Wall clock time and date at job start Wed Apr 1 2020 05:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 110.29285 * 2 1 4 4 C 1.34783 * 119.99586 * 59.29558 * 3 2 1 5 5 O 1.21586 * 120.00370 * 0.02562 * 4 3 2 6 6 C 1.47536 * 119.99770 * 180.02562 * 4 3 2 7 7 C 1.39707 * 120.19078 * 0.02562 * 6 4 3 8 8 C 1.37791 * 119.90982 * 179.97438 * 7 6 4 9 9 C 1.38554 * 120.29845 * 359.97438 * 8 7 6 10 10 C 1.38060 * 120.38911 * 359.72074 * 9 8 7 11 11 C 1.38712 * 120.07927 * 0.56099 * 10 9 8 12 12 O 1.35655 * 120.14688 * 179.71584 * 11 10 9 13 13 C 1.54261 * 110.32394 * 122.12838 * 2 1 3 14 14 C 1.54610 * 104.95055 * 119.02140 * 13 2 1 15 15 N 1.48558 * 104.63628 * 23.78164 * 14 13 2 16 16 C 1.46896 * 111.00237 * 200.99874 * 15 14 13 17 17 C 1.50698 * 109.46845 * 285.41572 * 16 15 14 18 18 O 1.21296 * 120.00292 * 0.02562 * 17 16 15 19 19 N 1.34783 * 119.99963 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00014 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00384 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00011 * 180.02562 * 20 19 17 23 23 N 1.31416 * 120.00178 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99992 * 180.02562 * 22 20 19 25 25 H 1.48490 * 109.47334 * 89.99763 * 24 22 20 26 26 H 1.48501 * 109.46983 * 209.99823 * 24 22 20 27 27 H 1.48503 * 109.47062 * 329.99614 * 24 22 20 28 28 C 1.48565 * 104.22112 * 320.55559 * 15 14 13 29 29 H 1.09008 * 109.46693 * 60.69554 * 1 2 3 30 30 H 1.08993 * 109.47625 * 180.69729 * 1 2 3 31 31 H 1.08995 * 109.47229 * 300.70536 * 1 2 3 32 32 H 0.96995 * 120.00509 * 239.30089 * 3 2 1 33 33 H 1.07994 * 120.04923 * 0.02562 * 7 6 4 34 34 H 1.07996 * 119.85699 * 180.02562 * 8 7 6 35 35 H 1.07997 * 119.80699 * 179.97438 * 9 8 7 36 36 H 1.07996 * 119.96081 * 180.27298 * 10 9 8 37 37 H 0.96700 * 114.00230 * 269.72528 * 12 11 10 38 38 H 1.08999 * 110.32543 * 237.89449 * 13 2 1 39 39 H 1.09001 * 110.32044 * 0.09996 * 13 2 1 40 40 H 1.08998 * 110.36175 * 265.00524 * 14 13 2 41 41 H 1.09001 * 110.52344 * 142.64073 * 14 13 2 42 42 H 1.08993 * 109.47455 * 45.41757 * 16 15 14 43 43 H 1.09003 * 109.47012 * 165.41902 * 16 15 14 44 44 H 0.97003 * 119.99829 * 0.02562 * 19 17 16 45 45 H 0.96993 * 119.99784 * 180.02562 * 23 22 20 46 46 H 1.08999 * 110.41102 * 280.70290 * 28 15 14 47 47 H 1.08994 * 110.41190 * 158.26311 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0381 1.3741 0.0000 4 6 1.7127 2.2128 1.0037 5 8 0.9980 1.8289 1.9093 6 6 2.2239 3.5968 1.0034 7 6 3.0450 4.0422 -0.0354 8 6 3.5188 5.3361 -0.0301 9 6 3.1842 6.1988 1.0012 10 6 2.3685 5.7735 2.0307 11 6 1.8874 4.4725 2.0443 12 8 1.0906 4.0514 3.0582 13 6 2.0658 -0.7693 1.2250 14 6 2.8839 -1.9405 0.6340 15 7 3.2708 -1.4803 -0.7245 16 6 3.6090 -2.6183 -1.5895 17 6 4.9598 -3.1612 -1.2000 18 8 5.5795 -2.6507 -0.2909 19 7 5.4788 -4.2149 -1.8612 20 6 6.7078 -4.7085 -1.5072 21 1 7.2601 -4.2533 -0.6983 22 6 7.2431 -5.7943 -2.1891 23 7 6.5715 -6.3478 -3.1738 24 14 8.9175 -6.4673 -1.7063 25 1 8.7489 -7.5177 -0.6704 26 1 9.5793 -7.0515 -2.9005 27 1 9.7555 -5.3676 -1.1644 28 6 2.0662 -0.7699 -1.2260 29 1 -0.3633 0.5030 -0.8962 30 1 -0.3634 -1.0275 0.0125 31 1 -0.3633 0.5247 0.8835 32 1 2.6085 1.6803 -0.7222 33 1 3.3075 3.3737 -0.8419 34 1 4.1531 5.6797 -0.8338 35 1 3.5603 7.2112 0.9976 36 1 2.1085 6.4530 2.8287 37 1 1.5722 3.6666 3.8032 38 1 2.7067 -0.1246 1.8264 39 1 1.2387 -1.1484 1.8254 40 1 2.2692 -2.8384 0.5704 41 1 3.7711 -2.1302 1.2382 42 1 2.8568 -3.3986 -1.4741 43 1 3.6353 -2.2898 -2.6285 44 1 4.9830 -4.6234 -2.5880 45 1 6.9451 -7.1061 -3.6495 46 1 1.3236 -1.4846 -1.5807 47 1 2.3378 -0.0762 -2.0216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278355531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:27 Heat of formation + Delta-G solvation = -96.723619 kcal Electronic energy + Delta-G solvation = -30273.880332 eV Core-core repulsion = 26035.006206 eV Total energy + Delta-G solvation = -4238.874125 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.75854 -40.69249 -39.88025 -38.71590 -37.63182 -36.04559 -35.44122 -33.42773 -33.15600 -31.60091 -30.76492 -30.42374 -28.96190 -26.92315 -25.58189 -24.84537 -23.49621 -22.72701 -21.93347 -21.03723 -20.40536 -19.83861 -19.48952 -18.53559 -17.75718 -17.52313 -16.75918 -16.63773 -16.51281 -16.33717 -16.02949 -15.92234 -15.70782 -15.48380 -15.30499 -15.05387 -14.61946 -14.44912 -14.14453 -13.94953 -13.52908 -13.50234 -13.28706 -13.14790 -13.11900 -12.99920 -12.92070 -12.69096 -12.62198 -12.40826 -12.20119 -12.11979 -11.97931 -11.85009 -11.64491 -11.47182 -10.62247 -10.32226 -10.16434 -9.99261 -9.94256 -9.64394 -9.37746 -8.45548 -5.93724 -0.18360 0.28655 1.37847 1.41480 1.53958 1.90901 2.08270 2.14477 2.28895 2.75417 2.80011 3.21087 3.28531 3.32846 3.45069 3.73229 3.75697 3.86800 4.00418 4.12211 4.18096 4.28063 4.37222 4.40386 4.43511 4.44917 4.54113 4.61433 4.65426 4.73564 4.78338 4.80540 4.87236 4.91021 5.08151 5.12429 5.23692 5.30849 5.34287 5.41827 5.45626 5.58540 5.80716 5.82914 5.88383 6.08111 6.58879 6.62813 6.79207 7.15034 7.27536 7.58972 8.15586 8.71891 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016790 B = 0.002139 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.226735 B =13085.418558 C =13898.589120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.178 3.822 3 N -0.704 5.704 4 C 0.555 3.445 5 O -0.553 6.553 6 C -0.191 4.191 7 C -0.073 4.073 8 C -0.138 4.138 9 C -0.072 4.072 10 C -0.164 4.164 11 C 0.145 3.855 12 O -0.498 6.498 13 C -0.109 4.109 14 C 0.040 3.960 15 N -0.503 5.503 16 C 0.046 3.954 17 C 0.442 3.558 18 O -0.617 6.617 19 N -0.576 5.576 20 C -0.330 4.330 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.274 1.274 28 C 0.033 3.967 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.409 0.591 33 H 0.145 0.855 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.150 0.850 37 H 0.404 0.596 38 H 0.052 0.948 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.081 0.919 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.044 22.244 2.428 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.092 3.908 3 N -0.357 5.357 4 C 0.343 3.657 5 O -0.432 6.432 6 C -0.195 4.195 7 C -0.092 4.092 8 C -0.156 4.156 9 C -0.090 4.090 10 C -0.182 4.182 11 C 0.099 3.901 12 O -0.310 6.310 13 C -0.148 4.148 14 C -0.088 4.088 15 N -0.227 5.227 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.503 6.503 19 N -0.214 5.214 20 C -0.460 4.460 21 H 0.094 0.906 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.814 3.186 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.199 1.199 28 C -0.094 4.094 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.246 0.754 33 H 0.163 0.837 34 H 0.176 0.824 35 H 0.180 0.820 36 H 0.167 0.833 37 H 0.264 0.736 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.135 0.865 44 H 0.230 0.770 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.069 22.651 3.186 25.863 hybrid contribution 0.654 -1.570 0.015 1.701 sum -11.415 21.081 3.201 24.186 Atomic orbital electron populations 1.22129 0.92442 1.03212 1.03085 1.20964 0.94275 0.80951 0.94643 1.45982 1.52151 1.11456 1.26069 1.18344 0.80077 0.85356 0.81889 1.90739 1.38068 1.77766 1.36677 1.20519 1.04743 0.94056 1.00145 1.21541 0.93872 0.97349 0.96450 1.21517 1.00977 0.92945 1.00154 1.21662 0.94257 1.01165 0.91925 1.21694 0.99469 0.95118 1.01919 1.18820 0.90090 0.92194 0.88999 1.84686 1.34742 1.81706 1.29879 1.22600 0.98878 0.96030 0.97303 1.23090 0.98067 0.96645 0.91025 1.65057 1.33244 1.22622 1.01758 1.21939 0.93595 0.93675 0.99299 1.20800 0.89499 0.82033 0.84700 1.90494 1.64168 1.61841 1.33792 1.41929 1.18157 1.28546 1.32757 1.19611 0.95822 1.13272 1.17273 0.90572 1.25999 1.03112 0.96503 0.95688 1.69666 1.40095 1.24181 1.22210 0.84963 0.77375 0.78223 0.77995 1.19781 1.19471 1.19884 1.23525 0.91408 0.98103 0.96401 0.91136 0.90443 0.92139 0.75365 0.83708 0.82357 0.82028 0.83276 0.73627 0.92921 0.90141 0.93238 0.92673 0.90852 0.86549 0.76989 0.91354 0.90082 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.15 71.98 0.59 -2.50 16 2 C 0.18 4.06 1.01 4.50 0.00 4.06 16 3 N -0.70 -15.40 5.04 -421.99 -2.13 -17.53 16 4 C 0.55 14.22 6.94 86.69 0.60 14.82 16 5 O -0.55 -17.32 12.44 16.93 0.21 -17.11 16 6 C -0.19 -4.13 5.89 -20.01 -0.12 -4.24 16 7 C -0.07 -1.15 9.54 22.52 0.21 -0.94 16 8 C -0.14 -1.60 10.02 22.24 0.22 -1.38 16 9 C -0.07 -0.78 10.03 22.30 0.22 -0.56 16 10 C -0.16 -2.42 9.98 22.34 0.22 -2.20 16 11 C 0.15 3.04 6.72 22.84 0.15 3.19 16 12 O -0.50 -11.37 11.58 -68.78 -0.80 -12.16 16 13 C -0.11 -3.07 5.54 31.57 0.18 -2.89 16 14 C 0.04 1.29 5.93 86.53 0.51 1.80 16 15 N -0.50 -15.60 4.98 -885.59 -4.41 -20.01 16 16 C 0.05 1.53 5.32 85.56 0.46 1.99 16 17 C 0.44 20.89 7.63 87.66 0.67 21.56 16 18 O -0.62 -34.36 14.80 -3.08 -0.05 -34.41 16 19 N -0.58 -29.36 5.29 -306.98 -1.62 -30.99 16 20 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 21 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 22 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 23 N -0.92 -49.45 13.05 21.66 0.28 -49.17 16 24 Si 0.99 43.05 29.55 68.60 2.03 45.07 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 28 C 0.03 0.71 5.65 86.45 0.49 1.20 16 29 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.55 6.17 -2.39 -0.01 1.53 16 32 H 0.41 7.20 6.30 -92.71 -0.58 6.61 16 33 H 0.15 1.72 6.40 -2.91 -0.02 1.70 16 34 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 35 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 36 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 37 H 0.40 6.64 9.06 -74.06 -0.67 5.97 16 38 H 0.05 1.71 7.40 -2.39 -0.02 1.69 16 39 H 0.08 2.14 7.71 -2.39 -0.02 2.12 16 40 H 0.05 1.48 7.75 -2.39 -0.02 1.46 16 41 H 0.05 2.23 7.23 -2.39 -0.02 2.21 16 42 H 0.07 2.14 7.77 -2.39 -0.02 2.13 16 43 H 0.12 3.24 8.08 -2.39 -0.02 3.22 16 44 H 0.40 19.05 7.90 -92.71 -0.73 18.32 16 45 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 46 H 0.08 1.44 7.72 -2.39 -0.02 1.42 16 47 H 0.11 1.85 7.76 -2.39 -0.02 1.83 16 Total: -1.00 -77.51 384.74 -1.73 -79.24 By element: Atomic # 1 Polarization: 42.29 SS G_CDS: -0.95 Total: 41.34 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 5.69 Total: 15.72 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -7.87 Total: -117.69 kcal Atomic # 8 Polarization: -63.05 SS G_CDS: -0.63 Total: -63.68 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -77.51 -1.73 -79.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278355531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.485 kcal (2) G-P(sol) polarization free energy of solvation -77.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds