Wall clock time and date at job start Wed Apr 1 2020 05:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.33657 * 125.79701 * 2 1 4 4 C 1.34215 * 110.90673 * 180.02562 * 3 2 1 5 5 C 1.34185 * 109.12231 * 359.70601 * 4 3 2 6 6 C 1.36408 * 125.80426 * 180.02562 * 2 1 3 7 7 C 1.47377 * 127.19426 * 359.97438 * 6 2 1 8 8 O 1.21620 * 119.99776 * 0.02562 * 7 6 2 9 9 N 1.34778 * 120.00356 * 180.02562 * 7 6 2 10 10 C 1.47220 * 136.44889 * 0.03107 * 9 7 6 11 11 C 1.52162 * 87.31006 * 150.82997 * 10 9 7 12 12 H 1.09009 * 113.51647 * 141.29134 * 11 10 9 13 13 C 1.51749 * 112.33945 * 272.08061 * 11 10 9 14 14 C 1.51677 * 113.41713 * 125.41031 * 13 11 10 15 15 N 1.43784 * 111.71205 * 313.28869 * 14 13 11 16 16 C 1.46900 * 111.12812 * 189.05809 * 15 14 13 17 17 C 1.50694 * 109.47023 * 299.49205 * 16 15 14 18 18 O 1.21298 * 120.00333 * 354.29106 * 17 16 15 19 19 N 1.34778 * 120.00214 * 174.28554 * 17 16 15 20 20 C 1.37100 * 120.00374 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99897 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99606 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00602 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99324 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47402 * 60.00328 * 24 22 20 26 26 H 1.48507 * 109.47003 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47527 * 299.99924 * 24 22 20 28 28 C 1.46945 * 111.99516 * 64.28201 * 15 14 13 29 29 C 1.46595 * 136.44757 * 179.97438 * 9 7 6 30 30 H 1.09001 * 112.82456 * 95.36605 * 29 9 7 31 31 H 1.09003 * 109.47378 * 270.00439 * 1 2 3 32 32 H 1.08997 * 109.47302 * 30.00466 * 1 2 3 33 33 H 1.08999 * 109.46973 * 150.00319 * 1 2 3 34 34 H 1.07999 * 125.44321 * 180.02562 * 4 3 2 35 35 H 1.07998 * 127.01994 * 180.27378 * 5 4 3 36 36 H 1.08997 * 113.51844 * 266.40928 * 10 9 7 37 37 H 1.08999 * 113.51964 * 36.93966 * 10 9 7 38 38 H 1.09000 * 108.69354 * 246.42727 * 13 11 10 39 39 H 1.08998 * 108.69391 * 4.52167 * 13 11 10 40 40 H 1.08990 * 109.10722 * 73.12883 * 14 13 11 41 41 H 1.09007 * 109.09761 * 192.15822 * 14 13 11 42 42 H 1.09003 * 109.46769 * 59.48780 * 16 15 14 43 43 H 1.08997 * 109.47354 * 179.49118 * 16 15 14 44 44 H 0.97002 * 119.99622 * 0.02562 * 19 17 16 45 45 H 0.96996 * 119.99784 * 179.97438 * 23 22 20 46 46 H 1.08997 * 109.49456 * 176.93309 * 28 15 14 47 47 H 1.09000 * 109.49414 * 56.87236 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2887 1.0841 0.0000 4 6 3.5858 0.7392 -0.0006 5 6 3.6849 -0.5990 0.0056 6 6 2.3050 -1.1063 -0.0005 7 6 1.8741 -2.5157 -0.0006 8 8 0.6890 -2.7892 -0.0007 9 7 2.7932 -3.5015 -0.0006 10 6 4.2627 -3.5901 0.0000 11 6 4.1111 -4.9109 0.7402 12 1 4.8254 -5.6712 0.4240 13 6 4.0436 -4.7245 2.2447 14 6 2.8159 -5.3534 2.8756 15 7 1.6190 -5.0304 2.1473 16 6 0.4208 -5.4608 2.8801 17 6 0.4631 -6.9540 3.0790 18 8 1.3442 -7.6098 2.5643 19 7 -0.4781 -7.5608 3.8290 20 6 -0.4400 -8.9194 4.0095 21 1 0.3444 -9.5032 3.5511 22 6 -1.4107 -9.5449 4.7822 23 7 -2.3655 -8.8346 5.3396 24 14 -1.3584 -11.3959 5.0288 25 1 -0.0803 -11.7720 5.6848 26 1 -2.4969 -11.8135 5.8860 27 1 -1.4568 -12.0738 3.7112 28 6 1.6340 -5.5891 0.7883 29 6 2.7789 -4.9673 -0.0002 30 1 2.8685 -5.3913 -1.0004 31 1 -0.3634 0.0001 1.0277 32 1 -0.3634 0.8899 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 4.4172 1.4286 -0.0003 35 1 4.5928 -1.1838 0.0109 36 1 4.6935 -3.6784 -0.9973 37 1 4.7447 -2.8192 0.6012 38 1 4.9327 -5.1689 2.6921 39 1 4.0391 -3.6570 2.4646 40 1 2.9333 -6.4370 2.8814 41 1 2.7222 -5.0004 3.9026 42 1 0.3913 -4.9657 3.8508 43 1 -0.4690 -5.1953 2.3095 44 1 -1.1829 -7.0365 4.2403 45 1 -3.0433 -9.2714 5.8787 46 1 0.6886 -5.3671 0.2933 47 1 1.7726 -6.6690 0.8404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221252804.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:17 Heat of formation + Delta-G solvation = -19.772027 kcal Electronic energy + Delta-G solvation = -31474.640164 eV Core-core repulsion = 27239.102910 eV Total energy + Delta-G solvation = -4235.537254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.48008 -42.25343 -40.46649 -39.00848 -37.32276 -35.77808 -33.99168 -33.39394 -33.06340 -32.71026 -30.80957 -29.84527 -27.73717 -27.35018 -25.73851 -25.08068 -23.77613 -22.86037 -21.95295 -21.18074 -20.45288 -19.94830 -19.14899 -18.41071 -17.73524 -17.47052 -17.17998 -17.06905 -16.67066 -16.52525 -16.31328 -15.84774 -15.63237 -15.47519 -15.17136 -14.89387 -14.50632 -14.40104 -14.20958 -13.98095 -13.82019 -13.73749 -13.55080 -13.49489 -13.14045 -13.11817 -13.01009 -12.63068 -12.48737 -12.47541 -12.20273 -12.14979 -11.99707 -11.61201 -11.31748 -11.18574 -10.91788 -10.74530 -10.62833 -10.03347 -9.64273 -9.35193 -8.89697 -8.47604 -5.99194 0.43158 1.21180 1.35824 1.38148 1.49625 1.80844 1.96989 2.09984 2.26570 2.49873 2.96790 3.16763 3.21893 3.35482 3.56527 3.69745 3.82922 3.96152 4.04560 4.19093 4.31845 4.34095 4.37788 4.44743 4.50152 4.52004 4.55479 4.58463 4.61661 4.62748 4.74935 4.77497 4.85724 4.91768 4.98206 5.05939 5.09932 5.18706 5.22886 5.26144 5.36507 5.45472 5.48497 5.89972 6.06969 6.12084 6.31148 6.54683 6.95138 7.07419 7.35852 7.50492 8.04238 8.67128 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019235 B = 0.002588 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.366772 B =10815.662591 C =11689.270580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.058 3.942 3 O -0.184 6.184 4 C -0.032 4.032 5 C -0.199 4.199 6 C -0.258 4.258 7 C 0.612 3.388 8 O -0.577 6.577 9 N -0.625 5.625 10 C 0.108 3.892 11 C -0.110 4.110 12 H 0.120 0.880 13 C -0.081 4.081 14 C 0.045 3.955 15 N -0.498 5.498 16 C 0.058 3.942 17 C 0.412 3.588 18 O -0.616 6.616 19 N -0.570 5.570 20 C -0.334 4.334 21 H 0.081 0.919 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.995 3.005 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.272 1.272 28 C 0.052 3.948 29 C 0.136 3.864 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.250 0.750 35 H 0.180 0.820 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.033 0.967 41 H 0.060 0.940 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.394 0.606 45 H 0.278 0.722 46 H 0.050 0.950 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.845 19.419 -10.745 27.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.005 3.995 3 O -0.080 6.080 4 C -0.097 4.097 5 C -0.218 4.218 6 C -0.262 4.262 7 C 0.404 3.596 8 O -0.459 6.459 9 N -0.359 5.359 10 C -0.014 4.014 11 C -0.129 4.129 12 H 0.138 0.862 13 C -0.119 4.119 14 C -0.083 4.083 15 N -0.220 5.220 16 C -0.074 4.074 17 C 0.199 3.801 18 O -0.504 6.504 19 N -0.207 5.207 20 C -0.463 4.463 21 H 0.099 0.901 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.077 4.077 29 C 0.032 3.968 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.266 0.734 35 H 0.197 0.803 36 H 0.133 0.867 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.118 0.882 43 H 0.107 0.893 44 H 0.227 0.773 45 H 0.088 0.912 46 H 0.069 0.931 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.388 19.783 -11.002 27.372 hybrid contribution -0.907 -1.916 0.646 2.216 sum 14.481 17.867 -10.356 25.222 Atomic orbital electron populations 1.20540 0.83503 1.04915 1.04515 1.22997 0.94721 0.83398 0.98411 1.83774 1.18191 1.34609 1.71441 1.24724 0.83413 0.96907 1.04664 1.23316 0.96199 0.95110 1.07135 1.21250 0.95282 0.92812 1.16900 1.16890 0.83910 0.83438 0.75334 1.90720 1.17792 1.84183 1.53160 1.49325 1.08507 1.05851 1.72193 1.23327 0.79644 0.96582 1.01811 1.22192 0.96169 0.99427 0.95151 0.86202 1.20726 0.96539 1.01165 0.93431 1.21339 0.90551 0.99574 0.96850 1.61030 1.01364 1.57543 1.02101 1.21974 0.95552 0.89294 1.00596 1.21990 0.83640 0.91865 0.82608 1.90382 1.38507 1.67719 1.53800 1.42153 1.25879 1.07905 1.44725 1.19648 1.12191 0.83907 1.30590 0.90118 1.26109 0.94668 1.04980 0.95670 1.69681 1.14753 1.38332 1.33400 0.84966 0.78159 0.76637 0.78433 1.19468 1.19509 1.19701 1.21995 0.98595 0.97972 0.89116 1.22501 0.94888 0.80399 0.98995 0.87404 0.89310 0.88372 0.89378 0.73417 0.80282 0.86736 0.88504 0.89432 0.91574 0.94838 0.92180 0.88170 0.89261 0.77269 0.91244 0.93125 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.66 9.89 71.23 0.70 -0.96 16 2 C 0.06 1.35 7.37 25.26 0.19 1.54 16 3 O -0.18 -3.56 10.52 4.43 0.05 -3.51 16 4 C -0.03 -0.43 12.03 66.89 0.80 0.38 16 5 C -0.20 -3.26 10.17 23.65 0.24 -3.02 16 6 C -0.26 -6.45 6.31 -19.00 -0.12 -6.57 16 7 C 0.61 18.75 7.98 86.65 0.69 19.44 16 8 O -0.58 -22.00 14.72 -4.09 -0.06 -22.06 16 9 N -0.62 -15.77 3.26 -878.94 -2.86 -18.63 16 10 C 0.11 1.60 6.64 80.92 0.54 2.14 16 11 C -0.11 -2.14 4.48 -11.63 -0.05 -2.19 16 12 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 13 C -0.08 -1.86 5.69 29.75 0.17 -1.69 16 14 C 0.05 1.51 4.89 86.45 0.42 1.94 16 15 N -0.50 -18.13 4.58 -912.99 -4.18 -22.30 16 16 C 0.06 2.32 5.79 85.56 0.50 2.81 16 17 C 0.41 20.21 7.19 87.65 0.63 20.84 16 18 O -0.62 -32.97 11.31 -3.09 -0.03 -33.01 16 19 N -0.57 -30.42 5.29 -306.98 -1.62 -32.05 16 20 C -0.33 -19.27 9.68 84.04 0.81 -18.46 16 21 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 23 N -0.92 -51.16 13.05 21.66 0.28 -50.88 16 24 Si 0.99 43.57 29.55 68.60 2.03 45.60 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 28 C 0.05 1.87 4.48 86.06 0.39 2.26 16 29 C 0.14 3.58 4.32 39.53 0.17 3.75 16 30 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.09 2.26 6.48 -2.39 -0.02 2.25 16 34 H 0.25 0.73 8.06 -2.91 -0.02 0.71 16 35 H 0.18 1.90 5.55 -2.91 -0.02 1.88 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.10 1.11 5.71 -2.39 -0.01 1.09 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 1.47 7.43 -2.39 -0.02 1.45 16 40 H 0.03 1.37 5.66 -2.39 -0.01 1.35 16 41 H 0.06 2.00 8.01 -2.38 -0.02 1.98 16 42 H 0.10 3.68 8.09 -2.39 -0.02 3.66 16 43 H 0.09 3.58 8.06 -2.39 -0.02 3.56 16 44 H 0.39 20.42 7.90 -92.71 -0.73 19.69 16 45 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 46 H 0.05 2.06 7.63 -2.39 -0.02 2.04 16 47 H 0.05 2.28 5.75 -2.39 -0.01 2.27 16 Total: -1.00 -77.11 374.66 0.44 -76.67 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: 0.29 Total: 38.29 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: 6.55 Total: 21.88 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -8.38 Total: -123.86 kcal Atomic # 8 Polarization: -58.53 SS G_CDS: -0.05 Total: -58.58 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -77.11 0.44 -76.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221252804.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.901 kcal (2) G-P(sol) polarization free energy of solvation -77.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds