Wall clock time and date at job start Wed Apr 1 2020 05:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.80104 * 2 1 4 4 N 1.46497 * 109.47315 * 56.70587 * 3 2 1 5 5 C 1.36943 * 120.00195 * 180.02562 * 4 3 2 6 6 H 1.07996 * 119.99813 * 359.97438 * 5 4 3 7 7 C 1.38809 * 119.99847 * 180.02562 * 5 4 3 8 8 N 1.31617 * 119.99736 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00162 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.46667 * 90.00528 * 9 7 5 11 11 H 1.48502 * 109.47077 * 210.00091 * 9 7 5 12 12 H 1.48495 * 109.47341 * 330.00734 * 9 7 5 13 13 C 1.54614 * 110.74149 * 236.70536 * 2 1 3 14 14 C 1.54003 * 105.04882 * 263.51318 * 13 2 1 15 15 N 1.47485 * 107.07992 * 1.30440 * 14 13 2 16 16 C 1.34773 * 127.03247 * 154.51393 * 15 14 13 17 17 O 1.21558 * 120.00219 * 180.02562 * 16 15 14 18 18 C 1.47890 * 120.00333 * 0.02915 * 16 15 14 19 19 C 1.39276 * 119.61347 * 180.02562 * 18 16 15 20 20 C 1.38529 * 119.12949 * 180.02562 * 19 18 16 21 21 C 1.38925 * 118.53036 * 359.97438 * 20 19 18 22 22 C 1.39724 * 119.42816 * 359.89035 * 21 20 19 23 23 N 1.31981 * 120.37130 * 0.16829 * 22 21 20 24 24 O 1.35992 * 120.44169 * 180.22917 * 22 21 20 25 25 C 1.43139 * 116.70239 * 342.42508 * 24 22 21 26 26 C 1.53462 * 108.31918 * 46.59442 * 25 24 22 27 27 O 1.35780 * 119.57734 * 179.66559 * 21 20 19 28 28 C 1.48122 * 105.93527 * 334.78168 * 15 14 13 29 29 H 1.09005 * 109.47259 * 183.29373 * 1 2 3 30 30 H 1.09002 * 109.47235 * 303.29205 * 1 2 3 31 31 H 1.09005 * 109.47132 * 63.29244 * 1 2 3 32 32 H 1.08999 * 109.47424 * 176.71225 * 3 2 1 33 33 H 1.09005 * 109.47187 * 296.70911 * 3 2 1 34 34 H 0.97003 * 119.99910 * 359.97438 * 4 3 2 35 35 H 0.97005 * 120.00106 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.33028 * 144.62048 * 13 2 1 37 37 H 1.09007 * 110.40921 * 22.45257 * 13 2 1 38 38 H 1.08992 * 109.91465 * 241.94698 * 14 13 2 39 39 H 1.08998 * 109.91057 * 120.66004 * 14 13 2 40 40 H 1.08002 * 120.43560 * 0.08200 * 19 18 16 41 41 H 1.07997 * 120.73550 * 180.27130 * 20 19 18 42 42 H 1.08993 * 109.69961 * 166.30051 * 25 24 22 43 43 H 1.09005 * 109.69434 * 286.85252 * 25 24 22 44 44 H 1.09004 * 109.70985 * 59.80348 * 26 25 24 45 45 H 1.09000 * 109.71509 * 180.43409 * 26 25 24 46 46 H 1.08991 * 110.66262 * 157.50902 * 28 15 14 47 47 H 1.08997 * 110.65362 * 280.62547 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0733 1.4302 0.0000 4 7 1.5380 2.1560 1.1545 5 6 1.8873 3.4636 1.3633 6 1 2.5578 3.9596 0.6772 7 6 1.3804 4.1511 2.4575 8 7 1.7158 5.4079 2.6580 9 14 0.2213 3.2929 3.6447 10 1 1.0086 2.6500 4.7274 11 1 -0.7099 4.2883 4.2340 12 1 -0.5560 2.2581 2.9167 13 6 2.0776 -0.7937 -1.2086 14 6 2.3763 -2.2015 -0.6602 15 7 1.9871 -2.2038 0.7623 16 6 1.6220 -3.2695 1.5022 17 8 1.3241 -3.1241 2.6717 18 6 1.5839 -4.6158 0.8914 19 6 1.2049 -5.7113 1.6634 20 6 1.1732 -6.9679 1.0811 21 6 1.5221 -7.0877 -0.2582 22 6 1.8902 -5.9470 -0.9764 23 7 1.9101 -4.7657 -0.3882 24 8 2.2312 -6.0398 -2.2896 25 6 2.5683 -7.3431 -2.7761 26 6 1.5053 -8.3328 -2.2804 27 8 1.5050 -8.3103 -0.8486 28 6 2.0733 -0.7944 1.2098 29 1 -0.3634 -1.0260 0.0590 30 1 -0.3634 0.5641 0.8590 31 1 -0.3634 0.4619 -0.9181 32 1 3.1614 1.4056 0.0589 33 1 1.7706 1.9340 -0.9180 34 1 0.9355 1.7106 1.7706 35 1 1.3613 5.8885 3.4224 36 1 2.9910 -0.3315 -1.5828 37 1 1.3292 -0.8463 -1.9994 38 1 3.4402 -2.4185 -0.7544 39 1 1.7935 -2.9437 -1.2057 40 1 0.9383 -5.5827 2.7020 41 1 0.8790 -7.8346 1.6544 42 1 2.5836 -7.3358 -3.8659 43 1 3.5477 -7.6347 -2.3969 44 1 0.5247 -8.0362 -2.6528 45 1 1.7447 -9.3363 -2.6323 46 1 1.4489 -0.6309 2.0881 47 1 3.1076 -0.5188 1.4152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270752050.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:23 Heat of formation + Delta-G solvation = -29.644364 kcal Electronic energy + Delta-G solvation = -30894.377191 eV Core-core repulsion = 26658.411841 eV Total energy + Delta-G solvation = -4235.965351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.05041 -40.39063 -38.99747 -37.96842 -37.73289 -34.95741 -33.06858 -32.35738 -31.91881 -30.73100 -29.46566 -29.24275 -26.89737 -26.14304 -25.41011 -24.54215 -23.24523 -22.18141 -21.61469 -20.34129 -19.02038 -18.94943 -18.37089 -18.15514 -17.57699 -16.77604 -16.35844 -15.87604 -15.71006 -15.56996 -15.04186 -15.01446 -14.60144 -14.40765 -14.33909 -14.05049 -13.88673 -13.56599 -13.41944 -13.15804 -12.96488 -12.43178 -12.32932 -12.16251 -12.11480 -12.05171 -11.75513 -11.63645 -11.46275 -11.26206 -10.83047 -10.57540 -10.50211 -10.35856 -10.18902 -10.02410 -9.96741 -9.56008 -9.49900 -8.85290 -8.82927 -8.49898 -7.17197 -5.71632 -3.06649 0.22277 0.68830 2.05372 2.37806 2.56331 2.91026 3.41973 3.43918 3.47461 3.47786 3.51894 3.84257 4.02381 4.17361 4.27063 4.41976 4.56812 4.65121 4.69261 4.79600 4.82071 4.85243 4.86911 5.05404 5.19957 5.40919 5.45628 5.49728 5.59864 5.64771 5.75454 5.76124 5.88204 5.99519 6.00946 6.05301 6.10331 6.16291 6.25943 6.33293 6.50134 6.57974 6.58281 6.71064 6.77860 7.28625 7.56407 8.04580 8.08227 8.47471 9.26698 9.99348 10.19056 11.46790 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023036 B = 0.002446 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.196540 B =11443.419946 C =12308.839198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.084 4.084 3 C 0.174 3.826 4 N -0.755 5.755 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.935 5.935 9 Si 0.880 3.120 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.277 1.277 13 C -0.125 4.125 14 C 0.104 3.896 15 N -0.596 5.596 16 C 0.587 3.413 17 O -0.533 6.533 18 C 0.096 3.904 19 C -0.104 4.104 20 C -0.080 4.080 21 C 0.029 3.971 22 C 0.259 3.741 23 N -0.436 5.436 24 O -0.291 6.291 25 C 0.025 3.975 26 C 0.017 3.983 27 O -0.300 6.300 28 C 0.116 3.884 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.032 0.968 34 H 0.362 0.638 35 H 0.259 0.741 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.161 0.839 41 H 0.155 0.845 42 H 0.132 0.868 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.129 0.871 46 H 0.085 0.915 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.348 -33.201 -13.013 35.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.085 4.085 3 C 0.047 3.953 4 N -0.401 5.401 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.583 5.583 9 Si 0.711 3.289 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.203 1.203 13 C -0.164 4.164 14 C -0.019 4.019 15 N -0.327 5.327 16 C 0.374 3.626 17 O -0.410 6.410 18 C -0.042 4.042 19 C -0.125 4.125 20 C -0.106 4.106 21 C -0.019 4.019 22 C 0.077 3.923 23 N -0.159 5.159 24 O -0.200 6.200 25 C -0.051 4.051 26 C -0.058 4.058 27 O -0.212 6.212 28 C -0.006 4.006 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.195 0.805 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.120 0.880 40 H 0.179 0.821 41 H 0.173 0.827 42 H 0.150 0.850 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.147 0.853 46 H 0.103 0.897 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.531 -32.311 -12.930 34.806 hybrid contribution -0.963 -1.349 1.049 1.961 sum -0.432 -33.660 -11.881 35.697 Atomic orbital electron populations 1.21723 0.93676 1.00743 1.02642 1.21859 0.96466 0.96098 0.94098 1.20608 0.96061 0.87444 0.91231 1.42774 1.57122 1.11659 1.28574 1.19044 1.23646 0.86141 1.08317 0.89199 1.24651 1.00210 0.95795 0.98451 1.69701 1.48563 1.09085 1.30943 0.86614 0.81495 0.78824 0.81998 1.20933 1.21748 1.20290 1.22638 1.01929 0.94247 0.97569 1.22423 1.00702 0.98097 0.80690 1.48617 1.64207 1.07410 1.12496 1.17198 0.78035 0.82237 0.85160 1.90834 1.50091 1.84653 1.15435 1.20836 1.00379 0.94925 0.88079 1.21938 0.97887 0.90429 1.02289 1.20914 0.99069 0.98726 0.91851 1.19965 1.02060 0.85342 0.94557 1.19402 0.98076 0.89018 0.85845 1.66975 1.15221 1.22976 1.10688 1.86255 1.82861 1.31163 1.19769 1.23783 0.98421 0.80891 1.01973 1.23777 1.00393 1.02841 0.78824 1.86271 1.89190 1.24546 1.21242 1.22617 1.02039 0.77888 0.98051 0.93481 0.91936 0.92277 0.95140 0.94993 0.80492 0.93117 0.90240 0.90586 0.91716 0.88041 0.82138 0.82700 0.85026 0.89877 0.89836 0.85335 0.89673 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.31 37.16 0.31 -1.77 16 2 C -0.08 -1.31 0.65 -152.82 -0.10 -1.41 16 3 C 0.17 3.32 5.11 -4.04 -0.02 3.30 16 4 N -0.76 -18.02 4.96 -59.91 -0.30 -18.32 16 5 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 6 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 7 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 8 N -0.93 -29.81 13.97 55.49 0.78 -29.03 16 9 Si 0.88 22.83 27.74 -169.99 -4.71 18.11 16 10 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 12 H -0.28 -6.79 6.52 56.52 0.37 -6.42 16 13 C -0.13 -1.56 6.09 -25.36 -0.15 -1.71 16 14 C 0.10 1.31 6.06 -2.98 -0.02 1.29 16 15 N -0.60 -8.94 3.19 -171.08 -0.55 -9.49 16 16 C 0.59 9.17 7.87 -12.31 -0.10 9.07 16 17 O -0.53 -9.77 16.52 5.32 0.09 -9.68 16 18 C 0.10 1.23 6.72 -83.07 -0.56 0.67 16 19 C -0.10 -1.08 9.62 -39.09 -0.38 -1.46 16 20 C -0.08 -0.67 10.08 -39.22 -0.40 -1.07 16 21 C 0.03 0.27 6.51 -38.77 -0.25 0.02 16 22 C 0.26 2.74 7.55 -16.93 -0.13 2.61 16 23 N -0.44 -5.37 6.71 -9.70 -0.07 -5.43 16 24 O -0.29 -2.63 10.51 -32.33 -0.34 -2.97 16 25 C 0.03 0.11 7.24 37.40 0.27 0.38 16 26 C 0.02 0.06 7.26 37.40 0.27 0.33 16 27 O -0.30 -2.20 10.42 -31.67 -0.33 -2.53 16 28 C 0.12 1.91 5.65 -2.31 -0.01 1.89 16 29 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 30 H 0.06 1.14 6.69 -51.93 -0.35 0.79 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.03 0.58 8.10 -51.93 -0.42 0.16 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.36 8.58 4.07 -40.82 -0.17 8.42 16 35 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 36 H 0.08 0.91 7.85 -51.93 -0.41 0.50 16 37 H 0.08 0.86 7.87 -51.93 -0.41 0.45 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 1.28 5.86 -51.93 -0.30 0.97 16 40 H 0.16 1.53 7.63 -52.49 -0.40 1.13 16 41 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.13 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 45 H 0.13 0.07 8.14 -51.93 -0.42 -0.35 16 46 H 0.08 1.58 7.75 -51.93 -0.40 1.18 16 47 H 0.08 1.34 8.01 -51.93 -0.42 0.93 16 LS Contribution 378.75 15.07 5.71 5.71 Total: -1.00 -35.93 378.75 -7.90 -43.83 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.67 Total: 4.68 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -1.51 Total: 5.12 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.13 Total: -62.27 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.58 Total: -15.18 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.71 Total: 18.11 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.93 -7.90 -43.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270752050.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.184 kcal (2) G-P(sol) polarization free energy of solvation -35.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds