Wall clock time and date at job start Wed Apr 1 2020 05:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 110.29285 * 2 1 4 4 C 1.34783 * 119.99586 * 59.29558 * 3 2 1 5 5 O 1.21586 * 120.00370 * 0.02562 * 4 3 2 6 6 C 1.47536 * 119.99770 * 180.02562 * 4 3 2 7 7 C 1.39707 * 120.19078 * 0.02562 * 6 4 3 8 8 C 1.37791 * 119.90982 * 179.97438 * 7 6 4 9 9 C 1.38554 * 120.29845 * 359.97438 * 8 7 6 10 10 C 1.38060 * 120.38911 * 359.72074 * 9 8 7 11 11 C 1.38712 * 120.07927 * 0.56099 * 10 9 8 12 12 O 1.35655 * 120.14688 * 179.71584 * 11 10 9 13 13 C 1.54261 * 110.32394 * 122.12838 * 2 1 3 14 14 C 1.54610 * 104.95055 * 119.02140 * 13 2 1 15 15 N 1.48558 * 104.63628 * 23.78164 * 14 13 2 16 16 C 1.46896 * 111.00237 * 200.99874 * 15 14 13 17 17 C 1.50698 * 109.46845 * 285.41572 * 16 15 14 18 18 O 1.21296 * 120.00292 * 0.02562 * 17 16 15 19 19 N 1.34783 * 119.99963 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00014 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00384 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00011 * 180.02562 * 20 19 17 23 23 N 1.31416 * 120.00178 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99992 * 180.02562 * 22 20 19 25 25 H 1.48490 * 109.47334 * 89.99763 * 24 22 20 26 26 H 1.48501 * 109.46983 * 209.99823 * 24 22 20 27 27 H 1.48503 * 109.47062 * 329.99614 * 24 22 20 28 28 C 1.48565 * 104.22112 * 320.55559 * 15 14 13 29 29 H 1.09008 * 109.46693 * 60.69554 * 1 2 3 30 30 H 1.08993 * 109.47625 * 180.69729 * 1 2 3 31 31 H 1.08995 * 109.47229 * 300.70536 * 1 2 3 32 32 H 0.96995 * 120.00509 * 239.30089 * 3 2 1 33 33 H 1.07994 * 120.04923 * 0.02562 * 7 6 4 34 34 H 1.07996 * 119.85699 * 180.02562 * 8 7 6 35 35 H 1.07997 * 119.80699 * 179.97438 * 9 8 7 36 36 H 1.07996 * 119.96081 * 180.27298 * 10 9 8 37 37 H 0.96700 * 114.00230 * 269.72528 * 12 11 10 38 38 H 1.08999 * 110.32543 * 237.89449 * 13 2 1 39 39 H 1.09001 * 110.32044 * 0.09996 * 13 2 1 40 40 H 1.08998 * 110.36175 * 265.00524 * 14 13 2 41 41 H 1.09001 * 110.52344 * 142.64073 * 14 13 2 42 42 H 1.08993 * 109.47455 * 45.41757 * 16 15 14 43 43 H 1.09003 * 109.47012 * 165.41902 * 16 15 14 44 44 H 0.97003 * 119.99829 * 0.02562 * 19 17 16 45 45 H 0.96993 * 119.99784 * 180.02562 * 23 22 20 46 46 H 1.08999 * 110.41102 * 280.70290 * 28 15 14 47 47 H 1.08994 * 110.41190 * 158.26311 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0381 1.3741 0.0000 4 6 1.7127 2.2128 1.0037 5 8 0.9980 1.8289 1.9093 6 6 2.2239 3.5968 1.0034 7 6 3.0450 4.0422 -0.0354 8 6 3.5188 5.3361 -0.0301 9 6 3.1842 6.1988 1.0012 10 6 2.3685 5.7735 2.0307 11 6 1.8874 4.4725 2.0443 12 8 1.0906 4.0514 3.0582 13 6 2.0658 -0.7693 1.2250 14 6 2.8839 -1.9405 0.6340 15 7 3.2708 -1.4803 -0.7245 16 6 3.6090 -2.6183 -1.5895 17 6 4.9598 -3.1612 -1.2000 18 8 5.5795 -2.6507 -0.2909 19 7 5.4788 -4.2149 -1.8612 20 6 6.7078 -4.7085 -1.5072 21 1 7.2601 -4.2533 -0.6983 22 6 7.2431 -5.7943 -2.1891 23 7 6.5715 -6.3478 -3.1738 24 14 8.9175 -6.4673 -1.7063 25 1 8.7489 -7.5177 -0.6704 26 1 9.5793 -7.0515 -2.9005 27 1 9.7555 -5.3676 -1.1644 28 6 2.0662 -0.7699 -1.2260 29 1 -0.3633 0.5030 -0.8962 30 1 -0.3634 -1.0275 0.0125 31 1 -0.3633 0.5247 0.8835 32 1 2.6085 1.6803 -0.7222 33 1 3.3075 3.3737 -0.8419 34 1 4.1531 5.6797 -0.8338 35 1 3.5603 7.2112 0.9976 36 1 2.1085 6.4530 2.8287 37 1 1.5722 3.6666 3.8032 38 1 2.7067 -0.1246 1.8264 39 1 1.2387 -1.1484 1.8254 40 1 2.2692 -2.8384 0.5704 41 1 3.7711 -2.1302 1.2382 42 1 2.8568 -3.3986 -1.4741 43 1 3.6353 -2.2898 -2.6285 44 1 4.9830 -4.6234 -2.5880 45 1 6.9451 -7.1061 -3.6495 46 1 1.3236 -1.4846 -1.5807 47 1 2.3378 -0.0762 -2.0216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278355531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:28 Heat of formation + Delta-G solvation = -69.975476 kcal Electronic energy + Delta-G solvation = -30272.720445 eV Core-core repulsion = 26035.006206 eV Total energy + Delta-G solvation = -4237.714239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.86498 -39.68866 -38.42711 -37.42261 -36.92604 -34.56967 -33.79413 -32.42507 -31.24579 -30.66935 -30.06773 -29.41523 -27.61380 -25.41208 -24.36382 -23.77901 -22.83354 -21.48182 -21.06396 -19.59248 -19.06441 -18.73392 -17.85867 -17.74031 -16.57608 -16.05577 -15.94400 -15.66136 -15.42443 -15.10915 -14.83453 -14.58952 -14.48034 -14.22439 -14.02782 -13.74352 -13.70540 -13.19751 -12.99407 -12.73961 -12.50332 -12.45329 -12.28564 -12.08581 -11.99377 -11.91434 -11.53610 -11.45356 -11.11559 -11.01782 -10.94088 -10.88856 -10.63919 -10.39184 -10.21460 -9.68144 -9.48999 -9.41384 -9.12432 -8.96707 -8.52808 -8.03489 -7.94465 -6.41217 -3.81871 0.50067 0.89689 2.70478 3.01910 3.17821 3.26361 3.32236 3.46479 3.91170 3.93662 4.00413 4.25354 4.32898 4.44522 4.52855 4.64125 4.77797 4.95504 4.98835 5.00840 5.11951 5.25212 5.35247 5.36062 5.41060 5.47378 5.52523 5.57405 5.68188 5.75294 5.79921 5.80904 5.83886 5.94251 6.00450 6.03564 6.17053 6.24883 6.28806 6.35468 6.41636 6.55338 7.06854 7.16253 7.43850 7.47148 7.55619 8.06839 8.17951 8.62801 9.19074 9.55377 10.07604 10.76665 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016790 B = 0.002139 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.226735 B =13085.418558 C =13898.589120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.175 3.825 3 N -0.709 5.709 4 C 0.559 3.441 5 O -0.520 6.520 6 C -0.164 4.164 7 C -0.069 4.069 8 C -0.138 4.138 9 C -0.080 4.080 10 C -0.159 4.159 11 C 0.167 3.833 12 O -0.479 6.479 13 C -0.118 4.118 14 C 0.037 3.963 15 N -0.482 5.482 16 C 0.033 3.967 17 C 0.446 3.554 18 O -0.576 6.576 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.027 3.973 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.399 0.601 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.396 0.604 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.040 0.960 41 H 0.097 0.903 42 H 0.052 0.948 43 H 0.088 0.912 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.059 0.941 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.790 21.022 4.214 24.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.089 3.911 3 N -0.362 5.362 4 C 0.346 3.654 5 O -0.397 6.397 6 C -0.168 4.168 7 C -0.088 4.088 8 C -0.156 4.156 9 C -0.098 4.098 10 C -0.178 4.178 11 C 0.121 3.879 12 O -0.290 6.290 13 C -0.157 4.157 14 C -0.091 4.091 15 N -0.206 5.206 16 C -0.098 4.098 17 C 0.231 3.769 18 O -0.459 6.459 19 N -0.204 5.204 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.101 4.101 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.236 0.764 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.254 0.746 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.115 0.885 42 H 0.070 0.930 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.803 21.425 5.006 24.968 hybrid contribution 0.564 -1.280 -0.577 1.513 sum -11.239 20.145 4.429 23.489 Atomic orbital electron populations 1.22211 0.93559 1.02512 1.03391 1.20996 0.93565 0.80812 0.95700 1.46034 1.52250 1.11876 1.26017 1.17977 0.80590 0.84513 0.82278 1.90766 1.36470 1.76980 1.35468 1.20495 1.02887 0.94809 0.98607 1.21314 0.94467 0.96256 0.96771 1.21137 1.01362 0.93655 0.99461 1.21240 0.95691 0.99837 0.93038 1.21466 0.99483 0.95926 1.00901 1.18498 0.89309 0.91107 0.89019 1.84731 1.33632 1.81407 1.29217 1.22713 0.99469 0.96872 0.96605 1.23239 0.99505 0.95371 0.91019 1.65148 1.30523 1.22978 1.01924 1.22069 0.97213 0.92636 0.97913 1.19685 0.87781 0.83301 0.86127 1.90516 1.62376 1.60876 1.32174 1.41864 1.18558 1.27744 1.32197 1.19682 0.94275 1.11925 1.16781 0.87975 1.25253 0.99904 0.96863 0.95994 1.69611 1.38884 1.23991 1.21964 0.85867 0.81574 0.79076 0.77829 1.20450 1.20945 1.19432 1.23437 0.92609 0.97844 0.96230 0.92657 0.91708 0.90003 0.76446 0.85074 0.85057 0.85183 0.84821 0.74602 0.90656 0.90682 0.94212 0.88517 0.93026 0.89345 0.77546 0.91919 0.92311 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 8.15 37.16 0.30 -1.45 16 2 C 0.18 2.11 1.01 -130.44 -0.13 1.97 16 3 N -0.71 -8.01 5.04 -47.35 -0.24 -8.25 16 4 C 0.56 7.05 6.94 -12.47 -0.09 6.97 16 5 O -0.52 -7.82 12.44 -16.59 -0.21 -8.03 16 6 C -0.16 -1.78 5.89 -104.85 -0.62 -2.40 16 7 C -0.07 -0.59 9.54 -39.20 -0.37 -0.96 16 8 C -0.14 -0.98 10.02 -39.63 -0.40 -1.38 16 9 C -0.08 -0.54 10.03 -39.53 -0.40 -0.94 16 10 C -0.16 -1.28 9.98 -39.47 -0.39 -1.67 16 11 C 0.17 1.74 6.72 -38.70 -0.26 1.48 16 12 O -0.48 -5.20 11.58 -40.54 -0.47 -5.67 16 13 C -0.12 -1.63 5.54 -25.22 -0.14 -1.77 16 14 C 0.04 0.58 5.93 -2.06 -0.01 0.57 16 15 N -0.48 -7.77 4.98 -231.27 -1.15 -8.92 16 16 C 0.03 0.58 5.32 -4.98 -0.03 0.56 16 17 C 0.45 10.44 7.63 -10.98 -0.08 10.35 16 18 O -0.58 -15.52 14.80 5.54 0.08 -15.44 16 19 N -0.57 -14.27 5.29 -10.96 -0.06 -14.33 16 20 C -0.30 -8.26 9.68 -14.94 -0.14 -8.40 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 24 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 28 C 0.03 0.33 5.65 -2.18 -0.01 0.32 16 29 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.06 6.17 -51.93 -0.32 0.74 16 32 H 0.40 3.80 6.30 -40.82 -0.26 3.54 16 33 H 0.13 0.89 6.40 -52.49 -0.34 0.56 16 34 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.40 2.91 9.06 45.56 0.41 3.32 16 38 H 0.07 1.16 7.40 -51.93 -0.38 0.77 16 39 H 0.07 0.98 7.71 -51.93 -0.40 0.58 16 40 H 0.04 0.60 7.75 -51.93 -0.40 0.20 16 41 H 0.10 1.84 7.23 -51.93 -0.38 1.47 16 42 H 0.05 0.82 7.77 -51.93 -0.40 0.42 16 43 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16 44 H 0.39 9.42 7.90 -40.82 -0.32 9.09 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.06 0.65 7.72 -51.93 -0.40 0.25 16 47 H 0.08 0.89 7.76 -51.93 -0.40 0.49 16 LS Contribution 384.74 15.07 5.80 5.80 Total: -1.00 -34.53 384.74 -9.05 -43.58 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -5.64 Total: 15.30 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -2.87 Total: 3.72 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.72 Total: -55.28 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.59 Total: -29.14 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.53 -9.05 -43.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278355531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.399 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds