Wall clock time and date at job start Wed Apr 1 2020 04:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34236 * 116.99722 * 2 1 4 4 O 1.20824 * 119.99815 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99889 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.62974 * 5.15293 * 5 3 2 7 7 C 1.53240 * 109.79137 * 125.64907 * 5 3 2 8 8 N 1.46891 * 109.33950 * 173.63075 * 7 5 3 9 9 C 1.38375 * 110.99906 * 172.74375 * 8 7 5 10 10 C 1.39699 * 119.43053 * 180.32938 * 9 8 7 11 11 C 1.36569 * 119.49117 * 179.71567 * 10 9 8 12 12 C 1.41323 * 118.40895 * 0.56844 * 11 10 9 13 13 C 1.41192 * 120.57041 * 179.70410 * 12 11 10 14 14 H 1.08002 * 119.99927 * 185.87045 * 13 12 11 15 15 C 1.39872 * 120.00003 * 5.87111 * 13 12 11 16 16 N 1.30895 * 120.00107 * 34.56903 * 15 13 12 17 17 Si 1.86801 * 119.99822 * 214.28826 * 15 13 12 18 18 H 1.48505 * 109.47229 * 265.28027 * 17 15 13 19 19 H 1.48506 * 109.47358 * 25.27582 * 17 15 13 20 20 H 1.48501 * 109.47219 * 145.28097 * 17 15 13 21 21 C 1.40758 * 118.85560 * 359.43376 * 12 11 10 22 22 C 1.50694 * 119.81335 * 180.27382 * 21 12 11 23 23 N 1.31487 * 120.36739 * 0.29496 * 21 12 11 24 24 C 1.46901 * 111.27476 * 296.89373 * 8 7 5 25 25 C 1.53239 * 109.33448 * 63.10381 * 24 8 7 26 26 N 1.47077 * 108.52659 * 306.17188 * 25 24 8 27 27 C 1.34776 * 120.88199 * 231.16673 * 26 25 24 28 28 C 1.50696 * 120.00145 * 356.53374 * 27 26 25 29 29 O 1.21279 * 119.99946 * 176.52822 * 27 26 25 30 30 H 1.08996 * 109.47626 * 299.99908 * 1 2 3 31 31 H 1.08999 * 109.47235 * 60.00445 * 1 2 3 32 32 H 1.09009 * 109.47141 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.48801 * 53.66938 * 7 5 3 34 34 H 1.09000 * 109.49064 * 293.59354 * 7 5 3 35 35 H 1.08003 * 120.25583 * 359.97438 * 10 9 8 36 36 H 1.08007 * 120.79440 * 180.27341 * 11 10 9 37 37 H 0.96999 * 119.99904 * 179.72446 * 16 15 13 38 38 H 1.09004 * 109.47495 * 90.00050 * 22 21 12 39 39 H 1.09008 * 109.47347 * 209.99964 * 22 21 12 40 40 H 1.09004 * 109.47522 * 329.99675 * 22 21 12 41 41 H 1.08994 * 109.49422 * 183.06595 * 24 8 7 42 42 H 1.08998 * 109.49078 * 303.12007 * 24 8 7 43 43 H 1.08997 * 109.62992 * 65.88656 * 25 24 8 44 44 H 1.09006 * 109.62189 * 186.46269 * 25 24 8 45 45 H 1.08999 * 109.47401 * 59.99617 * 28 27 26 46 46 H 1.08997 * 109.47342 * 180.02562 * 28 27 26 47 47 H 1.09003 * 109.46654 * 299.99545 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9855 0.2730 -0.0913 7 6 4.0408 2.1411 -1.1711 8 7 5.4933 2.3374 -1.0739 9 6 5.9837 2.9769 -2.1987 10 6 7.3512 3.2462 -2.2939 11 6 7.8373 3.8721 -3.4062 12 6 6.9273 4.2380 -4.4236 13 6 7.3794 4.8927 -5.5900 14 1 6.6672 5.2528 -6.3176 15 6 8.7498 5.0748 -5.8031 16 7 9.6012 4.1656 -5.4010 17 14 9.3641 6.6119 -6.6687 18 1 9.5306 6.3312 -8.1175 19 1 8.3800 7.7092 -6.4871 20 1 10.6702 7.0175 -6.0899 21 6 5.5632 3.9335 -4.2566 22 6 4.5750 4.3083 -5.3307 23 7 5.1465 3.3242 -3.1685 24 6 5.8515 3.0714 0.1471 25 6 5.4511 2.2434 1.3728 26 7 4.0281 1.8907 1.2539 27 6 3.1704 2.1252 2.2667 28 6 3.6788 2.6842 3.5706 29 8 1.9894 1.8863 2.1288 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.5398 3.1085 -1.1345 34 1 3.8031 1.6432 -2.1111 35 1 8.0194 2.9579 -1.4959 36 1 8.8914 4.0865 -3.5037 37 1 10.5512 4.2901 -5.5524 38 1 4.4843 3.4885 -6.0433 39 1 3.6032 4.5051 -4.8777 40 1 4.9223 5.2027 -5.8481 41 1 6.9269 3.2482 0.1631 42 1 5.3257 4.0260 0.1650 43 1 6.0515 1.3346 1.4128 44 1 5.6086 2.8298 2.2781 45 1 4.1473 3.6521 3.3929 46 1 2.8461 2.8048 4.2635 47 1 4.4108 1.9993 3.9987 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158024902.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:14 Heat of formation + Delta-G solvation = -79.057431 kcal Electronic energy + Delta-G solvation = -31483.424870 eV Core-core repulsion = 27245.316808 eV Total energy + Delta-G solvation = -4238.108062 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.36018 -40.90837 -40.30630 -38.81345 -37.40617 -36.41499 -35.35633 -33.56654 -32.80436 -32.25336 -30.58394 -29.07263 -28.70881 -28.35762 -26.16775 -25.36828 -23.53690 -22.71696 -22.31434 -21.72002 -20.13402 -19.28418 -19.03758 -18.27304 -17.96399 -17.54031 -17.06111 -17.03755 -16.60091 -16.52967 -16.47694 -15.68896 -15.56651 -15.28456 -14.82359 -14.73121 -14.50645 -14.37705 -14.16655 -14.06775 -13.90767 -13.51298 -13.28961 -13.22811 -13.16782 -13.01652 -12.93600 -12.85158 -12.76569 -12.63120 -12.47031 -12.34669 -12.13441 -11.79043 -11.74753 -11.46544 -11.00391 -10.84455 -10.48944 -10.12934 -9.94135 -9.84408 -9.05318 -8.73875 -6.21938 0.79215 1.03225 1.08183 1.38828 1.39166 1.47313 1.59116 1.62486 1.98211 2.16186 2.54948 2.93279 3.40543 3.62544 3.71546 3.79367 3.82609 3.97644 4.02900 4.25491 4.27100 4.29758 4.31931 4.41847 4.45911 4.54295 4.61270 4.62497 4.65716 4.67306 4.77669 4.88796 4.94403 4.96798 5.00785 5.06525 5.13024 5.14967 5.23029 5.38528 5.48762 5.55619 5.73161 5.91844 6.16508 6.19509 6.33747 6.59125 6.74513 6.75223 6.92397 6.98794 7.78956 8.09348 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.002754 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.230492 B =10165.083820 C =11091.808774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.365 6.365 3 C 0.483 3.517 4 O -0.529 6.529 5 C 0.159 3.841 6 H 0.126 0.874 7 C 0.092 3.908 8 N -0.455 5.455 9 C 0.138 3.862 10 C -0.134 4.134 11 C -0.170 4.170 12 C 0.030 3.970 13 C -0.470 4.470 14 H 0.092 0.908 15 C 0.049 3.951 16 N -0.784 5.784 17 Si 0.975 3.025 18 H -0.259 1.259 19 H -0.260 1.260 20 H -0.262 1.262 21 C -0.025 4.025 22 C -0.061 4.061 23 N -0.500 5.500 24 C 0.034 3.966 25 C 0.121 3.879 26 N -0.605 5.605 27 C 0.495 3.505 28 C -0.158 4.158 29 O -0.573 6.573 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.136 0.864 33 H 0.022 0.978 34 H 0.077 0.923 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.297 0.703 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.022 0.978 43 H 0.109 0.891 44 H 0.139 0.861 45 H 0.110 0.890 46 H 0.091 0.909 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.439 -4.248 14.136 14.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.281 6.281 3 C 0.326 3.674 4 O -0.418 6.418 5 C 0.053 3.947 6 H 0.144 0.856 7 C -0.037 4.037 8 N -0.175 5.175 9 C -0.092 4.092 10 C -0.156 4.156 11 C -0.196 4.196 12 C 0.026 3.974 13 C -0.498 4.498 14 H 0.109 0.891 15 C -0.172 4.172 16 N -0.407 5.407 17 Si 0.794 3.206 18 H -0.183 1.183 19 H -0.184 1.184 20 H -0.186 1.186 21 C -0.167 4.167 22 C -0.118 4.118 23 N -0.213 5.213 24 C -0.093 4.093 25 C 0.001 3.999 26 N -0.342 5.342 27 C 0.287 3.713 28 C -0.216 4.216 29 O -0.454 6.454 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.154 0.846 33 H 0.041 0.959 34 H 0.095 0.905 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.130 0.870 42 H 0.041 0.959 43 H 0.127 0.873 44 H 0.157 0.843 45 H 0.129 0.871 46 H 0.110 0.890 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.696 -4.844 14.243 15.492 hybrid contribution 0.444 1.482 -1.034 1.861 sum -3.252 -3.362 13.208 14.012 Atomic orbital electron populations 1.23402 0.74884 1.05325 1.01781 1.86389 1.24980 1.32492 1.84279 1.22938 0.91378 0.81744 0.71329 1.90604 1.67404 1.37463 1.46305 1.20785 0.87178 1.00367 0.86352 0.85599 1.21662 0.88330 0.97658 0.96034 1.59218 1.10956 1.46061 1.01232 1.19036 0.90387 1.06226 0.93545 1.20977 0.93826 1.01674 0.99150 1.21539 1.00523 1.03491 0.94004 1.18558 0.92259 0.91983 0.94638 1.19844 0.92953 1.32059 1.04895 0.89060 1.26874 0.96572 0.99162 0.94616 1.69921 1.05529 1.31481 1.33781 0.85304 0.78419 0.77967 0.78867 1.18338 1.18356 1.18635 1.21020 0.93500 1.06249 0.95885 1.20177 0.95832 1.00694 0.95135 1.66720 1.39577 1.12099 1.02901 1.22855 1.02981 0.94639 0.88817 1.22292 0.77695 1.01588 0.98361 1.48452 1.11446 1.61806 1.12496 1.22074 0.85304 0.76774 0.87164 1.21955 1.04828 1.03933 0.90896 1.90709 1.18584 1.54248 1.81841 0.93065 0.92493 0.84611 0.95948 0.90506 0.85219 0.85512 0.89139 0.92798 0.93129 0.91222 0.87035 0.95926 0.87291 0.84321 0.87136 0.89002 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.98 10.56 113.37 1.20 2.17 16 2 O -0.37 -11.48 10.56 -49.03 -0.52 -11.99 16 3 C 0.48 17.25 4.48 71.23 0.32 17.57 16 4 O -0.53 -22.56 14.44 29.74 0.43 -22.14 16 5 C 0.16 4.90 3.50 44.21 0.15 5.06 16 6 H 0.13 3.39 8.14 -2.39 -0.02 3.37 16 7 C 0.09 3.42 4.03 86.39 0.35 3.77 16 8 N -0.45 -16.11 4.63 -700.72 -3.25 -19.35 16 9 C 0.14 6.10 6.40 133.31 0.85 6.95 16 10 C -0.13 -5.86 9.08 22.23 0.20 -5.66 16 11 C -0.17 -8.38 8.97 22.64 0.20 -8.17 16 12 C 0.03 1.57 5.72 -21.18 -0.12 1.45 16 13 C -0.47 -23.39 8.52 23.39 0.20 -23.19 16 14 H 0.09 4.35 6.18 -2.91 -0.02 4.33 16 15 C 0.05 2.23 4.98 85.23 0.42 2.65 16 16 N -0.78 -36.63 10.97 21.82 0.24 -36.39 16 17 Si 0.97 34.26 29.67 68.60 2.04 36.30 16 18 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 19 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 20 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 21 C -0.02 -1.24 6.86 43.22 0.30 -0.94 16 22 C -0.06 -2.63 9.72 71.23 0.69 -1.93 16 23 N -0.50 -24.54 8.52 -179.37 -1.53 -26.07 16 24 C 0.03 0.91 5.41 86.38 0.47 1.38 16 25 C 0.12 2.09 6.49 86.35 0.56 2.65 16 26 N -0.61 -15.15 3.01 -798.24 -2.40 -17.56 16 27 C 0.49 12.77 7.67 87.66 0.67 13.44 16 28 C -0.16 -2.05 8.72 71.23 0.62 -1.43 16 29 O -0.57 -20.47 12.81 22.92 0.29 -20.18 16 30 H 0.05 1.39 8.13 -2.39 -0.02 1.38 16 31 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 32 H 0.14 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.02 0.97 7.85 -2.38 -0.02 0.96 16 34 H 0.08 3.13 7.63 -2.39 -0.02 3.11 16 35 H 0.13 4.71 7.13 -2.91 -0.02 4.69 16 36 H 0.13 6.32 5.68 -2.91 -0.02 6.30 16 37 H 0.30 12.23 8.30 -92.71 -0.77 11.47 16 38 H 0.05 2.21 8.14 -2.38 -0.02 2.20 16 39 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.07 2.85 6.27 -2.39 -0.01 2.84 16 41 H 0.11 2.60 6.60 -2.39 -0.02 2.59 16 42 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.14 1.21 6.04 -2.38 -0.01 1.20 16 45 H 0.11 1.04 7.52 -2.39 -0.02 1.02 16 46 H 0.09 1.26 8.12 -2.39 -0.02 1.24 16 47 H 0.13 0.79 8.11 -2.39 -0.02 0.77 16 Total: -1.00 -74.38 377.58 3.40 -70.99 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 1.00 Total: 30.64 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 7.09 Total: 15.76 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -6.94 Total: -99.37 kcal Atomic # 8 Polarization: -54.51 SS G_CDS: 0.21 Total: -54.31 kcal Atomic # 14 Polarization: 34.26 SS G_CDS: 2.04 Total: 36.30 kcal Total: -74.38 3.40 -70.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158024902.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.072 kcal (2) G-P(sol) polarization free energy of solvation -74.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds