Wall clock time and date at job start Wed Apr 1 2020 05:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.33657 * 125.79701 * 2 1 4 4 C 1.34215 * 110.90673 * 180.02562 * 3 2 1 5 5 C 1.34185 * 109.12231 * 359.70601 * 4 3 2 6 6 C 1.36408 * 125.80426 * 180.02562 * 2 1 3 7 7 C 1.47377 * 127.19426 * 359.97438 * 6 2 1 8 8 O 1.21620 * 119.99776 * 0.02562 * 7 6 2 9 9 N 1.34778 * 120.00356 * 180.02562 * 7 6 2 10 10 C 1.47220 * 136.44889 * 0.03107 * 9 7 6 11 11 C 1.52162 * 87.31006 * 150.82997 * 10 9 7 12 12 H 1.09009 * 113.51647 * 141.29134 * 11 10 9 13 13 C 1.51749 * 112.33945 * 272.08061 * 11 10 9 14 14 C 1.51677 * 113.41713 * 125.41031 * 13 11 10 15 15 N 1.43784 * 111.71205 * 313.28869 * 14 13 11 16 16 C 1.46900 * 111.12812 * 189.05809 * 15 14 13 17 17 C 1.50694 * 109.47023 * 299.49205 * 16 15 14 18 18 O 1.21298 * 120.00333 * 354.29106 * 17 16 15 19 19 N 1.34778 * 120.00214 * 174.28554 * 17 16 15 20 20 C 1.37100 * 120.00374 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99897 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99606 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00602 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99324 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47402 * 60.00328 * 24 22 20 26 26 H 1.48507 * 109.47003 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47527 * 299.99924 * 24 22 20 28 28 C 1.46945 * 111.99516 * 64.28201 * 15 14 13 29 29 C 1.46595 * 136.44757 * 179.97438 * 9 7 6 30 30 H 1.09001 * 112.82456 * 95.36605 * 29 9 7 31 31 H 1.09003 * 109.47378 * 270.00439 * 1 2 3 32 32 H 1.08997 * 109.47302 * 30.00466 * 1 2 3 33 33 H 1.08999 * 109.46973 * 150.00319 * 1 2 3 34 34 H 1.07999 * 125.44321 * 180.02562 * 4 3 2 35 35 H 1.07998 * 127.01994 * 180.27378 * 5 4 3 36 36 H 1.08997 * 113.51844 * 266.40928 * 10 9 7 37 37 H 1.08999 * 113.51964 * 36.93966 * 10 9 7 38 38 H 1.09000 * 108.69354 * 246.42727 * 13 11 10 39 39 H 1.08998 * 108.69391 * 4.52167 * 13 11 10 40 40 H 1.08990 * 109.10722 * 73.12883 * 14 13 11 41 41 H 1.09007 * 109.09761 * 192.15822 * 14 13 11 42 42 H 1.09003 * 109.46769 * 59.48780 * 16 15 14 43 43 H 1.08997 * 109.47354 * 179.49118 * 16 15 14 44 44 H 0.97002 * 119.99622 * 0.02562 * 19 17 16 45 45 H 0.96996 * 119.99784 * 179.97438 * 23 22 20 46 46 H 1.08997 * 109.49456 * 176.93309 * 28 15 14 47 47 H 1.09000 * 109.49414 * 56.87236 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2887 1.0841 0.0000 4 6 3.5858 0.7392 -0.0006 5 6 3.6849 -0.5990 0.0056 6 6 2.3050 -1.1063 -0.0005 7 6 1.8741 -2.5157 -0.0006 8 8 0.6890 -2.7892 -0.0007 9 7 2.7932 -3.5015 -0.0006 10 6 4.2627 -3.5901 0.0000 11 6 4.1111 -4.9109 0.7402 12 1 4.8254 -5.6712 0.4240 13 6 4.0436 -4.7245 2.2447 14 6 2.8159 -5.3534 2.8756 15 7 1.6190 -5.0304 2.1473 16 6 0.4208 -5.4608 2.8801 17 6 0.4631 -6.9540 3.0790 18 8 1.3442 -7.6098 2.5643 19 7 -0.4781 -7.5608 3.8290 20 6 -0.4400 -8.9194 4.0095 21 1 0.3444 -9.5032 3.5511 22 6 -1.4107 -9.5449 4.7822 23 7 -2.3655 -8.8346 5.3396 24 14 -1.3584 -11.3959 5.0288 25 1 -0.0803 -11.7720 5.6848 26 1 -2.4969 -11.8135 5.8860 27 1 -1.4568 -12.0738 3.7112 28 6 1.6340 -5.5891 0.7883 29 6 2.7789 -4.9673 -0.0002 30 1 2.8685 -5.3913 -1.0004 31 1 -0.3634 0.0001 1.0277 32 1 -0.3634 0.8899 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 4.4172 1.4286 -0.0003 35 1 4.5928 -1.1838 0.0109 36 1 4.6935 -3.6784 -0.9973 37 1 4.7447 -2.8192 0.6012 38 1 4.9327 -5.1689 2.6921 39 1 4.0391 -3.6570 2.4646 40 1 2.9333 -6.4370 2.8814 41 1 2.7222 -5.0004 3.9026 42 1 0.3913 -4.9657 3.8508 43 1 -0.4690 -5.1953 2.3095 44 1 -1.1829 -7.0365 4.2403 45 1 -3.0433 -9.2714 5.8787 46 1 0.6886 -5.3671 0.2933 47 1 1.7726 -6.6690 0.8404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221252804.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:18 Heat of formation + Delta-G solvation = 4.512352 kcal Electronic energy + Delta-G solvation = -31473.587114 eV Core-core repulsion = 27239.102910 eV Total energy + Delta-G solvation = -4234.484204 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.69852 -41.15668 -38.75125 -37.78974 -35.77870 -33.80011 -33.12298 -32.13742 -31.77085 -31.26441 -29.60327 -28.51464 -26.85736 -25.78455 -24.19072 -23.84987 -22.84077 -21.64186 -21.09545 -19.56015 -19.23928 -18.27196 -17.88179 -17.27709 -16.55846 -16.26189 -16.09124 -15.79502 -15.57747 -15.04341 -14.64696 -14.39635 -14.19366 -14.05573 -13.77156 -13.53335 -13.43452 -13.32433 -13.05681 -12.96896 -12.93742 -12.75586 -12.23153 -12.14918 -11.84857 -11.71614 -11.49329 -11.23224 -11.10033 -11.04739 -10.67118 -10.45862 -10.30623 -10.22529 -10.07281 -9.93116 -9.51270 -9.43025 -9.08008 -8.76235 -8.42533 -7.97089 -7.23422 -6.42506 -3.84087 1.32859 1.91864 2.63321 2.98127 3.17749 3.24228 3.28277 3.52885 3.87372 4.15630 4.20641 4.34888 4.48461 4.51840 4.71046 4.79457 5.04956 5.06934 5.09020 5.21093 5.24463 5.33335 5.36813 5.38433 5.43337 5.47838 5.51876 5.68337 5.71061 5.77858 5.89660 5.95883 6.04621 6.09187 6.13126 6.17362 6.21887 6.30745 6.33854 6.36726 6.58456 6.78037 6.89236 7.52307 7.52917 7.73503 7.96707 8.04002 8.44430 8.59157 9.15394 9.52957 10.03545 10.73904 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019235 B = 0.002588 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.366772 B =10815.662591 C =11689.270580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.072 3.928 3 O -0.179 6.179 4 C -0.046 4.046 5 C -0.190 4.190 6 C -0.232 4.232 7 C 0.623 3.377 8 O -0.531 6.531 9 N -0.620 5.620 10 C 0.096 3.904 11 C -0.114 4.114 12 H 0.093 0.907 13 C -0.086 4.086 14 C 0.045 3.955 15 N -0.505 5.505 16 C 0.049 3.951 17 C 0.408 3.592 18 O -0.596 6.596 19 N -0.557 5.557 20 C -0.302 4.302 21 H 0.102 0.898 22 C 0.024 3.976 23 N -0.899 5.899 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.045 3.955 29 C 0.146 3.854 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.205 0.795 35 H 0.156 0.844 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.393 0.607 45 H 0.273 0.727 46 H 0.076 0.924 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.975 17.926 -10.275 24.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.019 3.981 3 O -0.075 6.075 4 C -0.112 4.112 5 C -0.209 4.209 6 C -0.237 4.237 7 C 0.415 3.585 8 O -0.409 6.409 9 N -0.355 5.355 10 C -0.028 4.028 11 C -0.134 4.134 12 H 0.111 0.889 13 C -0.123 4.123 14 C -0.084 4.084 15 N -0.228 5.228 16 C -0.082 4.082 17 C 0.194 3.806 18 O -0.484 6.484 19 N -0.192 5.192 20 C -0.432 4.432 21 H 0.119 0.881 22 C -0.179 4.179 23 N -0.540 5.540 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.199 1.199 28 C -0.084 4.084 29 C 0.043 3.957 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.128 0.872 34 H 0.222 0.778 35 H 0.174 0.826 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.226 0.774 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.470 18.269 -10.524 24.495 hybrid contribution -0.053 -1.500 0.530 1.592 sum 12.417 16.769 -9.994 23.136 Atomic orbital electron populations 1.20601 0.83702 1.04862 1.04541 1.22819 0.94118 0.83028 0.98107 1.83754 1.17121 1.35094 1.71577 1.23816 0.83599 0.96384 1.07361 1.23073 0.97038 0.94387 1.06440 1.21181 0.93072 0.93943 1.15467 1.16423 0.84144 0.82168 0.75808 1.90751 1.15838 1.83318 1.50968 1.49191 1.06615 1.06602 1.73128 1.23127 0.82147 0.97476 1.00017 1.22176 0.97555 0.97295 0.96328 0.88900 1.20741 0.98175 1.01131 0.92299 1.21301 0.89314 1.01402 0.96362 1.60916 1.01473 1.58376 1.02000 1.21975 0.94353 0.92380 0.99508 1.21192 0.84892 0.90262 0.84262 1.90385 1.37921 1.66551 1.53504 1.42064 1.25130 1.08353 1.43677 1.19654 1.11655 0.82798 1.29074 0.88064 1.25285 0.95471 1.00545 0.96554 1.69605 1.14437 1.36635 1.33279 0.85931 0.77730 0.82218 0.78404 1.19925 1.20931 1.19910 1.22161 0.97826 0.99470 0.88897 1.22326 0.95249 0.79893 0.98209 0.89246 0.89251 0.90706 0.87224 0.77845 0.82616 0.89991 0.90513 0.91665 0.92215 0.91358 0.91907 0.89753 0.89258 0.77374 0.91739 0.90517 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 9.89 36.00 0.36 -0.48 16 2 C 0.07 0.87 7.37 -34.97 -0.26 0.61 16 3 O -0.18 -1.93 10.52 7.64 0.08 -1.85 16 4 C -0.05 -0.39 12.03 29.30 0.35 -0.04 16 5 C -0.19 -1.88 10.17 -37.45 -0.38 -2.26 16 6 C -0.23 -3.03 6.31 -103.28 -0.65 -3.69 16 7 C 0.62 9.57 7.98 -12.54 -0.10 9.47 16 8 O -0.53 -9.65 14.72 5.26 0.08 -9.57 16 9 N -0.62 -8.29 3.26 -191.79 -0.63 -8.91 16 10 C 0.10 0.90 6.64 -11.87 -0.08 0.82 16 11 C -0.11 -1.28 4.48 -91.95 -0.41 -1.69 16 12 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 13 C -0.09 -1.08 5.69 -28.04 -0.16 -1.24 16 14 C 0.04 0.74 4.89 -6.15 -0.03 0.71 16 15 N -0.51 -8.94 4.58 -239.92 -1.10 -10.04 16 16 C 0.05 0.95 5.79 -4.98 -0.03 0.92 16 17 C 0.41 9.54 7.19 -10.99 -0.08 9.46 16 18 O -0.60 -15.19 11.31 5.54 0.06 -15.13 16 19 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 20 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 21 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 22 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 23 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 24 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.04 0.77 4.48 -4.17 -0.02 0.76 16 29 C 0.15 1.99 4.32 -76.28 -0.33 1.66 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.11 1.31 6.48 -51.93 -0.34 0.97 16 34 H 0.20 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.16 1.20 5.55 -52.49 -0.29 0.91 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.64 5.71 -51.93 -0.30 0.34 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.75 7.43 -51.93 -0.39 0.37 16 40 H 0.07 1.35 5.66 -51.93 -0.29 1.06 16 41 H 0.06 1.04 8.01 -51.93 -0.42 0.62 16 42 H 0.08 1.51 8.09 -51.93 -0.42 1.09 16 43 H 0.09 1.69 8.06 -51.93 -0.42 1.27 16 44 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 45 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.08 1.45 7.63 -51.93 -0.40 1.06 16 47 H 0.08 1.69 5.75 -51.93 -0.30 1.39 16 LS Contribution 374.66 15.07 5.65 5.65 Total: -1.00 -33.32 374.66 -8.62 -41.94 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -6.35 Total: 13.03 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -2.06 Total: 7.02 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -1.06 Total: -57.17 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: 0.22 Total: -26.55 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.32 -8.62 -41.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221252804.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.450 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds