Wall clock time and date at job start Wed Apr 1 2020 04:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38665 * 120.41869 * 2 1 4 4 C 1.38631 * 118.42175 * 179.75427 * 3 2 1 5 5 C 1.38228 * 119.16024 * 0.50947 * 4 3 2 6 6 C 1.50700 * 119.62295 * 179.75588 * 5 4 3 7 7 C 1.52999 * 109.47312 * 124.72153 * 6 5 4 8 8 N 1.46495 * 109.46925 * 180.02562 * 7 6 5 9 9 C 1.34783 * 119.99827 * 180.02562 * 8 7 6 10 10 O 1.21348 * 119.99988 * 359.97438 * 9 8 7 11 11 C 1.49449 * 119.99799 * 180.02562 * 9 8 7 12 12 O 1.21351 * 120.00163 * 0.02562 * 11 9 8 13 13 N 1.34775 * 119.99970 * 179.97438 * 11 9 8 14 14 C 1.47021 * 125.64789 * 0.03799 * 13 11 9 15 15 C 1.54370 * 107.28813 * 181.05641 * 14 13 11 16 16 C 1.55147 * 102.92092 * 22.14333 * 15 14 13 17 17 O 1.42905 * 111.00578 * 82.63751 * 16 15 14 18 18 C 1.50702 * 111.00308 * 206.45025 * 16 15 14 19 19 H 1.08002 * 120.00299 * 356.82421 * 18 16 15 20 20 C 1.37884 * 119.99942 * 176.53980 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48501 * 109.47188 * 90.00793 * 22 20 18 24 24 H 1.48501 * 109.47085 * 210.00372 * 22 20 18 25 25 H 1.48498 * 109.47634 * 330.00608 * 22 20 18 26 26 C 1.47423 * 125.64985 * 179.97438 * 13 11 9 27 27 N 1.31856 * 120.76177 * 359.47630 * 5 4 3 28 28 C 1.31893 * 121.72602 * 0.27898 * 27 5 4 29 29 H 1.09000 * 109.47420 * 269.97999 * 1 2 3 30 30 H 1.08999 * 109.47477 * 29.98087 * 1 2 3 31 31 H 1.09005 * 109.47332 * 149.97928 * 1 2 3 32 32 H 1.08001 * 120.79019 * 0.04438 * 3 2 1 33 33 H 1.07998 * 120.42528 * 180.28307 * 4 3 2 34 34 H 1.08996 * 109.46482 * 4.72338 * 6 5 4 35 35 H 1.09002 * 109.47037 * 244.72749 * 6 5 4 36 36 H 1.09004 * 109.46587 * 60.00452 * 7 6 5 37 37 H 1.08993 * 109.47425 * 300.00440 * 7 6 5 38 38 H 0.96996 * 120.00455 * 0.02562 * 8 7 6 39 39 H 1.09001 * 109.88518 * 300.44553 * 14 13 11 40 40 H 1.09002 * 109.88165 * 61.60862 * 14 13 11 41 41 H 1.09001 * 110.70699 * 263.79361 * 15 14 13 42 42 H 1.09008 * 110.75075 * 140.51110 * 15 14 13 43 43 H 0.96701 * 113.99475 * 183.17547 * 17 16 15 44 44 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 45 45 H 1.08996 * 110.36708 * 37.06908 * 26 13 11 46 46 H 1.08999 * 110.36888 * 274.74656 * 26 13 11 47 47 H 1.07999 * 119.61705 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1475 0.0052 5 6 4.2256 -0.0823 -0.0005 6 6 5.7312 -0.1470 -0.0005 7 6 6.2053 -0.9953 1.1812 8 7 7.6689 -1.0576 1.1815 9 6 8.3135 -1.7556 2.1375 10 8 7.6815 -2.3321 2.9981 11 6 9.8067 -1.8187 2.1381 12 8 10.4388 -1.2411 1.2782 13 7 10.4513 -2.5163 3.0943 14 6 9.8127 -3.2592 4.1905 15 6 10.9409 -3.8733 5.0468 16 6 12.1599 -2.9744 4.7108 17 8 12.1457 -1.7786 5.4932 18 6 13.4530 -3.7250 4.9000 19 1 13.4399 -4.7363 5.2787 20 6 14.6523 -3.1226 4.5840 21 7 14.6682 -1.8911 4.1228 22 14 16.2545 -4.0557 4.8113 23 1 16.5801 -4.7916 3.5633 24 1 17.3461 -3.0972 5.1197 25 1 16.1113 -5.0199 5.9315 26 6 11.9135 -2.6618 3.2135 27 7 3.5255 -1.1996 -0.0005 28 6 2.2066 -1.1917 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6889 2.1423 0.0007 33 1 4.1736 2.0591 0.0100 34 1 6.1380 0.8603 0.0890 35 1 6.0756 -0.5964 -0.9319 36 1 5.7984 -2.0026 1.0916 37 1 5.8609 -0.5459 2.1125 38 1 8.1742 -0.5965 0.4938 39 1 9.2140 -2.5810 4.7986 40 1 9.1826 -4.0505 3.7844 41 1 11.1299 -4.9056 4.7521 42 1 10.6974 -3.8124 6.1076 43 1 12.8615 -1.1631 5.2837 44 1 15.5121 -1.4672 3.9009 45 1 12.4112 -1.7336 2.9329 46 1 12.2648 -3.4848 2.5911 47 1 1.6672 -2.1273 -0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326153830.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:51 Heat of formation + Delta-G solvation = -109.478097 kcal Electronic energy + Delta-G solvation = -29484.430567 eV Core-core repulsion = 25245.003366 eV Total energy + Delta-G solvation = -4239.427201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.83807 -41.25167 -40.03459 -38.88095 -37.01594 -36.04962 -34.76125 -34.20502 -33.25789 -31.96201 -31.42111 -29.73205 -28.15366 -27.30024 -25.66528 -24.81297 -23.93089 -22.91938 -22.24301 -21.55228 -20.91522 -19.18837 -18.77439 -18.10697 -17.68952 -17.35499 -17.13473 -16.98749 -16.60489 -16.26424 -16.18378 -15.96016 -15.72268 -15.15788 -15.04734 -14.84035 -14.68492 -14.43699 -14.07991 -13.97558 -13.77423 -13.69607 -13.51164 -13.33822 -13.25848 -12.86854 -12.84331 -12.71519 -12.53409 -12.51850 -12.37030 -12.33419 -12.23365 -12.11448 -11.23339 -10.76824 -10.70934 -10.60258 -10.42808 -10.36428 -10.27235 -9.68626 -9.64986 -8.25736 -6.42435 0.12257 0.32385 0.36343 1.25245 1.44287 1.46557 1.56207 2.10417 2.37358 2.48952 2.79705 3.00390 3.24598 3.40089 3.73216 3.76932 3.92617 3.96985 4.05990 4.06433 4.11009 4.14476 4.19464 4.31652 4.41387 4.58543 4.65028 4.71992 4.75506 4.82951 4.83298 4.92307 4.95523 4.96243 5.05342 5.11452 5.15521 5.21614 5.23143 5.33003 5.38044 5.42855 5.74748 5.81274 5.96078 6.05526 6.35941 6.61235 6.67366 6.90655 7.04743 7.28391 7.36134 8.80339 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.033603 B = 0.001732 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.061981 B =16165.992072 C =16511.130958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.143 4.143 3 C -0.082 4.082 4 C -0.163 4.163 5 C 0.104 3.896 6 C -0.072 4.072 7 C 0.134 3.866 8 N -0.687 5.687 9 C 0.516 3.484 10 O -0.532 6.532 11 C 0.503 3.497 12 O -0.559 6.559 13 N -0.583 5.583 14 C 0.119 3.881 15 C -0.115 4.115 16 C 0.232 3.768 17 O -0.588 6.588 18 C -0.557 4.557 19 H 0.071 0.929 20 C 0.028 3.972 21 N -0.916 5.916 22 Si 0.967 3.033 23 H -0.275 1.275 24 H -0.283 1.283 25 H -0.267 1.267 26 C 0.105 3.895 27 N -0.508 5.508 28 C 0.082 3.918 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.420 0.580 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.376 0.624 44 H 0.271 0.729 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.913 6.106 -9.972 28.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.145 4.145 3 C -0.107 4.107 4 C -0.182 4.182 5 C -0.033 4.033 6 C -0.110 4.110 7 C 0.011 3.989 8 N -0.341 5.341 9 C 0.296 3.704 10 O -0.409 6.409 11 C 0.287 3.713 12 O -0.440 6.440 13 N -0.315 5.315 14 C -0.003 4.003 15 C -0.153 4.153 16 C 0.192 3.808 17 O -0.397 6.397 18 C -0.595 4.595 19 H 0.089 0.911 20 C -0.173 4.173 21 N -0.555 5.555 22 Si 0.792 3.208 23 H -0.201 1.201 24 H -0.209 1.209 25 H -0.191 1.191 26 C -0.017 4.017 27 N -0.217 5.217 28 C -0.075 4.075 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.178 0.822 33 H 0.176 0.824 34 H 0.130 0.870 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.258 0.742 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -26.067 5.086 -9.657 28.260 hybrid contribution 1.489 0.881 -0.515 1.805 sum -24.578 5.966 -10.173 27.261 Atomic orbital electron populations 1.20779 0.88210 1.04181 1.03367 1.21284 0.99137 0.93894 1.00164 1.21886 0.93927 0.99309 0.95599 1.22276 0.95929 0.99045 1.00984 1.21106 0.95942 0.89220 0.97082 1.20685 0.89417 1.02437 0.98495 1.21345 0.76970 1.01354 0.99252 1.45674 1.08331 1.50841 1.29277 1.19817 0.87495 0.80339 0.82759 1.90727 1.68160 1.44776 1.37211 1.20178 0.88986 0.80220 0.81951 1.90695 1.68966 1.46280 1.38012 1.48696 1.09242 1.47222 1.26311 1.22163 0.95181 0.95483 0.87462 1.22737 0.93090 0.99184 1.00289 1.19871 0.93236 0.83103 0.84586 1.86104 1.55577 1.33213 1.64785 1.21781 0.91278 1.01271 1.45129 0.91111 1.25816 1.02672 0.95756 0.93035 1.69757 1.28284 1.13588 1.43850 0.85420 0.78430 0.78354 0.78614 1.20102 1.20903 1.19146 1.23085 0.76777 1.00568 1.01236 1.67419 1.09458 1.32074 1.12759 1.23002 0.89324 0.98963 0.96181 0.90192 0.90073 0.90362 0.82207 0.82389 0.86960 0.88486 0.91324 0.91724 0.74181 0.91343 0.89823 0.88862 0.89648 0.77398 0.91925 0.92458 0.92373 0.81621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.04 71.24 0.72 0.08 16 2 C -0.14 -1.70 5.90 -19.78 -0.12 -1.82 16 3 C -0.08 -0.89 9.86 22.47 0.22 -0.66 16 4 C -0.16 -2.07 9.71 22.36 0.22 -1.85 16 5 C 0.10 1.79 6.18 42.55 0.26 2.06 16 6 C -0.07 -1.09 5.73 29.85 0.17 -0.92 16 7 C 0.13 2.91 5.53 86.38 0.48 3.39 16 8 N -0.69 -17.67 5.55 -464.42 -2.58 -20.24 16 9 C 0.52 17.70 7.86 87.27 0.69 18.39 16 10 O -0.53 -19.82 14.12 -3.24 -0.05 -19.86 16 11 C 0.50 20.61 7.91 87.27 0.69 21.30 16 12 O -0.56 -24.81 16.73 -3.25 -0.05 -24.87 16 13 N -0.58 -25.29 3.33 -813.23 -2.70 -27.99 16 14 C 0.12 4.62 5.49 86.75 0.48 5.10 16 15 C -0.12 -4.67 6.13 31.80 0.19 -4.48 16 16 C 0.23 11.43 0.88 -10.14 -0.01 11.42 16 17 O -0.59 -30.79 13.17 -148.98 -1.96 -32.75 16 18 C -0.56 -28.87 8.26 25.60 0.21 -28.65 16 19 H 0.07 3.55 7.78 -2.91 -0.02 3.53 16 20 C 0.03 1.46 5.29 84.66 0.45 1.91 16 21 N -0.92 -49.05 10.69 21.45 0.23 -48.82 16 22 Si 0.97 41.32 29.54 68.60 2.03 43.35 16 23 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 C 0.11 5.16 5.50 86.86 0.48 5.64 16 27 N -0.51 -10.41 9.88 -183.88 -1.82 -12.23 16 28 C 0.08 1.32 10.86 84.67 0.92 2.24 16 29 H 0.08 0.40 8.14 -2.39 -0.02 0.39 16 30 H 0.08 0.29 8.10 -2.39 -0.02 0.27 16 31 H 0.08 0.35 8.09 -2.38 -0.02 0.33 16 32 H 0.16 0.82 8.06 -2.91 -0.02 0.79 16 33 H 0.16 1.19 7.95 -2.91 -0.02 1.17 16 34 H 0.11 1.15 7.87 -2.39 -0.02 1.13 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.74 7.95 -2.39 -0.02 1.72 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.42 9.42 7.94 -92.71 -0.74 8.69 16 39 H 0.07 2.69 7.58 -2.39 -0.02 2.67 16 40 H 0.08 2.94 7.70 -2.39 -0.02 2.92 16 41 H 0.09 3.47 8.03 -2.39 -0.02 3.45 16 42 H 0.08 3.29 8.14 -2.38 -0.02 3.28 16 43 H 0.38 20.39 7.26 -74.06 -0.54 19.85 16 44 H 0.27 13.89 8.31 -92.70 -0.77 13.12 16 45 H 0.06 3.14 7.47 -2.39 -0.02 3.12 16 46 H 0.06 2.90 8.03 -2.39 -0.02 2.88 16 47 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -67.62 394.18 -1.13 -68.75 By element: Atomic # 1 Polarization: 41.80 SS G_CDS: -0.26 Total: 41.53 kcal Atomic # 6 Polarization: 27.09 SS G_CDS: 6.04 Total: 33.13 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -6.87 Total: -109.28 kcal Atomic # 8 Polarization: -75.42 SS G_CDS: -2.06 Total: -77.48 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -67.62 -1.13 -68.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326153830.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.731 kcal (2) G-P(sol) polarization free energy of solvation -67.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds