 H 1.09000 * 109.49064 * 293.59354 * 7 5 3 35 35 H 1.08003 * 120.25583 * 359.97438 * 10 9 8 36 36 H 1.08007 * 120.79440 * 180.27341 * 11 10 9 37 37 H 0.96999 * 119.99904 * 179.72446 * 16 15 13 38 38 H 1.09004 * 109.47495 * 90.00050 * 22 21 12 39 39 H 1.09008 * 109.47347 * 209.99964 * 22 21 12 40 40 H 1.09004 * 109.47522 * 329.99675 * 22 21 12 41 41 H 1.08994 * 109.49422 * 183.06595 * 24 8 7 42 42 H 1.08998 * 109.49078 * 303.12007 * 24 8 7 43 43 H 1.08997 * 109.62992 * 65.88656 * 25 24 8 44 44 H 1.09006 * 109.62189 * 186.46269 * 25 24 8 45 45 H 1.08999 * 109.47401 * 59.99617 * 28 27 26 46 46 H 1.08997 * 109.47342 * 180.02562 * 28 27 26 47 47 H 1.09003 * 109.46654 * 299.99545 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9855 0.2730 -0.0913 7 6 4.0408 2.1411 -1.1711 8 7 5.4933 2.3374 -1.0739 9 6 5.9837 2.9769 -2.1987 10 6 7.3512 3.2462 -2.2939 11 6 7.8373 3.8721 -3.4062 12 6 6.9273 4.2380 -4.4236 13 6 7.3794 4.8927 -5.5900 14 1 6.6672 5.2528 -6.3176 15 6 8.7498 5.0748 -5.8031 16 7 9.6012 4.1656 -5.4010 17 14 9.3641 6.6119 -6.6687 18 1 9.5306 6.3312 -8.1175 19 1 8.3800 7.7092 -6.4871 20 1 10.6702 7.0175 -6.0899 21 6 5.5632 3.9335 -4.2566 22 6 4.5750 4.3083 -5.3307 23 7 5.1465 3.3242 -3.1685 24 6 5.8515 3.0714 0.1471 25 6 5.4511 2.2434 1.3728 26 7 4.0281 1.8907 1.2539 27 6 3.1704 2.1252 2.2667 28 6 3.6788 2.6842 3.5706 29 8 1.9894 1.8863 2.1288 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.5398 3.1085 -1.1345 34 1 3.8031 1.6432 -2.1111 35 1 8.0194 2.9579 -1.4959 36 1 8.8914 4.0865 -3.5037 37 1 10.5512 4.2901 -5.5524 38 1 4.4843 3.4885 -6.0433 39 1 3.6032 4.5051 -4.8777 40 1 4.9223 5.2027 -5.8481 41 1 6.9269 3.2482 0.1631 42 1 5.3257 4.0260 0.1650 43 1 6.0515 1.3346 1.4128 44 1 5.6086 2.8298 2.2781 45 1 4.1473 3.6521 3.3929 46 1 2.8461 2.8048 4.2635 47 1 4.4108 1.9993 3.9987 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158024902.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:15 Heat of formation + Delta-G solvation = -59.949789 kcal Electronic energy + Delta-G solvation = -31482.596300 eV Core-core repulsion = 27245.316808 eV Total energy + Delta-G solvation = -4237.279492 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.12113 -39.41126 -38.97873 -37.39028 -36.06863 -34.94868 -33.77673 -32.23312 -31.23472 -30.64229 -29.58449 -27.93154 -27.11565 -26.98101 -24.66990 -23.97178 -22.11475 -21.44362 -20.76085 -20.09254 -18.95865 -17.87897 -17.44370 -17.01725 -16.66654 -16.11830 -15.79569 -15.56418 -15.40538 -15.34220 -14.92923 -14.31136 -14.15939 -13.79212 -13.65208 -13.46899 -13.10183 -12.92137 -12.87669 -12.72175 -12.39367 -12.37944 -12.22135 -12.08814 -11.78496 -11.62654 -11.58907 -11.49763 -11.18645 -11.12582 -11.03511 -10.90199 -10.63125 -10.57722 -10.09623 -10.04559 -9.69619 -9.27350 -9.00694 -8.62151 -8.30668 -8.12796 -7.34337 -7.03214 -4.41701 2.23298 2.45131 2.49980 2.81547 2.85559 2.93309 2.95654 3.08903 3.15046 3.71681 4.17221 4.41056 4.44973 4.84577 4.88003 4.94663 5.03521 5.13811 5.16766 5.22183 5.24368 5.32777 5.34845 5.45955 5.54238 5.62765 5.67813 5.76743 5.96443 6.02142 6.20442 6.23658 6.30666 6.39303 6.61069 6.65704 6.65995 6.72564 6.82744 6.92585 7.16186 7.23912 7.29571 7.30719 7.70800 7.91185 7.92662 8.07289 8.15134 8.36320 8.54081 8.70229 9.57584 9.76135 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.002754 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.230492 B =10165.083820 C =11091.808774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.362 6.362 3 C 0.483 3.517 4 O -0.490 6.490 5 C 0.155 3.845 6 H 0.107 0.893 7 C 0.077 3.923 8 N -0.458 5.458 9 C 0.138 3.862 10 C -0.135 4.135 11 C -0.150 4.150 12 C 0.059 3.941 13 C -0.441 4.441 14 H 0.091 0.909 15 C 0.083 3.917 16 N -0.758 5.758 17 Si 0.902 3.098 18 H -0.267 1.267 19 H -0.256 1.256 20 H -0.272 1.272 21 C 0.005 3.995 22 C -0.069 4.069 23 N -0.481 5.481 24 C 0.038 3.962 25 C 0.116 3.884 26 N -0.604 5.604 27 C 0.507 3.493 28 C -0.167 4.167 29 O -0.526 6.526 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.133 0.867 37 H 0.286 0.714 38 H 0.049 0.951 39 H 0.045 0.955 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.002 -4.000 12.160 13.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.279 6.279 3 C 0.325 3.675 4 O -0.376 6.376 5 C 0.050 3.950 6 H 0.125 0.875 7 C -0.052 4.052 8 N -0.178 5.178 9 C -0.091 4.091 10 C -0.157 4.157 11 C -0.176 4.176 12 C 0.054 3.946 13 C -0.468 4.468 14 H 0.109 0.891 15 C -0.140 4.140 16 N -0.380 5.380 17 Si 0.725 3.275 18 H -0.192 1.192 19 H -0.179 1.179 20 H -0.197 1.197 21 C -0.138 4.138 22 C -0.126 4.126 23 N -0.193 5.193 24 C -0.090 4.090 25 C -0.006 4.006 26 N -0.341 5.341 27 C 0.296 3.704 28 C -0.227 4.227 29 O -0.404 6.404 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.151 0.849 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.059 0.941 43 H 0.102 0.898 44 H 0.112 0.888 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.281 -4.575 12.255 14.107 hybrid contribution 0.981 1.506 -0.494 1.864 sum -4.300 -3.068 11.761 12.893 Atomic orbital electron populations 1.23126 0.76554 1.02848 1.02457 1.86404 1.23273 1.33429 1.84785 1.22581 0.90639 0.81833 0.72477 1.90631 1.66432 1.36211 1.44311 1.20929 0.88149 0.99951 0.85994 0.87502 1.21956 0.88511 0.99193 0.95552 1.59241 1.11434 1.46063 1.01083 1.18554 0.90114 1.07575 0.92862 1.20740 0.93384 1.02566 0.99028 1.21453 1.00775 1.02271 0.93077 1.18226 0.91592 0.91112 0.93684 1.19618 0.91745 1.30861 1.04585 0.89119 1.26100 0.97082 0.96755 0.94074 1.69929 1.04742 1.30098 1.33231 0.86388 0.78998 0.82338 0.79780 1.19171 1.17903 1.19707 1.20564 0.92876 1.05473 0.94912 1.20222 0.96312 1.00370 0.95729 1.66619 1.38849 1.11456 1.02368 1.22672 1.02160 0.94985 0.89201 1.22011 0.79412 1.00432 0.98786 1.48241 1.10144 1.62181 1.13563 1.20987 0.85921 0.77740 0.85745 1.21890 1.03954 1.02560 0.94258 1.90730 1.16372 1.52289 1.80983 0.91874 0.92283 0.88695 0.92484 0.88296 0.88268 0.84910 0.90241 0.93238 0.93557 0.91795 0.88691 0.94064 0.89772 0.88811 0.89176 0.88977 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.62 16 2 O -0.36 -5.70 10.56 -41.82 -0.44 -6.15 16 3 C 0.48 8.48 4.48 36.00 0.16 8.65 16 4 O -0.49 -10.05 14.44 -26.87 -0.39 -10.44 16 5 C 0.15 2.42 3.50 -68.64 -0.24 2.18 16 6 H 0.11 1.52 8.14 -51.93 -0.42 1.09 16 7 C 0.08 1.39 4.03 -3.70 -0.01 1.37 16 8 N -0.46 -8.26 4.63 -172.83 -0.80 -9.06 16 9 C 0.14 3.02 6.40 -155.13 -0.99 2.03 16 10 C -0.14 -2.96 9.08 -39.64 -0.36 -3.32 16 11 C -0.15 -3.64 8.97 -39.01 -0.35 -3.99 16 12 C 0.06 1.47 5.72 -106.65 -0.61 0.86 16 13 C -0.44 -10.70 8.52 -37.85 -0.32 -11.02 16 14 H 0.09 2.10 6.18 -52.49 -0.32 1.78 16 15 C 0.08 1.89 4.98 -17.34 -0.09 1.80 16 16 N -0.76 -17.62 10.97 55.54 0.61 -17.01 16 17 Si 0.90 16.84 29.67 -169.99 -5.04 11.80 16 18 H -0.27 -4.91 7.11 56.52 0.40 -4.50 16 19 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 20 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 21 C 0.00 0.12 6.86 -81.79 -0.56 -0.44 16 22 C -0.07 -1.43 9.72 36.00 0.35 -1.08 16 23 N -0.48 -11.41 8.52 -8.05 -0.07 -11.48 16 24 C 0.04 0.54 5.41 -3.70 -0.02 0.52 16 25 C 0.12 1.23 6.49 -3.60 -0.02 1.20 16 26 N -0.60 -8.20 3.01 -166.24 -0.50 -8.70 16 27 C 0.51 7.03 7.67 -10.99 -0.08 6.94 16 28 C -0.17 -1.42 8.72 36.00 0.31 -1.11 16 29 O -0.53 -9.45 12.81 -21.58 -0.28 -9.73 16 30 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 31 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 32 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 33 H 0.06 1.19 7.85 -51.93 -0.41 0.78 16 34 H 0.10 1.92 7.63 -51.93 -0.40 1.53 16 35 H 0.10 1.90 7.13 -52.48 -0.37 1.52 16 36 H 0.13 3.25 5.68 -52.48 -0.30 2.95 16 37 H 0.29 5.95 8.30 -40.82 -0.34 5.61 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 40 H 0.06 1.27 6.27 -51.93 -0.33 0.94 16 41 H 0.09 1.26 6.60 -51.93 -0.34 0.92 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.09 0.68 6.04 -51.93 -0.31 0.37 16 45 H 0.09 0.64 7.52 -51.93 -0.39 0.25 16 46 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 47 H 0.09 0.54 8.11 -51.93 -0.42 0.12 16 LS Contribution 377.58 15.07 5.69 5.69 Total: -1.00 -31.84 377.58 -9.52 -41.36 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.53 Total: 7.50 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -1.77 Total: 6.22 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.76 Total: -46.26 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -1.11 Total: -26.31 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -5.04 Total: 11.80 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.84 -9.52 -41.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158024902.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.587 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds