Wall clock time and date at job start Wed Apr 1 2020 05:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.80104 * 2 1 4 4 N 1.46497 * 109.47315 * 56.70587 * 3 2 1 5 5 C 1.36943 * 120.00195 * 180.02562 * 4 3 2 6 6 H 1.07996 * 119.99813 * 359.97438 * 5 4 3 7 7 C 1.38809 * 119.99847 * 180.02562 * 5 4 3 8 8 N 1.31617 * 119.99736 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00162 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.46667 * 90.00528 * 9 7 5 11 11 H 1.48502 * 109.47077 * 210.00091 * 9 7 5 12 12 H 1.48495 * 109.47341 * 330.00734 * 9 7 5 13 13 C 1.54614 * 110.74149 * 236.70536 * 2 1 3 14 14 C 1.54003 * 105.04882 * 263.51318 * 13 2 1 15 15 N 1.47485 * 107.07992 * 1.30440 * 14 13 2 16 16 C 1.34773 * 127.03247 * 154.51393 * 15 14 13 17 17 O 1.21558 * 120.00219 * 180.02562 * 16 15 14 18 18 C 1.47890 * 120.00333 * 0.02915 * 16 15 14 19 19 C 1.39276 * 119.61347 * 180.02562 * 18 16 15 20 20 C 1.38529 * 119.12949 * 180.02562 * 19 18 16 21 21 C 1.38925 * 118.53036 * 359.97438 * 20 19 18 22 22 C 1.39724 * 119.42816 * 359.89035 * 21 20 19 23 23 N 1.31981 * 120.37130 * 0.16829 * 22 21 20 24 24 O 1.35992 * 120.44169 * 180.22917 * 22 21 20 25 25 C 1.43139 * 116.70239 * 342.42508 * 24 22 21 26 26 C 1.53462 * 108.31918 * 46.59442 * 25 24 22 27 27 O 1.35780 * 119.57734 * 179.66559 * 21 20 19 28 28 C 1.48122 * 105.93527 * 334.78168 * 15 14 13 29 29 H 1.09005 * 109.47259 * 183.29373 * 1 2 3 30 30 H 1.09002 * 109.47235 * 303.29205 * 1 2 3 31 31 H 1.09005 * 109.47132 * 63.29244 * 1 2 3 32 32 H 1.08999 * 109.47424 * 176.71225 * 3 2 1 33 33 H 1.09005 * 109.47187 * 296.70911 * 3 2 1 34 34 H 0.97003 * 119.99910 * 359.97438 * 4 3 2 35 35 H 0.97005 * 120.00106 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.33028 * 144.62048 * 13 2 1 37 37 H 1.09007 * 110.40921 * 22.45257 * 13 2 1 38 38 H 1.08992 * 109.91465 * 241.94698 * 14 13 2 39 39 H 1.08998 * 109.91057 * 120.66004 * 14 13 2 40 40 H 1.08002 * 120.43560 * 0.08200 * 19 18 16 41 41 H 1.07997 * 120.73550 * 180.27130 * 20 19 18 42 42 H 1.08993 * 109.69961 * 166.30051 * 25 24 22 43 43 H 1.09005 * 109.69434 * 286.85252 * 25 24 22 44 44 H 1.09004 * 109.70985 * 59.80348 * 26 25 24 45 45 H 1.09000 * 109.71509 * 180.43409 * 26 25 24 46 46 H 1.08991 * 110.66262 * 157.50902 * 28 15 14 47 47 H 1.08997 * 110.65362 * 280.62547 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0733 1.4302 0.0000 4 7 1.5380 2.1560 1.1545 5 6 1.8873 3.4636 1.3633 6 1 2.5578 3.9596 0.6772 7 6 1.3804 4.1511 2.4575 8 7 1.7158 5.4079 2.6580 9 14 0.2213 3.2929 3.6447 10 1 1.0086 2.6500 4.7274 11 1 -0.7099 4.2883 4.2340 12 1 -0.5560 2.2581 2.9167 13 6 2.0776 -0.7937 -1.2086 14 6 2.3763 -2.2015 -0.6602 15 7 1.9871 -2.2038 0.7623 16 6 1.6220 -3.2695 1.5022 17 8 1.3241 -3.1241 2.6717 18 6 1.5839 -4.6158 0.8914 19 6 1.2049 -5.7113 1.6634 20 6 1.1732 -6.9679 1.0811 21 6 1.5221 -7.0877 -0.2582 22 6 1.8902 -5.9470 -0.9764 23 7 1.9101 -4.7657 -0.3882 24 8 2.2312 -6.0398 -2.2896 25 6 2.5683 -7.3431 -2.7761 26 6 1.5053 -8.3328 -2.2804 27 8 1.5050 -8.3103 -0.8486 28 6 2.0733 -0.7944 1.2098 29 1 -0.3634 -1.0260 0.0590 30 1 -0.3634 0.5641 0.8590 31 1 -0.3634 0.4619 -0.9181 32 1 3.1614 1.4056 0.0589 33 1 1.7706 1.9340 -0.9180 34 1 0.9355 1.7106 1.7706 35 1 1.3613 5.8885 3.4224 36 1 2.9910 -0.3315 -1.5828 37 1 1.3292 -0.8463 -1.9994 38 1 3.4402 -2.4185 -0.7544 39 1 1.7935 -2.9437 -1.2057 40 1 0.9383 -5.5827 2.7020 41 1 0.8790 -7.8346 1.6544 42 1 2.5836 -7.3358 -3.8659 43 1 3.5477 -7.6347 -2.3969 44 1 0.5247 -8.0362 -2.6528 45 1 1.7447 -9.3363 -2.6323 46 1 1.4489 -0.6309 2.0881 47 1 3.1076 -0.5188 1.4152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270752050.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:22 Heat of formation + Delta-G solvation = -55.684036 kcal Electronic energy + Delta-G solvation = -30895.506356 eV Core-core repulsion = 26658.411841 eV Total energy + Delta-G solvation = -4237.094516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.69395 -41.44829 -39.93687 -38.89610 -38.50376 -36.65050 -34.49239 -33.44642 -32.70060 -32.35530 -30.49102 -30.07652 -28.11229 -27.61782 -26.14851 -25.52538 -24.60343 -23.25102 -22.79781 -21.23204 -20.43661 -19.83966 -19.43568 -19.06966 -18.68409 -17.78470 -17.25519 -16.94492 -16.70130 -16.52710 -16.12143 -15.84332 -15.69019 -15.56062 -15.51686 -15.15315 -14.85713 -14.84391 -14.62525 -14.40433 -14.05828 -13.88597 -13.67385 -13.52913 -13.28841 -13.02773 -12.85486 -12.74337 -12.65937 -12.36522 -12.19983 -12.15395 -11.92774 -11.72116 -11.64810 -11.50896 -11.37502 -10.98829 -10.70542 -10.39039 -9.81806 -9.41792 -9.27224 -8.02569 -5.34034 -0.58907 -0.01993 1.35709 1.38221 1.40378 1.43766 1.56777 1.80033 1.96083 2.46622 2.58776 2.87302 3.10681 3.29370 3.44866 3.47201 3.63403 3.73090 3.79634 3.88357 3.91888 3.98743 4.01609 4.16107 4.31398 4.33360 4.37139 4.53133 4.54771 4.59706 4.60878 4.72131 4.76394 4.81420 4.92914 5.02253 5.06626 5.06746 5.07794 5.13570 5.29639 5.30142 5.46849 5.49600 5.77640 5.97913 6.22042 6.38656 6.54440 6.94498 7.08554 7.85829 8.03172 9.19040 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023036 B = 0.002446 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.196540 B =11443.419946 C =12308.839198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 C 0.172 3.828 4 N -0.758 5.758 5 C -0.225 4.225 6 H 0.064 0.936 7 C -0.060 4.060 8 N -0.982 5.982 9 Si 0.942 3.058 10 H -0.283 1.283 11 H -0.293 1.293 12 H -0.257 1.257 13 C -0.115 4.115 14 C 0.110 3.890 15 N -0.597 5.597 16 C 0.582 3.418 17 O -0.572 6.572 18 C 0.070 3.930 19 C -0.102 4.102 20 C -0.075 4.075 21 C 0.040 3.960 22 C 0.250 3.750 23 N -0.451 5.451 24 O -0.309 6.309 25 C 0.018 3.982 26 C 0.012 3.988 27 O -0.304 6.304 28 C 0.115 3.885 29 H 0.054 0.946 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.038 0.962 34 H 0.363 0.637 35 H 0.257 0.743 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.163 0.837 41 H 0.186 0.814 42 H 0.164 0.836 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.165 0.835 46 H 0.059 0.941 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.097 -37.061 -15.061 40.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.077 4.077 3 C 0.046 3.954 4 N -0.404 5.404 5 C -0.356 4.356 6 H 0.082 0.918 7 C -0.252 4.252 8 N -0.633 5.633 9 Si 0.770 3.230 10 H -0.209 1.209 11 H -0.219 1.219 12 H -0.182 1.182 13 C -0.153 4.153 14 C -0.012 4.012 15 N -0.328 5.328 16 C 0.370 3.630 17 O -0.452 6.452 18 C -0.066 4.066 19 C -0.123 4.123 20 C -0.100 4.100 21 C -0.010 4.010 22 C 0.067 3.933 23 N -0.175 5.175 24 O -0.219 6.219 25 C -0.057 4.057 26 C -0.063 4.063 27 O -0.217 6.217 28 C -0.007 4.007 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.197 0.803 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.181 0.819 41 H 0.203 0.797 42 H 0.182 0.818 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.183 0.817 46 H 0.077 0.923 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.095 -36.233 -15.046 39.233 hybrid contribution -0.729 -0.310 1.484 1.682 sum -0.634 -36.543 -13.562 38.984 Atomic orbital electron populations 1.21672 0.93651 1.00880 1.02087 1.21719 0.96343 0.94137 0.95508 1.20783 0.96149 0.89031 0.89480 1.42822 1.57195 1.10299 1.30087 1.19059 1.21794 0.87754 1.07021 0.91847 1.25369 1.02641 0.96523 1.00660 1.69857 1.50632 1.10854 1.31929 0.85604 0.79562 0.78035 0.79769 1.20923 1.21947 1.18218 1.22636 1.02991 0.93287 0.96381 1.22495 1.01222 0.98250 0.79239 1.48679 1.64081 1.06606 1.13405 1.17691 0.77110 0.83329 0.84825 1.90793 1.51882 1.85476 1.17076 1.20440 1.03346 0.93885 0.88959 1.22016 0.97356 0.90649 1.02294 1.21197 0.98112 0.98764 0.91917 1.20053 1.00520 0.85679 0.94704 1.19550 0.98211 0.88917 0.86621 1.66782 1.15882 1.24338 1.10493 1.86239 1.82788 1.34049 1.18793 1.24193 0.98666 0.79097 1.03760 1.24158 1.00600 1.04801 0.76698 1.86278 1.88610 1.23336 1.23454 1.22471 1.01248 0.79435 0.97574 0.92729 0.94517 0.90948 0.94802 0.94416 0.80318 0.93405 0.88781 0.88678 0.90962 0.87552 0.81898 0.79717 0.81830 0.89404 0.89362 0.81715 0.92256 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 8.31 71.98 0.60 -3.26 16 2 C -0.08 -2.29 0.65 -51.09 -0.03 -2.33 16 3 C 0.17 6.41 5.11 86.38 0.44 6.86 16 4 N -0.76 -36.16 4.96 -343.46 -1.70 -37.86 16 5 C -0.23 -13.05 10.47 84.03 0.88 -12.17 16 6 H 0.06 3.96 8.06 -2.91 -0.02 3.94 16 7 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 8 N -0.98 -64.21 13.97 21.65 0.30 -63.91 16 9 Si 0.94 47.94 27.74 68.60 1.90 49.84 16 10 H -0.28 -14.30 7.11 99.48 0.71 -13.59 16 11 H -0.29 -14.91 7.11 99.48 0.71 -14.21 16 12 H -0.26 -12.10 6.52 99.48 0.65 -11.46 16 13 C -0.11 -2.58 6.09 31.48 0.19 -2.39 16 14 C 0.11 2.60 6.06 86.53 0.52 3.12 16 15 N -0.60 -17.80 3.19 -813.44 -2.60 -20.40 16 16 C 0.58 18.44 7.87 86.80 0.68 19.13 16 17 O -0.57 -21.69 16.52 -3.90 -0.06 -21.75 16 18 C 0.07 1.78 6.72 41.79 0.28 2.06 16 19 C -0.10 -2.03 9.62 22.59 0.22 -1.81 16 20 C -0.07 -1.10 10.08 22.50 0.23 -0.87 16 21 C 0.04 0.63 6.51 22.79 0.15 0.78 16 22 C 0.25 4.86 7.55 85.03 0.64 5.50 16 23 N -0.45 -10.66 6.71 -297.44 -2.00 -12.66 16 24 O -0.31 -4.87 10.51 -81.40 -0.86 -5.73 16 25 C 0.02 0.09 7.24 72.14 0.52 0.61 16 26 C 0.01 0.04 7.26 72.14 0.52 0.57 16 27 O -0.30 -3.47 10.42 -79.03 -0.82 -4.30 16 28 C 0.12 3.82 5.65 86.61 0.49 4.31 16 29 H 0.05 1.58 8.07 -2.38 -0.02 1.56 16 30 H 0.04 1.30 6.69 -2.39 -0.02 1.29 16 31 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.03 1.27 8.10 -2.39 -0.02 1.25 16 33 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.36 17.16 4.07 -92.71 -0.38 16.79 16 35 H 0.26 16.07 8.31 -92.70 -0.77 15.30 16 36 H 0.09 1.89 7.85 -2.39 -0.02 1.87 16 37 H 0.09 1.83 7.87 -2.38 -0.02 1.82 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.11 2.49 5.86 -2.39 -0.01 2.48 16 40 H 0.16 3.07 7.63 -2.91 -0.02 3.05 16 41 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.16 -0.29 8.14 -2.39 -0.02 -0.31 16 43 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 44 H 0.09 0.29 8.14 -2.38 -0.02 0.27 16 45 H 0.17 -0.60 8.14 -2.39 -0.02 -0.62 16 46 H 0.06 2.26 7.75 -2.39 -0.02 2.24 16 47 H 0.08 2.57 8.01 -2.39 -0.02 2.55 16 Total: -1.00 -80.36 378.75 1.53 -78.83 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.57 Total: 21.03 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 6.80 Total: 16.91 kcal Atomic # 7 Polarization: -128.84 SS G_CDS: -5.99 Total: -134.83 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -1.74 Total: -31.77 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.90 Total: 49.84 kcal Total: -80.36 1.53 -78.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270752050.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.144 kcal (2) G-P(sol) polarization free energy of solvation -80.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds