Wall clock time and date at job start Wed Apr 1 2020 04:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38665 * 120.41869 * 2 1 4 4 C 1.38631 * 118.42175 * 179.75427 * 3 2 1 5 5 C 1.38228 * 119.16024 * 0.50947 * 4 3 2 6 6 C 1.50700 * 119.62295 * 179.75588 * 5 4 3 7 7 C 1.52999 * 109.47312 * 124.72153 * 6 5 4 8 8 N 1.46495 * 109.46925 * 180.02562 * 7 6 5 9 9 C 1.34783 * 119.99827 * 180.02562 * 8 7 6 10 10 O 1.21348 * 119.99988 * 359.97438 * 9 8 7 11 11 C 1.49449 * 119.99799 * 180.02562 * 9 8 7 12 12 O 1.21351 * 120.00163 * 0.02562 * 11 9 8 13 13 N 1.34775 * 119.99970 * 179.97438 * 11 9 8 14 14 C 1.47021 * 125.64789 * 0.03799 * 13 11 9 15 15 C 1.54370 * 107.28813 * 181.05641 * 14 13 11 16 16 C 1.55147 * 102.92092 * 22.14333 * 15 14 13 17 17 O 1.42905 * 111.00578 * 82.63751 * 16 15 14 18 18 C 1.50702 * 111.00308 * 206.45025 * 16 15 14 19 19 H 1.08002 * 120.00299 * 356.82421 * 18 16 15 20 20 C 1.37884 * 119.99942 * 176.53980 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48501 * 109.47188 * 90.00793 * 22 20 18 24 24 H 1.48501 * 109.47085 * 210.00372 * 22 20 18 25 25 H 1.48498 * 109.47634 * 330.00608 * 22 20 18 26 26 C 1.47423 * 125.64985 * 179.97438 * 13 11 9 27 27 N 1.31856 * 120.76177 * 359.47630 * 5 4 3 28 28 C 1.31893 * 121.72602 * 0.27898 * 27 5 4 29 29 H 1.09000 * 109.47420 * 269.97999 * 1 2 3 30 30 H 1.08999 * 109.47477 * 29.98087 * 1 2 3 31 31 H 1.09005 * 109.47332 * 149.97928 * 1 2 3 32 32 H 1.08001 * 120.79019 * 0.04438 * 3 2 1 33 33 H 1.07998 * 120.42528 * 180.28307 * 4 3 2 34 34 H 1.08996 * 109.46482 * 4.72338 * 6 5 4 35 35 H 1.09002 * 109.47037 * 244.72749 * 6 5 4 36 36 H 1.09004 * 109.46587 * 60.00452 * 7 6 5 37 37 H 1.08993 * 109.47425 * 300.00440 * 7 6 5 38 38 H 0.96996 * 120.00455 * 0.02562 * 8 7 6 39 39 H 1.09001 * 109.88518 * 300.44553 * 14 13 11 40 40 H 1.09002 * 109.88165 * 61.60862 * 14 13 11 41 41 H 1.09001 * 110.70699 * 263.79361 * 15 14 13 42 42 H 1.09008 * 110.75075 * 140.51110 * 15 14 13 43 43 H 0.96701 * 113.99475 * 183.17547 * 17 16 15 44 44 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 45 45 H 1.08996 * 110.36708 * 37.06908 * 26 13 11 46 46 H 1.08999 * 110.36888 * 274.74656 * 26 13 11 47 47 H 1.07999 * 119.61705 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1475 0.0052 5 6 4.2256 -0.0823 -0.0005 6 6 5.7312 -0.1470 -0.0005 7 6 6.2053 -0.9953 1.1812 8 7 7.6689 -1.0576 1.1815 9 6 8.3135 -1.7556 2.1375 10 8 7.6815 -2.3321 2.9981 11 6 9.8067 -1.8187 2.1381 12 8 10.4388 -1.2411 1.2782 13 7 10.4513 -2.5163 3.0943 14 6 9.8127 -3.2592 4.1905 15 6 10.9409 -3.8733 5.0468 16 6 12.1599 -2.9744 4.7108 17 8 12.1457 -1.7786 5.4932 18 6 13.4530 -3.7250 4.9000 19 1 13.4399 -4.7363 5.2787 20 6 14.6523 -3.1226 4.5840 21 7 14.6682 -1.8911 4.1228 22 14 16.2545 -4.0557 4.8113 23 1 16.5801 -4.7916 3.5633 24 1 17.3461 -3.0972 5.1197 25 1 16.1113 -5.0199 5.9315 26 6 11.9135 -2.6618 3.2135 27 7 3.5255 -1.1996 -0.0005 28 6 2.2066 -1.1917 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6889 2.1423 0.0007 33 1 4.1736 2.0591 0.0100 34 1 6.1380 0.8603 0.0890 35 1 6.0756 -0.5964 -0.9319 36 1 5.7984 -2.0026 1.0916 37 1 5.8609 -0.5459 2.1125 38 1 8.1742 -0.5965 0.4938 39 1 9.2140 -2.5810 4.7986 40 1 9.1826 -4.0505 3.7844 41 1 11.1299 -4.9056 4.7521 42 1 10.6974 -3.8124 6.1076 43 1 12.8615 -1.1631 5.2837 44 1 15.5121 -1.4672 3.9009 45 1 12.4112 -1.7336 2.9329 46 1 12.2648 -3.4848 2.5911 47 1 1.6672 -2.1273 -0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326153830.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:51 Heat of formation + Delta-G solvation = -86.659784 kcal Electronic energy + Delta-G solvation = -29483.441091 eV Core-core repulsion = 25245.003366 eV Total energy + Delta-G solvation = -4238.437725 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.75314 -40.24167 -38.46330 -37.14479 -35.95521 -34.40792 -33.89289 -32.63400 -32.20456 -30.70392 -30.19978 -27.93588 -27.20951 -25.78857 -24.58047 -23.79537 -22.88438 -21.68022 -21.45736 -19.77782 -19.42723 -17.35990 -17.18550 -17.13418 -16.67183 -16.21586 -15.88361 -15.54667 -15.34315 -15.11849 -14.97640 -14.66137 -14.46365 -14.08312 -13.82377 -13.56486 -13.24330 -13.17867 -13.01684 -12.95976 -12.90029 -12.74431 -12.25603 -12.11872 -11.96625 -11.67770 -11.63862 -11.49899 -11.07282 -11.05407 -10.75928 -10.54457 -10.48463 -10.19249 -10.17066 -9.79183 -9.37942 -9.19699 -9.16349 -9.07905 -8.69200 -8.40415 -7.87530 -6.29985 -4.39266 0.67538 0.89452 1.84429 2.66520 3.20497 3.28222 3.31362 3.36346 3.64701 3.81421 3.99376 4.25771 4.31628 4.38572 4.48199 4.58015 4.68737 4.82255 4.84963 4.98019 4.98528 5.09824 5.11543 5.29700 5.36058 5.51064 5.51617 5.62436 5.75422 5.81331 5.82335 5.86257 5.87270 6.08116 6.22470 6.31882 6.38356 6.53298 6.75025 6.81329 6.86259 7.18263 7.27374 7.33201 7.62522 7.72816 7.90886 8.00841 8.08455 8.47776 8.64849 9.29747 9.40624 10.77400 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.033603 B = 0.001732 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.061981 B =16165.992072 C =16511.130958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.144 4.144 3 C -0.075 4.075 4 C -0.161 4.161 5 C 0.128 3.872 6 C -0.082 4.082 7 C 0.129 3.871 8 N -0.709 5.709 9 C 0.510 3.490 10 O -0.515 6.515 11 C 0.508 3.492 12 O -0.539 6.539 13 N -0.574 5.574 14 C 0.111 3.889 15 C -0.122 4.122 16 C 0.248 3.752 17 O -0.582 6.582 18 C -0.537 4.537 19 H 0.068 0.932 20 C 0.071 3.929 21 N -0.895 5.895 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.091 3.909 27 N -0.475 5.475 28 C 0.104 3.896 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.411 0.589 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.383 0.617 44 H 0.271 0.729 45 H 0.089 0.911 46 H 0.067 0.933 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.299 5.758 -9.553 26.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.146 4.146 3 C -0.101 4.101 4 C -0.181 4.181 5 C -0.010 4.010 6 C -0.120 4.120 7 C 0.005 3.995 8 N -0.364 5.364 9 C 0.291 3.709 10 O -0.390 6.390 11 C 0.290 3.710 12 O -0.419 6.419 13 N -0.306 5.306 14 C -0.011 4.011 15 C -0.160 4.160 16 C 0.208 3.792 17 O -0.391 6.391 18 C -0.575 4.575 19 H 0.087 0.913 20 C -0.133 4.133 21 N -0.534 5.534 22 Si 0.733 3.267 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.030 4.030 27 N -0.183 5.183 28 C -0.054 4.054 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.247 0.753 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.234 0.766 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.086 0.914 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -24.413 4.728 -9.215 26.519 hybrid contribution 1.078 0.936 -0.596 1.547 sum -23.335 5.664 -9.811 25.939 Atomic orbital electron populations 1.20723 0.90148 1.03144 1.02715 1.20965 0.97696 0.94308 1.01623 1.21493 0.93977 0.98256 0.96402 1.22001 0.95224 0.98955 1.01953 1.20961 0.95795 0.88642 0.95625 1.20721 0.89431 1.01869 0.99961 1.21279 0.78933 1.01424 0.97856 1.45718 1.07315 1.52710 1.30651 1.20393 0.89138 0.79469 0.81859 1.90733 1.68518 1.43532 1.36226 1.19565 0.87459 0.81182 0.82769 1.90717 1.68036 1.45725 1.37382 1.48648 1.10114 1.46424 1.25380 1.22155 0.95596 0.95288 0.88090 1.22725 0.94604 0.99144 0.99488 1.19634 0.91943 0.83189 0.84479 1.86112 1.55894 1.32731 1.64329 1.21492 0.90284 1.00943 1.44794 0.91336 1.25092 0.99767 0.95024 0.93373 1.69653 1.27694 1.12521 1.43495 0.86374 0.82145 0.79564 0.78663 1.20411 1.20995 1.19651 1.23499 0.75253 1.02693 1.01513 1.67477 1.08273 1.30938 1.11616 1.22684 0.89600 0.97604 0.95484 0.90800 0.91352 0.91096 0.84793 0.84545 0.89278 0.88900 0.89894 0.91295 0.75259 0.91171 0.91715 0.90373 0.90500 0.76616 0.91916 0.89315 0.91432 0.82700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.44 10.04 36.01 0.36 -0.08 16 2 C -0.14 -0.97 5.90 -104.48 -0.62 -1.59 16 3 C -0.08 -0.49 9.86 -39.28 -0.39 -0.88 16 4 C -0.16 -1.19 9.71 -39.44 -0.38 -1.57 16 5 C 0.13 1.17 6.18 -82.59 -0.51 0.66 16 6 C -0.08 -0.68 5.73 -27.88 -0.16 -0.84 16 7 C 0.13 1.46 5.53 -4.04 -0.02 1.43 16 8 N -0.71 -9.47 5.55 -60.73 -0.34 -9.81 16 9 C 0.51 8.91 7.86 -11.58 -0.09 8.82 16 10 O -0.52 -9.79 14.12 5.50 0.08 -9.71 16 11 C 0.51 10.39 7.91 -11.59 -0.09 10.30 16 12 O -0.54 -11.86 16.73 5.50 0.09 -11.77 16 13 N -0.57 -12.40 3.33 -170.98 -0.57 -12.96 16 14 C 0.11 2.21 5.49 -3.04 -0.02 2.19 16 15 C -0.12 -2.52 6.13 -24.88 -0.15 -2.67 16 16 C 0.25 6.06 0.88 -89.61 -0.08 5.98 16 17 O -0.58 -14.98 13.17 -35.23 -0.46 -15.44 16 18 C -0.54 -13.91 8.26 -34.44 -0.28 -14.19 16 19 H 0.07 1.74 7.78 -52.49 -0.41 1.33 16 20 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 21 N -0.89 -23.58 10.69 55.43 0.59 -22.99 16 22 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 C 0.09 2.19 5.50 -2.52 -0.01 2.17 16 27 N -0.47 -4.94 9.88 -9.47 -0.09 -5.04 16 28 C 0.10 0.86 10.86 -17.55 -0.19 0.67 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.21 8.10 -51.93 -0.42 -0.21 16 31 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 32 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 33 H 0.14 0.71 7.95 -52.49 -0.42 0.29 16 34 H 0.09 0.57 7.87 -51.93 -0.41 0.16 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.06 7.95 -51.93 -0.41 0.65 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.41 4.87 7.94 -40.82 -0.32 4.55 16 39 H 0.07 1.41 7.58 -51.93 -0.39 1.01 16 40 H 0.06 1.19 7.70 -51.93 -0.40 0.79 16 41 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 42 H 0.08 1.53 8.14 -51.92 -0.42 1.11 16 43 H 0.38 10.07 7.26 45.56 0.33 10.40 16 44 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 45 H 0.09 2.35 7.47 -51.93 -0.39 1.96 16 46 H 0.07 1.64 8.03 -51.93 -0.42 1.22 16 47 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 394.18 15.07 5.94 5.94 Total: -1.00 -31.27 394.18 -8.68 -39.95 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -6.17 Total: 14.52 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: -2.73 Total: 12.14 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.41 Total: -50.80 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.29 Total: -36.93 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.27 -8.68 -39.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326153830.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.712 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds