Wall clock time and date at job start Wed Apr 1 2020 04:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38683 * 120.41826 * 2 1 4 4 C 1.38628 * 118.42149 * 180.02562 * 3 2 1 5 5 C 1.38228 * 119.15847 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.61324 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.46958 * 125.00339 * 6 5 4 8 8 N 1.46497 * 109.47076 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00160 * 179.97438 * 8 7 6 10 10 O 1.21348 * 119.99666 * 0.02562 * 9 8 7 11 11 C 1.49448 * 120.00247 * 180.02562 * 9 8 7 12 12 O 1.21355 * 120.00006 * 359.97438 * 11 9 8 13 13 N 1.34774 * 120.00247 * 179.97438 * 11 9 8 14 14 C 1.47290 * 125.79121 * 359.97438 * 13 11 9 15 15 C 1.54325 * 107.30599 * 178.92556 * 14 13 11 16 16 C 1.55154 * 102.94303 * 337.81911 * 15 14 13 17 17 O 1.42902 * 111.00280 * 277.42723 * 16 15 14 18 18 C 1.50693 * 111.03939 * 153.59058 * 16 15 14 19 19 H 1.08004 * 120.00401 * 6.33015 * 18 16 15 20 20 C 1.37876 * 120.00383 * 186.33190 * 18 16 15 21 21 N 1.31512 * 119.99646 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 120.00223 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47147 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.46990 * 119.99902 * 22 20 18 25 25 H 1.48499 * 109.46928 * 239.99675 * 22 20 18 26 26 C 1.47425 * 125.65138 * 179.97438 * 13 11 9 27 27 N 1.31850 * 120.76966 * 0.25605 * 5 4 3 28 28 C 1.31889 * 121.72388 * 359.47536 * 27 5 4 29 29 H 1.09004 * 109.46583 * 89.99844 * 1 2 3 30 30 H 1.08993 * 109.46694 * 209.99855 * 1 2 3 31 31 H 1.09000 * 109.47047 * 330.00078 * 1 2 3 32 32 H 1.07998 * 120.78527 * 359.97438 * 3 2 1 33 33 H 1.07996 * 120.41828 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.47208 * 5.00096 * 6 5 4 35 35 H 1.08999 * 109.46824 * 244.99901 * 6 5 4 36 36 H 1.08998 * 109.46939 * 59.99544 * 7 6 5 37 37 H 1.09001 * 109.46501 * 299.99626 * 7 6 5 38 38 H 0.97005 * 120.00064 * 359.97438 * 8 7 6 39 39 H 1.09004 * 109.85762 * 59.50172 * 14 13 11 40 40 H 1.08995 * 110.00297 * 298.43119 * 14 13 11 41 41 H 1.09002 * 110.72180 * 219.45147 * 15 14 13 42 42 H 1.08997 * 110.72163 * 96.18354 * 15 14 13 43 43 H 0.96703 * 114.00194 * 173.65090 * 17 16 15 44 44 H 0.97010 * 119.99834 * 180.02562 * 21 20 18 45 45 H 1.09002 * 110.36696 * 85.25946 * 26 13 11 46 46 H 1.08995 * 110.36608 * 323.04783 * 26 13 11 47 47 H 1.08001 * 119.62343 * 180.27060 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1476 -0.0005 5 6 4.2256 -0.0822 -0.0016 6 6 5.7313 -0.1467 -0.0028 7 6 6.2063 -0.9958 1.1781 8 7 7.6699 -1.0590 1.1766 9 6 8.3153 -1.7568 2.1321 10 8 7.6839 -2.3332 2.9933 11 6 9.8084 -1.8208 2.1309 12 8 10.4397 -1.2448 1.2693 13 7 10.4538 -2.5182 3.0867 14 6 9.8183 -3.2614 4.1881 15 6 10.9472 -3.9195 5.0092 16 6 12.1231 -3.9781 3.9988 17 8 12.0077 -5.1175 3.1440 18 6 13.4503 -3.9741 4.7125 19 1 13.4842 -4.0372 5.7901 20 6 14.6215 -3.8899 3.9898 21 7 14.5803 -3.8136 2.6775 22 14 16.2667 -3.8858 4.8744 23 1 16.0414 -3.9810 6.3391 24 1 17.0754 -5.0458 4.4211 25 1 16.9912 -2.6267 4.5663 26 6 11.9160 -2.6646 3.2041 27 7 3.5256 -1.1995 -0.0072 28 6 2.2067 -1.1916 -0.0016 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6889 2.1424 -0.0004 33 1 4.1735 2.0593 -0.0001 34 1 6.1382 0.8606 0.0870 35 1 6.0749 -0.5957 -0.9346 36 1 5.7994 -2.0030 1.0883 37 1 5.8626 -0.5467 2.1099 38 1 8.1746 -0.5985 0.4879 39 1 9.1578 -4.0288 3.7844 40 1 9.2502 -2.5785 4.8198 41 1 10.6599 -4.9224 5.3253 42 1 11.2081 -3.3031 5.8694 43 1 12.6639 -5.1449 2.4343 44 1 15.4043 -3.7547 2.1690 45 1 12.3392 -1.8208 3.7491 46 1 12.3699 -2.7433 2.2163 47 1 1.6672 -2.1273 -0.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326153831.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:55 Heat of formation + Delta-G solvation = -86.425067 kcal Electronic energy + Delta-G solvation = -29488.565737 eV Core-core repulsion = 25250.138191 eV Total energy + Delta-G solvation = -4238.427547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.75237 -40.23380 -38.45843 -37.14200 -35.95295 -34.39173 -33.88371 -32.63492 -32.23979 -30.70409 -30.19876 -27.91161 -27.20820 -25.78857 -24.57878 -23.79405 -22.88505 -21.68045 -21.45702 -19.78004 -19.42685 -17.35196 -17.19115 -17.09805 -16.68892 -16.20552 -15.83867 -15.56882 -15.38302 -15.15081 -14.93553 -14.63432 -14.47016 -14.09511 -13.83806 -13.56510 -13.21275 -13.20394 -13.01638 -12.93830 -12.89868 -12.76553 -12.24351 -12.11563 -11.96621 -11.67954 -11.64852 -11.48331 -11.07133 -11.05611 -10.76750 -10.55274 -10.45154 -10.18967 -10.17317 -9.78688 -9.36643 -9.19530 -9.16218 -9.07782 -8.69975 -8.38716 -7.88052 -6.28993 -4.38414 0.67487 0.89406 1.84694 2.66590 3.19883 3.28847 3.32534 3.36363 3.65048 3.81453 3.99271 4.26261 4.31462 4.38667 4.48152 4.57966 4.68572 4.82103 4.84910 4.98349 4.98992 5.09253 5.11510 5.29433 5.36313 5.50950 5.51895 5.62542 5.75065 5.81344 5.81804 5.85798 5.86493 6.08246 6.22501 6.31835 6.38219 6.53911 6.75100 6.81918 6.86700 7.18741 7.27320 7.34058 7.62929 7.73188 7.91437 8.02400 8.08625 8.48206 8.66215 9.29358 9.37924 10.78250 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.033558 B = 0.001736 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.169138 B =16126.716794 C =16500.719949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.144 4.144 3 C -0.076 4.076 4 C -0.162 4.162 5 C 0.128 3.872 6 C -0.082 4.082 7 C 0.129 3.871 8 N -0.709 5.709 9 C 0.510 3.490 10 O -0.516 6.516 11 C 0.508 3.492 12 O -0.539 6.539 13 N -0.575 5.575 14 C 0.111 3.889 15 C -0.121 4.121 16 C 0.248 3.752 17 O -0.581 6.581 18 C -0.536 4.536 19 H 0.069 0.931 20 C 0.071 3.929 21 N -0.893 5.893 22 Si 0.904 3.096 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.092 3.908 27 N -0.474 5.474 28 C 0.104 3.896 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.411 0.589 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.381 0.619 44 H 0.270 0.730 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.169 10.441 -6.205 27.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.146 4.146 3 C -0.101 4.101 4 C -0.182 4.182 5 C -0.010 4.010 6 C -0.120 4.120 7 C 0.005 3.995 8 N -0.364 5.364 9 C 0.291 3.709 10 O -0.390 6.390 11 C 0.290 3.710 12 O -0.418 6.418 13 N -0.307 5.307 14 C -0.011 4.011 15 C -0.159 4.159 16 C 0.207 3.793 17 O -0.389 6.389 18 C -0.574 4.574 19 H 0.087 0.913 20 C -0.133 4.133 21 N -0.532 5.532 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.029 4.029 27 N -0.183 5.183 28 C -0.053 4.053 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.247 0.753 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.230 0.770 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.109 0.891 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -24.264 9.432 -5.826 26.677 hybrid contribution 1.081 1.307 -0.379 1.738 sum -23.183 10.739 -6.205 26.293 Atomic orbital electron populations 1.20722 0.90146 1.03239 1.02619 1.20973 0.97697 0.94305 1.01634 1.21494 0.93974 0.98245 0.96427 1.21993 0.95218 0.98932 1.02035 1.20962 0.95800 0.88637 0.95609 1.20725 0.89429 1.01814 1.00022 1.21280 0.78942 1.01466 0.97808 1.45718 1.07316 1.52731 1.30627 1.20395 0.89146 0.79396 0.81923 1.90732 1.68565 1.43331 1.36403 1.19554 0.87433 0.81336 0.82629 1.90720 1.68081 1.45996 1.37040 1.48721 1.10173 1.46251 1.25532 1.22186 0.95723 0.95252 0.87949 1.22710 0.94804 1.00516 0.97911 1.19652 0.92016 0.81531 0.86101 1.86135 1.59663 1.46534 1.46584 1.21507 0.89974 1.51934 0.94010 0.91318 1.25091 0.99856 0.93316 0.95008 1.69723 1.28823 1.49414 1.05258 0.86334 0.82840 0.77737 0.79914 1.19552 1.20748 1.20800 1.23476 0.75116 1.00770 1.03505 1.67480 1.08279 1.30929 1.11575 1.22692 0.89597 0.97617 0.95425 0.90880 0.91041 0.91327 0.84808 0.84572 0.89311 0.88861 0.89870 0.91322 0.75256 0.91145 0.91740 0.90511 0.90346 0.76956 0.92029 0.91455 0.89105 0.82682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.44 10.04 36.00 0.36 -0.08 16 2 C -0.14 -0.97 5.90 -104.48 -0.62 -1.59 16 3 C -0.08 -0.49 9.86 -39.27 -0.39 -0.88 16 4 C -0.16 -1.18 9.71 -39.44 -0.38 -1.56 16 5 C 0.13 1.17 6.17 -82.59 -0.51 0.66 16 6 C -0.08 -0.68 5.73 -27.88 -0.16 -0.84 16 7 C 0.13 1.46 5.53 -4.04 -0.02 1.43 16 8 N -0.71 -9.47 5.55 -60.73 -0.34 -9.81 16 9 C 0.51 8.91 7.86 -11.59 -0.09 8.82 16 10 O -0.52 -9.79 14.15 5.50 0.08 -9.71 16 11 C 0.51 10.40 7.92 -11.59 -0.09 10.30 16 12 O -0.54 -11.87 16.73 5.49 0.09 -11.78 16 13 N -0.57 -12.41 3.34 -170.81 -0.57 -12.98 16 14 C 0.11 2.21 5.50 -2.92 -0.02 2.19 16 15 C -0.12 -2.51 6.13 -24.90 -0.15 -2.67 16 16 C 0.25 6.04 0.87 -89.63 -0.08 5.96 16 17 O -0.58 -14.91 13.16 -35.23 -0.46 -15.37 16 18 C -0.54 -13.90 8.27 -34.44 -0.28 -14.18 16 19 H 0.07 1.75 7.79 -52.48 -0.41 1.34 16 20 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 21 N -0.89 -23.60 10.69 55.43 0.59 -23.01 16 22 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 26 C 0.09 2.21 5.38 -2.53 -0.01 2.19 16 27 N -0.47 -4.99 9.89 -9.47 -0.09 -5.08 16 28 C 0.10 0.87 10.86 -17.55 -0.19 0.68 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 31 H 0.07 0.22 8.10 -51.93 -0.42 -0.20 16 32 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 33 H 0.14 0.69 7.95 -52.49 -0.42 0.27 16 34 H 0.09 0.55 7.87 -51.93 -0.41 0.14 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.08 7.95 -51.93 -0.41 0.67 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.41 4.88 7.94 -40.82 -0.32 4.55 16 39 H 0.07 1.41 7.59 -51.93 -0.39 1.02 16 40 H 0.06 1.17 7.71 -51.93 -0.40 0.77 16 41 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 43 H 0.38 9.93 7.56 45.56 0.34 10.27 16 44 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 45 H 0.07 1.64 8.03 -51.93 -0.42 1.22 16 46 H 0.09 2.41 7.32 -51.93 -0.38 2.03 16 47 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 394.31 15.07 5.94 5.94 Total: -1.00 -31.37 394.31 -8.66 -40.03 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -6.15 Total: 14.37 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: -2.73 Total: 12.18 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.41 Total: -50.87 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -0.29 Total: -36.86 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.37 -8.66 -40.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326153831.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.395 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds