Wall clock time and date at job start Wed Apr 1 2020 04:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38224 * 119.62195 * 2 1 4 4 C 1.38630 * 119.16654 * 180.02562 * 3 2 1 5 5 C 1.38674 * 118.41624 * 359.75501 * 4 3 2 6 6 C 1.38186 * 119.16468 * 0.48339 * 5 4 3 7 7 C 1.50695 * 119.61637 * 179.77706 * 6 5 4 8 8 N 1.46501 * 109.46953 * 94.73017 * 7 6 5 9 9 C 1.46495 * 119.99916 * 90.00293 * 8 7 6 10 10 C 1.34779 * 119.99772 * 269.99551 * 8 7 6 11 11 O 1.21341 * 120.00286 * 5.30741 * 10 8 7 12 12 C 1.49453 * 119.99607 * 185.30357 * 10 8 7 13 13 O 1.21351 * 120.00000 * 6.03346 * 12 10 8 14 14 N 1.34772 * 119.99574 * 186.02771 * 12 10 8 15 15 C 1.47026 * 125.65246 * 359.69507 * 14 12 10 16 16 C 1.54333 * 107.26699 * 178.84689 * 15 14 12 17 17 C 1.55154 * 103.02088 * 338.14193 * 16 15 14 18 18 O 1.42899 * 111.00482 * 277.23295 * 17 16 15 19 19 C 1.50704 * 111.03776 * 153.39362 * 17 16 15 20 20 H 1.07997 * 119.99530 * 6.33634 * 19 17 16 21 21 C 1.37874 * 119.99866 * 186.33104 * 19 17 16 22 22 N 1.31511 * 120.00656 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 119.99649 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47229 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47355 * 119.99935 * 23 21 19 26 26 H 1.48501 * 109.46764 * 239.99910 * 23 21 19 27 27 C 1.47431 * 125.64548 * 179.97438 * 14 12 10 28 28 N 1.31859 * 119.61712 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47345 * 269.97680 * 1 2 3 30 30 H 1.08996 * 109.47567 * 29.97890 * 1 2 3 31 31 H 1.09003 * 109.46943 * 149.98316 * 1 2 3 32 32 H 1.08004 * 120.41467 * 0.02562 * 3 2 1 33 33 H 1.07993 * 120.79175 * 180.02562 * 4 3 2 34 34 H 1.08002 * 120.41330 * 180.24532 * 5 4 3 35 35 H 1.08999 * 109.47414 * 334.73080 * 7 6 5 36 36 H 1.09001 * 109.47108 * 214.72975 * 7 6 5 37 37 H 1.09002 * 109.47899 * 95.28055 * 9 8 7 38 38 H 1.09005 * 109.47104 * 335.27715 * 9 8 7 39 39 H 1.09002 * 109.46814 * 215.28371 * 9 8 7 40 40 H 1.08994 * 109.88081 * 298.39774 * 15 14 12 41 41 H 1.09002 * 109.87829 * 59.56263 * 15 14 12 42 42 H 1.09002 * 110.84894 * 219.67760 * 16 15 14 43 43 H 1.09001 * 110.51683 * 96.45068 * 16 15 14 44 44 H 0.96706 * 114.00145 * 173.65420 * 18 17 16 45 45 H 0.97001 * 120.00662 * 179.97438 * 22 21 19 46 46 H 1.08994 * 110.36970 * 322.93294 * 27 14 12 47 47 H 1.09002 * 110.36266 * 85.15214 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.2266 -0.0343 0.0042 6 6 3.4766 -1.1949 -0.0010 7 6 4.1727 -2.5314 -0.0011 8 7 4.2920 -3.0199 1.3749 9 6 3.2307 -3.8480 1.9529 10 6 5.3783 -2.7075 2.1090 11 8 6.2110 -1.9441 1.6660 12 6 5.5572 -3.3014 3.4688 13 8 4.7840 -4.1472 3.8680 14 7 6.5775 -2.8977 4.2514 15 6 7.5868 -1.8908 3.8921 16 6 8.5312 -1.7364 5.1029 17 6 7.6723 -2.2584 6.2849 18 8 6.7997 -1.2379 6.7739 19 6 8.5437 -2.7957 7.3909 20 1 9.6166 -2.6869 7.3341 21 6 7.9710 -3.4260 8.4752 22 7 6.6644 -3.5579 8.5447 23 14 9.0511 -4.0913 9.8464 24 1 10.4761 -3.8170 9.5314 25 1 8.6903 -3.4297 11.1260 26 1 8.8455 -5.5567 9.9716 27 6 6.8696 -3.3969 5.6075 28 7 2.1586 -1.1463 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8899 -0.5141 32 1 1.6507 2.1373 0.0004 33 1 4.1366 2.1138 -0.0001 34 1 5.3056 -0.0805 0.0079 35 1 5.1664 -2.4236 -0.4358 36 1 3.5936 -3.2426 -0.5902 37 1 3.4877 -4.9010 1.8375 38 1 2.2910 -3.6449 1.4391 39 1 3.1235 -3.6141 3.0121 40 1 8.1496 -2.2249 3.0205 41 1 7.1009 -0.9385 3.6795 42 1 8.8005 -0.6911 5.2541 43 1 9.4223 -2.3505 4.9731 44 1 6.1758 -1.5430 7.4468 45 1 6.2615 -4.0017 9.3074 46 1 5.9434 -3.5833 6.1509 47 1 7.4682 -4.3064 5.5562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261486828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:06 Heat of formation + Delta-G solvation = -65.275635 kcal Electronic energy + Delta-G solvation = -31131.920313 eV Core-core repulsion = 26894.409874 eV Total energy + Delta-G solvation = -4237.510438 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.80924 -40.14101 -38.48800 -37.23941 -35.89021 -34.19561 -33.26342 -32.63037 -32.26215 -30.22708 -29.08069 -27.90363 -27.04876 -26.73601 -25.43273 -23.58594 -22.65497 -22.18144 -21.11221 -19.68791 -18.85459 -17.23542 -17.02650 -16.83286 -16.60753 -16.32556 -15.99052 -15.50628 -15.25575 -15.15415 -14.67112 -14.47613 -14.31843 -14.04779 -13.39125 -13.33838 -13.12173 -12.92948 -12.83922 -12.75224 -12.59305 -12.45636 -12.35472 -12.23796 -11.99063 -11.87725 -11.67151 -11.47863 -11.07663 -10.97685 -10.68983 -10.57762 -10.47271 -10.21410 -10.00972 -9.71545 -9.38299 -9.17453 -8.88442 -8.80885 -8.69979 -8.40378 -7.88006 -6.30962 -4.40381 0.85882 1.11412 1.79364 2.59498 3.18377 3.27484 3.31019 3.54367 3.58552 3.85064 3.97593 4.24659 4.48245 4.53124 4.63297 4.87486 4.92281 4.96863 5.16744 5.23864 5.29690 5.34445 5.36250 5.45161 5.48328 5.51709 5.76475 5.78754 5.79986 5.82999 6.01431 6.03887 6.05032 6.08720 6.26907 6.36085 6.51167 6.53399 6.71971 6.80763 6.84898 7.10623 7.17903 7.29838 7.71095 7.78735 7.82663 7.99638 8.05662 8.46377 8.64202 9.26789 9.35274 10.76235 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018651 B = 0.002567 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.880619 B =10904.295151 C =11060.778918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.122 3.878 3 C -0.171 4.171 4 C -0.075 4.075 5 C -0.151 4.151 6 C 0.110 3.890 7 C 0.168 3.832 8 N -0.587 5.587 9 C 0.081 3.919 10 C 0.510 3.490 11 O -0.517 6.517 12 C 0.508 3.492 13 O -0.531 6.531 14 N -0.575 5.575 15 C 0.112 3.888 16 C -0.121 4.121 17 C 0.248 3.752 18 O -0.581 6.581 19 C -0.535 4.535 20 H 0.068 0.932 21 C 0.070 3.930 22 N -0.893 5.893 23 Si 0.904 3.096 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.093 3.907 28 N -0.473 5.473 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.381 0.619 45 H 0.270 0.730 46 H 0.090 0.910 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.643 5.510 -17.827 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.016 4.016 3 C -0.191 4.191 4 C -0.101 4.101 5 C -0.171 4.171 6 C -0.029 4.029 7 C 0.044 3.956 8 N -0.321 5.321 9 C -0.061 4.061 10 C 0.293 3.707 11 O -0.393 6.393 12 C 0.290 3.710 13 O -0.410 6.410 14 N -0.307 5.307 15 C -0.011 4.011 16 C -0.159 4.159 17 C 0.208 3.792 18 O -0.390 6.390 19 C -0.574 4.574 20 H 0.087 0.913 21 C -0.133 4.133 22 N -0.532 5.532 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.028 4.028 28 N -0.184 5.184 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.159 0.841 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.230 0.770 45 H 0.080 0.920 46 H 0.109 0.891 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.923 4.943 -18.199 20.863 hybrid contribution 0.609 0.097 1.193 1.344 sum -8.314 5.040 -17.005 19.589 Atomic orbital electron populations 1.20696 0.88808 1.03285 1.03157 1.21263 0.96956 0.88272 0.95113 1.21969 0.95037 0.99254 1.02830 1.21627 0.94447 0.98471 0.95538 1.22117 1.02119 0.92655 1.00205 1.21542 0.89508 0.95867 0.95969 1.20336 1.00991 0.91056 0.83180 1.47638 1.20259 1.51060 1.13102 1.22159 0.88731 0.94335 1.00833 1.20523 0.81788 0.81594 0.86753 1.90683 1.42676 1.33993 1.71907 1.19486 0.82124 0.83981 0.85394 1.90696 1.43192 1.32920 1.74164 1.48668 1.25523 1.38928 1.17543 1.22127 0.89710 0.91448 0.97766 1.22711 0.97528 1.02046 0.93652 1.19642 0.86339 0.83342 0.89908 1.86131 1.52660 1.39141 1.61048 1.21496 0.93839 1.37711 1.04333 0.91339 1.25090 0.95300 0.94630 0.98268 1.69714 1.09362 1.43027 1.31095 0.86337 0.80603 0.78539 0.81363 1.19558 1.20748 1.20779 1.23475 1.02103 0.99116 0.78110 1.67279 1.09310 1.29583 1.12219 0.90393 0.90848 0.90494 0.84921 0.84704 0.84065 0.88083 0.88335 0.91955 0.91195 0.88957 0.91543 0.91556 0.90578 0.90353 0.76961 0.92027 0.89131 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.17 36.00 0.37 -0.41 16 2 C 0.12 1.32 6.78 -82.59 -0.56 0.76 16 3 C -0.17 -1.66 9.74 -39.44 -0.38 -2.04 16 4 C -0.07 -0.77 10.18 -39.28 -0.40 -1.17 16 5 C -0.15 -1.80 9.71 -39.44 -0.38 -2.18 16 6 C 0.11 1.38 6.36 -82.59 -0.53 0.85 16 7 C 0.17 1.96 5.65 -5.20 -0.03 1.93 16 8 N -0.59 -8.46 2.86 -183.47 -0.52 -8.98 16 9 C 0.08 1.11 9.23 59.84 0.55 1.66 16 10 C 0.51 8.84 7.68 -11.58 -0.09 8.75 16 11 O -0.52 -9.12 13.50 5.50 0.07 -9.04 16 12 C 0.51 10.28 7.73 -11.59 -0.09 10.19 16 13 O -0.53 -11.42 13.64 5.50 0.07 -11.35 16 14 N -0.57 -12.19 3.33 -171.03 -0.57 -12.76 16 15 C 0.11 2.16 5.49 -3.06 -0.02 2.15 16 16 C -0.12 -2.47 6.13 -24.89 -0.15 -2.62 16 17 C 0.25 5.97 0.87 -89.63 -0.08 5.89 16 18 O -0.58 -14.75 13.16 -35.23 -0.46 -15.22 16 19 C -0.54 -13.75 8.27 -34.44 -0.28 -14.04 16 20 H 0.07 1.73 7.79 -52.49 -0.41 1.32 16 21 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 22 N -0.89 -23.41 10.69 55.43 0.59 -22.82 16 23 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 27 C 0.09 2.20 5.38 -2.54 -0.01 2.18 16 28 N -0.47 -5.94 10.19 -5.74 -0.06 -5.99 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.14 1.67 7.78 -52.49 -0.41 1.26 16 35 H 0.10 1.11 7.40 -51.93 -0.38 0.73 16 36 H 0.10 0.95 8.07 -51.93 -0.42 0.53 16 37 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 38 H 0.07 0.82 8.03 -51.93 -0.42 0.40 16 39 H 0.09 1.49 5.95 -51.93 -0.31 1.18 16 40 H 0.07 1.18 7.59 -51.93 -0.39 0.78 16 41 H 0.07 1.29 7.71 -51.93 -0.40 0.89 16 42 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 44 H 0.38 9.84 7.56 45.56 0.34 10.19 16 45 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 46 H 0.09 2.37 7.33 -51.93 -0.38 1.99 16 47 H 0.07 1.63 8.03 -51.93 -0.42 1.21 16 LS Contribution 389.19 15.07 5.86 5.86 Total: -1.00 -29.72 389.19 -8.31 -38.03 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -6.10 Total: 13.54 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: -2.18 Total: 13.62 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.56 Total: -50.55 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.31 Total: -35.61 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.72 -8.31 -38.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261486828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.247 kcal (2) G-P(sol) polarization free energy of solvation -29.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds