Wall clock time and date at job start Wed Apr 1 2020 05:20:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 O 1.33657 * 125.79701 * 2 1
4 4 C 1.34215 * 110.90673 * 180.02562 * 3 2 1
5 5 C 1.34185 * 109.12231 * 359.70601 * 4 3 2
6 6 C 1.36408 * 125.80426 * 180.02562 * 2 1 3
7 7 C 1.47377 * 127.19426 * 359.97438 * 6 2 1
8 8 O 1.21620 * 119.99776 * 0.02562 * 7 6 2
9 9 N 1.34778 * 120.00356 * 180.02562 * 7 6 2
10 10 C 1.47220 * 136.44889 * 0.03107 * 9 7 6
11 11 C 1.52162 * 87.31006 * 150.82997 * 10 9 7
12 12 H 1.09009 * 113.51647 * 141.29134 * 11 10 9
13 13 C 1.51749 * 112.33945 * 272.08061 * 11 10 9
14 14 C 1.51677 * 113.41713 * 125.41031 * 13 11 10
15 15 N 1.43784 * 111.71205 * 313.28869 * 14 13 11
16 16 C 1.46900 * 111.12812 * 189.05809 * 15 14 13
17 17 C 1.50694 * 109.47023 * 299.49205 * 16 15 14
18 18 O 1.21298 * 120.00333 * 354.29106 * 17 16 15
19 19 N 1.34778 * 120.00214 * 174.28554 * 17 16 15
20 20 C 1.37100 * 120.00374 * 179.97438 * 19 17 16
21 21 H 1.07998 * 119.99897 * 0.02562 * 20 19 17
22 22 C 1.38951 * 119.99606 * 180.02562 * 20 19 17
23 23 N 1.31409 * 120.00602 * 0.02562 * 22 20 19
24 24 Si 1.86803 * 119.99324 * 180.02562 * 22 20 19
25 25 H 1.48498 * 109.47402 * 60.00328 * 24 22 20
26 26 H 1.48507 * 109.47003 * 180.02562 * 24 22 20
27 27 H 1.48499 * 109.47527 * 299.99924 * 24 22 20
28 28 C 1.46945 * 111.99516 * 64.28201 * 15 14 13
29 29 C 1.46595 * 136.44757 * 179.97438 * 9 7 6
30 30 H 1.09001 * 112.82456 * 95.36605 * 29 9 7
31 31 H 1.09003 * 109.47378 * 270.00439 * 1 2 3
32 32 H 1.08997 * 109.47302 * 30.00466 * 1 2 3
33 33 H 1.08999 * 109.46973 * 150.00319 * 1 2 3
34 34 H 1.07999 * 125.44321 * 180.02562 * 4 3 2
35 35 H 1.07998 * 127.01994 * 180.27378 * 5 4 3
36 36 H 1.08997 * 113.51844 * 266.40928 * 10 9 7
37 37 H 1.08999 * 113.51964 * 36.93966 * 10 9 7
38 38 H 1.09000 * 108.69354 * 246.42727 * 13 11 10
39 39 H 1.08998 * 108.69391 * 4.52167 * 13 11 10
40 40 H 1.08990 * 109.10722 * 73.12883 * 14 13 11
41 41 H 1.09007 * 109.09761 * 192.15822 * 14 13 11
42 42 H 1.09003 * 109.46769 * 59.48780 * 16 15 14
43 43 H 1.08997 * 109.47354 * 179.49118 * 16 15 14
44 44 H 0.97002 * 119.99622 * 0.02562 * 19 17 16
45 45 H 0.96996 * 119.99784 * 179.97438 * 23 22 20
46 46 H 1.08997 * 109.49456 * 176.93309 * 28 15 14
47 47 H 1.09000 * 109.49414 * 56.87236 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.2887 1.0841 0.0000
4 6 3.5858 0.7392 -0.0006
5 6 3.6849 -0.5990 0.0056
6 6 2.3050 -1.1063 -0.0005
7 6 1.8741 -2.5157 -0.0006
8 8 0.6890 -2.7892 -0.0007
9 7 2.7932 -3.5015 -0.0006
10 6 4.2627 -3.5901 0.0000
11 6 4.1111 -4.9109 0.7402
12 1 4.8254 -5.6712 0.4240
13 6 4.0436 -4.7245 2.2447
14 6 2.8159 -5.3534 2.8756
15 7 1.6190 -5.0304 2.1473
16 6 0.4208 -5.4608 2.8801
17 6 0.4631 -6.9540 3.0790
18 8 1.3442 -7.6098 2.5643
19 7 -0.4781 -7.5608 3.8290
20 6 -0.4400 -8.9194 4.0095
21 1 0.3444 -9.5032 3.5511
22 6 -1.4107 -9.5449 4.7822
23 7 -2.3655 -8.8346 5.3396
24 14 -1.3584 -11.3959 5.0288
25 1 -0.0803 -11.7720 5.6848
26 1 -2.4969 -11.8135 5.8860
27 1 -1.4568 -12.0738 3.7112
28 6 1.6340 -5.5891 0.7883
29 6 2.7789 -4.9673 -0.0002
30 1 2.8685 -5.3913 -1.0004
31 1 -0.3634 0.0001 1.0277
32 1 -0.3634 0.8899 -0.5139
33 1 -0.3633 -0.8900 -0.5138
34 1 4.4172 1.4286 -0.0003
35 1 4.5928 -1.1838 0.0109
36 1 4.6935 -3.6784 -0.9973
37 1 4.7447 -2.8192 0.6012
38 1 4.9327 -5.1689 2.6921
39 1 4.0391 -3.6570 2.4646
40 1 2.9333 -6.4370 2.8814
41 1 2.7222 -5.0004 3.9026
42 1 0.3913 -4.9657 3.8508
43 1 -0.4690 -5.1953 2.3095
44 1 -1.1829 -7.0365 4.2403
45 1 -3.0433 -9.2714 5.8787
46 1 0.6886 -5.3671 0.2933
47 1 1.7726 -6.6690 0.8404
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001221252804.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:20:17
Heat of formation + Delta-G solvation = -19.772027 kcal
Electronic energy + Delta-G solvation = -31474.640164 eV
Core-core repulsion = 27239.102910 eV
Total energy + Delta-G solvation = -4235.537254 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-43.48008 -42.25343 -40.46649 -39.00848 -37.32276 -35.77808 -33.99168 -33.39394
-33.06340 -32.71026 -30.80957 -29.84527 -27.73717 -27.35018 -25.73851 -25.08068
-23.77613 -22.86037 -21.95295 -21.18074 -20.45288 -19.94830 -19.14899 -18.41071
-17.73524 -17.47052 -17.17998 -17.06905 -16.67066 -16.52525 -16.31328 -15.84774
-15.63237 -15.47519 -15.17136 -14.89387 -14.50632 -14.40104 -14.20958 -13.98095
-13.82019 -13.73749 -13.55080 -13.49489 -13.14045 -13.11817 -13.01009 -12.63068
-12.48737 -12.47541 -12.20273 -12.14979 -11.99707 -11.61201 -11.31748 -11.18574
-10.91788 -10.74530 -10.62833 -10.03347 -9.64273 -9.35193 -8.89697 -8.47604
-5.99194 0.43158 1.21180 1.35824 1.38148 1.49625 1.80844 1.96989
2.09984 2.26570 2.49873 2.96790 3.16763 3.21893 3.35482 3.56527
3.69745 3.82922 3.96152 4.04560 4.19093 4.31845 4.34095 4.37788
4.44743 4.50152 4.52004 4.55479 4.58463 4.61661 4.62748 4.74935
4.77497 4.85724 4.91768 4.98206 5.05939 5.09932 5.18706 5.22886
5.26144 5.36507 5.45472 5.48497 5.89972 6.06969 6.12084 6.31148
6.54683 6.95138 7.07419 7.35852 7.50492 8.04238 8.67128
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.019235 B = 0.002588 C = 0.002395
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1455.366772 B =10815.662591 C =11689.270580
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C 0.058 3.942
3 O -0.184 6.184
4 C -0.032 4.032
5 C -0.199 4.199
6 C -0.258 4.258
7 C 0.612 3.388
8 O -0.577 6.577
9 N -0.625 5.625
10 C 0.108 3.892
11 C -0.110 4.110
12 H 0.120 0.880
13 C -0.081 4.081
14 C 0.045 3.955
15 N -0.498 5.498
16 C 0.058 3.942
17 C 0.412 3.588
18 O -0.616 6.616
19 N -0.570 5.570
20 C -0.334 4.334
21 H 0.081 0.919
22 C -0.014 4.014
23 N -0.921 5.921
24 Si 0.995 3.005
25 H -0.270 1.270
26 H -0.271 1.271
27 H -0.272 1.272
28 C 0.052 3.948
29 C 0.136 3.864
30 H 0.108 0.892
31 H 0.088 0.912
32 H 0.098 0.902
33 H 0.088 0.912
34 H 0.250 0.750
35 H 0.180 0.820
36 H 0.115 0.885
37 H 0.097 0.903
38 H 0.087 0.913
39 H 0.066 0.934
40 H 0.033 0.967
41 H 0.060 0.940
42 H 0.100 0.900
43 H 0.089 0.911
44 H 0.394 0.606
45 H 0.278 0.722
46 H 0.050 0.950
47 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.845 19.419 -10.745 27.269
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.005 3.995
3 O -0.080 6.080
4 C -0.097 4.097
5 C -0.218 4.218
6 C -0.262 4.262
7 C 0.404 3.596
8 O -0.459 6.459
9 N -0.359 5.359
10 C -0.014 4.014
11 C -0.129 4.129
12 H 0.138 0.862
13 C -0.119 4.119
14 C -0.083 4.083
15 N -0.220 5.220
16 C -0.074 4.074
17 C 0.199 3.801
18 O -0.504 6.504
19 N -0.207 5.207
20 C -0.463 4.463
21 H 0.099 0.901
22 C -0.214 4.214
23 N -0.562 5.562
24 Si 0.818 3.182
25 H -0.195 1.195
26 H -0.195 1.195
27 H -0.197 1.197
28 C -0.077 4.077
29 C 0.032 3.968
30 H 0.126 0.874
31 H 0.107 0.893
32 H 0.116 0.884
33 H 0.106 0.894
34 H 0.266 0.734
35 H 0.197 0.803
36 H 0.133 0.867
37 H 0.115 0.885
38 H 0.106 0.894
39 H 0.084 0.916
40 H 0.052 0.948
41 H 0.078 0.922
42 H 0.118 0.882
43 H 0.107 0.893
44 H 0.227 0.773
45 H 0.088 0.912
46 H 0.069 0.931
47 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 15.388 19.783 -11.002 27.372
hybrid contribution -0.907 -1.916 0.646 2.216
sum 14.481 17.867 -10.356 25.222
Atomic orbital electron populations
1.20540 0.83503 1.04915 1.04515 1.22997 0.94721 0.83398 0.98411
1.83774 1.18191 1.34609 1.71441 1.24724 0.83413 0.96907 1.04664
1.23316 0.96199 0.95110 1.07135 1.21250 0.95282 0.92812 1.16900
1.16890 0.83910 0.83438 0.75334 1.90720 1.17792 1.84183 1.53160
1.49325 1.08507 1.05851 1.72193 1.23327 0.79644 0.96582 1.01811
1.22192 0.96169 0.99427 0.95151 0.86202 1.20726 0.96539 1.01165
0.93431 1.21339 0.90551 0.99574 0.96850 1.61030 1.01364 1.57543
1.02101 1.21974 0.95552 0.89294 1.00596 1.21990 0.83640 0.91865
0.82608 1.90382 1.38507 1.67719 1.53800 1.42153 1.25879 1.07905
1.44725 1.19648 1.12191 0.83907 1.30590 0.90118 1.26109 0.94668
1.04980 0.95670 1.69681 1.14753 1.38332 1.33400 0.84966 0.78159
0.76637 0.78433 1.19468 1.19509 1.19701 1.21995 0.98595 0.97972
0.89116 1.22501 0.94888 0.80399 0.98995 0.87404 0.89310 0.88372
0.89378 0.73417 0.80282 0.86736 0.88504 0.89432 0.91574 0.94838
0.92180 0.88170 0.89261 0.77269 0.91244 0.93125 0.92792
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.66 9.89 71.23 0.70 -0.96 16
2 C 0.06 1.35 7.37 25.26 0.19 1.54 16
3 O -0.18 -3.56 10.52 4.43 0.05 -3.51 16
4 C -0.03 -0.43 12.03 66.89 0.80 0.38 16
5 C -0.20 -3.26 10.17 23.65 0.24 -3.02 16
6 C -0.26 -6.45 6.31 -19.00 -0.12 -6.57 16
7 C 0.61 18.75 7.98 86.65 0.69 19.44 16
8 O -0.58 -22.00 14.72 -4.09 -0.06 -22.06 16
9 N -0.62 -15.77 3.26 -878.94 -2.86 -18.63 16
10 C 0.11 1.60 6.64 80.92 0.54 2.14 16
11 C -0.11 -2.14 4.48 -11.63 -0.05 -2.19 16
12 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16
13 C -0.08 -1.86 5.69 29.75 0.17 -1.69 16
14 C 0.05 1.51 4.89 86.45 0.42 1.94 16
15 N -0.50 -18.13 4.58 -912.99 -4.18 -22.30 16
16 C 0.06 2.32 5.79 85.56 0.50 2.81 16
17 C 0.41 20.21 7.19 87.65 0.63 20.84 16
18 O -0.62 -32.97 11.31 -3.09 -0.03 -33.01 16
19 N -0.57 -30.42 5.29 -306.98 -1.62 -32.05 16
20 C -0.33 -19.27 9.68 84.04 0.81 -18.46 16
21 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16
22 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16
23 N -0.92 -51.16 13.05 21.66 0.28 -50.88 16
24 Si 0.99 43.57 29.55 68.60 2.03 45.60 16
25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16
26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16
27 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16
28 C 0.05 1.87 4.48 86.06 0.39 2.26 16
29 C 0.14 3.58 4.32 39.53 0.17 3.75 16
30 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16
31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16
32 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16
33 H 0.09 2.26 6.48 -2.39 -0.02 2.25 16
34 H 0.25 0.73 8.06 -2.91 -0.02 0.71 16
35 H 0.18 1.90 5.55 -2.91 -0.02 1.88 16
36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16
37 H 0.10 1.11 5.71 -2.39 -0.01 1.09 16
38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16
39 H 0.07 1.47 7.43 -2.39 -0.02 1.45 16
40 H 0.03 1.37 5.66 -2.39 -0.01 1.35 16
41 H 0.06 2.00 8.01 -2.38 -0.02 1.98 16
42 H 0.10 3.68 8.09 -2.39 -0.02 3.66 16
43 H 0.09 3.58 8.06 -2.39 -0.02 3.56 16
44 H 0.39 20.42 7.90 -92.71 -0.73 19.69 16
45 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16
46 H 0.05 2.06 7.63 -2.39 -0.02 2.04 16
47 H 0.05 2.28 5.75 -2.39 -0.01 2.27 16
Total: -1.00 -77.11 374.66 0.44 -76.67
By element:
Atomic # 1 Polarization: 38.00 SS G_CDS: 0.29 Total: 38.29 kcal
Atomic # 6 Polarization: 15.33 SS G_CDS: 6.55 Total: 21.88 kcal
Atomic # 7 Polarization: -115.48 SS G_CDS: -8.38 Total: -123.86 kcal
Atomic # 8 Polarization: -58.53 SS G_CDS: -0.05 Total: -58.58 kcal
Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal
Total: -77.11 0.44 -76.67 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001221252804.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.901 kcal
(2) G-P(sol) polarization free energy of solvation -77.109 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.208 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.436 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.673 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.772 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds