Wall clock time and date at job start Wed Apr 1 2020 04:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38224 * 119.62195 * 2 1 4 4 C 1.38630 * 119.16654 * 180.02562 * 3 2 1 5 5 C 1.38674 * 118.41624 * 359.75501 * 4 3 2 6 6 C 1.38186 * 119.16468 * 0.48339 * 5 4 3 7 7 C 1.50695 * 119.61637 * 179.77706 * 6 5 4 8 8 N 1.46501 * 109.46953 * 94.73017 * 7 6 5 9 9 C 1.46495 * 119.99916 * 90.00293 * 8 7 6 10 10 C 1.34779 * 119.99772 * 269.99551 * 8 7 6 11 11 O 1.21341 * 120.00286 * 5.30741 * 10 8 7 12 12 C 1.49453 * 119.99607 * 185.30357 * 10 8 7 13 13 O 1.21351 * 120.00000 * 6.03346 * 12 10 8 14 14 N 1.34772 * 119.99574 * 186.02771 * 12 10 8 15 15 C 1.47026 * 125.65246 * 359.69507 * 14 12 10 16 16 C 1.54333 * 107.26699 * 178.84689 * 15 14 12 17 17 C 1.55154 * 103.02088 * 338.14193 * 16 15 14 18 18 O 1.42899 * 111.00482 * 277.23295 * 17 16 15 19 19 C 1.50704 * 111.03776 * 153.39362 * 17 16 15 20 20 H 1.07997 * 119.99530 * 6.33634 * 19 17 16 21 21 C 1.37874 * 119.99866 * 186.33104 * 19 17 16 22 22 N 1.31511 * 120.00656 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 119.99649 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47229 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47355 * 119.99935 * 23 21 19 26 26 H 1.48501 * 109.46764 * 239.99910 * 23 21 19 27 27 C 1.47431 * 125.64548 * 179.97438 * 14 12 10 28 28 N 1.31859 * 119.61712 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47345 * 269.97680 * 1 2 3 30 30 H 1.08996 * 109.47567 * 29.97890 * 1 2 3 31 31 H 1.09003 * 109.46943 * 149.98316 * 1 2 3 32 32 H 1.08004 * 120.41467 * 0.02562 * 3 2 1 33 33 H 1.07993 * 120.79175 * 180.02562 * 4 3 2 34 34 H 1.08002 * 120.41330 * 180.24532 * 5 4 3 35 35 H 1.08999 * 109.47414 * 334.73080 * 7 6 5 36 36 H 1.09001 * 109.47108 * 214.72975 * 7 6 5 37 37 H 1.09002 * 109.47899 * 95.28055 * 9 8 7 38 38 H 1.09005 * 109.47104 * 335.27715 * 9 8 7 39 39 H 1.09002 * 109.46814 * 215.28371 * 9 8 7 40 40 H 1.08994 * 109.88081 * 298.39774 * 15 14 12 41 41 H 1.09002 * 109.87829 * 59.56263 * 15 14 12 42 42 H 1.09002 * 110.84894 * 219.67760 * 16 15 14 43 43 H 1.09001 * 110.51683 * 96.45068 * 16 15 14 44 44 H 0.96706 * 114.00145 * 173.65420 * 18 17 16 45 45 H 0.97001 * 120.00662 * 179.97438 * 22 21 19 46 46 H 1.08994 * 110.36970 * 322.93294 * 27 14 12 47 47 H 1.09002 * 110.36266 * 85.15214 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.2266 -0.0343 0.0042 6 6 3.4766 -1.1949 -0.0010 7 6 4.1727 -2.5314 -0.0011 8 7 4.2920 -3.0199 1.3749 9 6 3.2307 -3.8480 1.9529 10 6 5.3783 -2.7075 2.1090 11 8 6.2110 -1.9441 1.6660 12 6 5.5572 -3.3014 3.4688 13 8 4.7840 -4.1472 3.8680 14 7 6.5775 -2.8977 4.2514 15 6 7.5868 -1.8908 3.8921 16 6 8.5312 -1.7364 5.1029 17 6 7.6723 -2.2584 6.2849 18 8 6.7997 -1.2379 6.7739 19 6 8.5437 -2.7957 7.3909 20 1 9.6166 -2.6869 7.3341 21 6 7.9710 -3.4260 8.4752 22 7 6.6644 -3.5579 8.5447 23 14 9.0511 -4.0913 9.8464 24 1 10.4761 -3.8170 9.5314 25 1 8.6903 -3.4297 11.1260 26 1 8.8455 -5.5567 9.9716 27 6 6.8696 -3.3969 5.6075 28 7 2.1586 -1.1463 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8899 -0.5141 32 1 1.6507 2.1373 0.0004 33 1 4.1366 2.1138 -0.0001 34 1 5.3056 -0.0805 0.0079 35 1 5.1664 -2.4236 -0.4358 36 1 3.5936 -3.2426 -0.5902 37 1 3.4877 -4.9010 1.8375 38 1 2.2910 -3.6449 1.4391 39 1 3.1235 -3.6141 3.0121 40 1 8.1496 -2.2249 3.0205 41 1 7.1009 -0.9385 3.6795 42 1 8.8005 -0.6911 5.2541 43 1 9.4223 -2.3505 4.9731 44 1 6.1758 -1.5430 7.4468 45 1 6.2615 -4.0017 9.3074 46 1 5.9434 -3.5833 6.1509 47 1 7.4682 -4.3064 5.5562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261486828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:05 Heat of formation + Delta-G solvation = -85.332421 kcal Electronic energy + Delta-G solvation = -31132.790040 eV Core-core repulsion = 26894.409874 eV Total energy + Delta-G solvation = -4238.380166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.05760 -41.21020 -40.01569 -38.90416 -37.17030 -35.93568 -34.25050 -34.07733 -33.47561 -31.95438 -30.01687 -29.62072 -28.13660 -27.90353 -27.07231 -25.05631 -23.77157 -23.14620 -22.32133 -21.51769 -20.28988 -19.13331 -18.36810 -18.22255 -17.66949 -17.28131 -17.18228 -17.02281 -16.89987 -16.40886 -16.25383 -15.81024 -15.56261 -15.06868 -14.88790 -14.71417 -14.67729 -14.16050 -14.06466 -13.97530 -13.86952 -13.57681 -13.47223 -13.30725 -13.23788 -13.09430 -12.91658 -12.85525 -12.69113 -12.61520 -12.37148 -12.27606 -12.19694 -12.08813 -11.21640 -10.83205 -10.71901 -10.60486 -10.47263 -10.33431 -10.00682 -9.78269 -9.58252 -8.25823 -6.42536 0.01818 0.29711 0.33409 1.25816 1.42194 1.45659 1.56167 2.07071 2.30877 2.40612 2.83737 3.00151 3.11206 3.19751 3.69195 3.76291 3.85202 4.04820 4.08931 4.14504 4.17741 4.20937 4.31388 4.37799 4.41830 4.63751 4.64093 4.65917 4.69617 4.72874 4.78605 4.81043 4.92146 4.99360 5.05313 5.12766 5.18942 5.22978 5.24585 5.27208 5.32629 5.42784 5.73874 5.76744 5.85218 6.04230 6.29078 6.53541 6.66686 6.89439 6.99666 7.25431 7.34033 8.79943 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018651 B = 0.002567 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.880619 B =10904.295151 C =11060.778918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.106 3.894 3 C -0.169 4.169 4 C -0.081 4.081 5 C -0.167 4.167 6 C 0.091 3.909 7 C 0.168 3.832 8 N -0.576 5.576 9 C 0.087 3.913 10 C 0.513 3.487 11 O -0.522 6.522 12 C 0.499 3.501 13 O -0.550 6.550 14 N -0.584 5.584 15 C 0.121 3.879 16 C -0.115 4.115 17 C 0.233 3.767 18 O -0.588 6.588 19 C -0.553 4.553 20 H 0.070 0.930 21 C 0.028 3.972 22 N -0.914 5.914 23 Si 0.965 3.035 24 H -0.265 1.265 25 H -0.281 1.281 26 H -0.281 1.281 27 C 0.108 3.892 28 N -0.492 5.492 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.163 0.837 33 H 0.158 0.842 34 H 0.137 0.863 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.374 0.626 45 H 0.270 0.730 46 H 0.058 0.942 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.754 6.474 -19.275 22.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.032 4.032 3 C -0.189 4.189 4 C -0.106 4.106 5 C -0.187 4.187 6 C -0.047 4.047 7 C 0.046 3.954 8 N -0.309 5.309 9 C -0.055 4.055 10 C 0.296 3.704 11 O -0.398 6.398 12 C 0.283 3.717 13 O -0.430 6.430 14 N -0.316 5.316 15 C -0.001 4.001 16 C -0.153 4.153 17 C 0.193 3.807 18 O -0.395 6.395 19 C -0.591 4.591 20 H 0.088 0.912 21 C -0.174 4.174 22 N -0.553 5.553 23 Si 0.791 3.209 24 H -0.189 1.189 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.014 4.014 28 N -0.203 5.203 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.181 0.819 33 H 0.176 0.824 34 H 0.155 0.845 35 H 0.126 0.874 36 H 0.139 0.861 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.222 0.778 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.043 5.916 -19.691 22.461 hybrid contribution 0.532 -0.166 1.600 1.694 sum -8.512 5.750 -18.091 20.804 Atomic orbital electron populations 1.20765 0.86783 1.04484 1.03593 1.21861 0.98479 0.88312 0.94597 1.22344 0.94979 1.00190 1.01349 1.21977 0.95103 0.98802 0.94743 1.22221 1.02068 0.93412 1.01044 1.21596 0.89861 0.96115 0.97130 1.20556 1.01888 0.91611 0.81353 1.47686 1.19130 1.50216 1.13895 1.22101 0.89446 0.94552 0.99417 1.19920 0.82897 0.81911 0.85701 1.90675 1.43170 1.34308 1.71648 1.20165 0.81348 0.83655 0.86533 1.90684 1.43591 1.33696 1.74979 1.48706 1.26519 1.39522 1.16834 1.22136 0.89136 0.90963 0.97876 1.22721 0.97614 1.02720 0.92228 1.19863 0.86517 0.83510 0.90815 1.86123 1.52756 1.39798 1.60866 1.21774 0.94136 1.38054 1.05185 0.91211 1.25811 0.96377 0.94857 1.00315 1.69823 1.10590 1.43373 1.31545 0.85394 0.79270 0.77693 0.78591 1.18876 1.20672 1.20730 1.23034 1.00165 0.98769 0.79473 1.67287 1.09317 1.30734 1.12983 0.90189 0.88380 0.90635 0.81934 0.82446 0.84485 0.87419 0.86107 0.91256 0.89033 0.91695 0.89507 0.91646 0.89681 0.88923 0.77752 0.92069 0.92388 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 10.17 71.23 0.72 -0.56 16 2 C 0.11 2.08 6.78 42.55 0.29 2.37 16 3 C -0.17 -2.86 9.74 22.36 0.22 -2.64 16 4 C -0.08 -1.50 10.18 22.47 0.23 -1.27 16 5 C -0.17 -3.80 9.71 22.36 0.22 -3.58 16 6 C 0.09 2.18 6.36 42.54 0.27 2.45 16 7 C 0.17 3.69 5.65 85.63 0.48 4.18 16 8 N -0.58 -16.13 2.86 -852.73 -2.44 -18.57 16 9 C 0.09 2.31 9.23 127.77 1.18 3.49 16 10 C 0.51 17.55 7.68 87.27 0.67 18.22 16 11 O -0.52 -17.87 13.50 -3.22 -0.04 -17.91 16 12 C 0.50 20.46 7.73 87.27 0.67 21.14 16 13 O -0.55 -24.29 13.64 -3.25 -0.04 -24.34 16 14 N -0.58 -25.00 3.33 -813.37 -2.71 -27.70 16 15 C 0.12 4.55 5.49 86.73 0.48 5.03 16 16 C -0.12 -4.58 6.13 31.78 0.19 -4.38 16 17 C 0.23 11.33 0.87 -10.15 -0.01 11.33 16 18 O -0.59 -30.38 13.16 -148.98 -1.96 -32.34 16 19 C -0.55 -28.53 8.27 25.60 0.21 -28.32 16 20 H 0.07 3.50 7.79 -2.91 -0.02 3.47 16 21 C 0.03 1.42 5.29 84.65 0.45 1.87 16 22 N -0.91 -48.94 10.69 21.45 0.23 -48.71 16 23 Si 0.97 41.30 29.54 68.60 2.03 43.33 16 24 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 25 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 27 C 0.11 5.24 5.38 86.85 0.47 5.71 16 28 N -0.49 -11.67 10.19 -172.08 -1.75 -13.42 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 0.76 8.08 -2.39 -0.02 0.74 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.14 3.14 7.78 -2.91 -0.02 3.12 16 35 H 0.11 2.23 7.40 -2.39 -0.02 2.21 16 36 H 0.12 2.10 8.07 -2.39 -0.02 2.08 16 37 H 0.07 1.75 8.11 -2.39 -0.02 1.73 16 38 H 0.09 2.03 8.03 -2.38 -0.02 2.01 16 39 H 0.06 2.12 5.95 -2.39 -0.01 2.11 16 40 H 0.09 2.93 7.59 -2.39 -0.02 2.91 16 41 H 0.07 2.48 7.71 -2.39 -0.02 2.46 16 42 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 43 H 0.09 3.39 8.03 -2.39 -0.02 3.37 16 44 H 0.37 20.02 7.56 -74.05 -0.56 19.46 16 45 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 46 H 0.06 3.18 7.33 -2.39 -0.02 3.16 16 47 H 0.06 2.77 8.03 -2.39 -0.02 2.75 16 Total: -1.00 -64.34 389.19 0.50 -63.84 By element: Atomic # 1 Polarization: 40.37 SS G_CDS: 0.44 Total: 40.81 kcal Atomic # 6 Polarization: 28.27 SS G_CDS: 6.74 Total: 35.02 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -6.66 Total: -108.41 kcal Atomic # 8 Polarization: -72.54 SS G_CDS: -2.05 Total: -74.59 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -64.34 0.50 -63.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261486828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.491 kcal (2) G-P(sol) polarization free energy of solvation -64.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds