Wall clock time and date at job start Wed Apr 1 2020 04:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38683 * 120.41826 * 2 1 4 4 C 1.38628 * 118.42149 * 180.02562 * 3 2 1 5 5 C 1.38228 * 119.15847 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.61324 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.46958 * 125.00339 * 6 5 4 8 8 N 1.46497 * 109.47076 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00160 * 179.97438 * 8 7 6 10 10 O 1.21348 * 119.99666 * 0.02562 * 9 8 7 11 11 C 1.49448 * 120.00247 * 180.02562 * 9 8 7 12 12 O 1.21355 * 120.00006 * 359.97438 * 11 9 8 13 13 N 1.34774 * 120.00247 * 179.97438 * 11 9 8 14 14 C 1.47290 * 125.79121 * 359.97438 * 13 11 9 15 15 C 1.54325 * 107.30599 * 178.92556 * 14 13 11 16 16 C 1.55154 * 102.94303 * 337.81911 * 15 14 13 17 17 O 1.42902 * 111.00280 * 277.42723 * 16 15 14 18 18 C 1.50693 * 111.03939 * 153.59058 * 16 15 14 19 19 H 1.08004 * 120.00401 * 6.33015 * 18 16 15 20 20 C 1.37876 * 120.00383 * 186.33190 * 18 16 15 21 21 N 1.31512 * 119.99646 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 120.00223 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47147 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.46990 * 119.99902 * 22 20 18 25 25 H 1.48499 * 109.46928 * 239.99675 * 22 20 18 26 26 C 1.47425 * 125.65138 * 179.97438 * 13 11 9 27 27 N 1.31850 * 120.76966 * 0.25605 * 5 4 3 28 28 C 1.31889 * 121.72388 * 359.47536 * 27 5 4 29 29 H 1.09004 * 109.46583 * 89.99844 * 1 2 3 30 30 H 1.08993 * 109.46694 * 209.99855 * 1 2 3 31 31 H 1.09000 * 109.47047 * 330.00078 * 1 2 3 32 32 H 1.07998 * 120.78527 * 359.97438 * 3 2 1 33 33 H 1.07996 * 120.41828 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.47208 * 5.00096 * 6 5 4 35 35 H 1.08999 * 109.46824 * 244.99901 * 6 5 4 36 36 H 1.08998 * 109.46939 * 59.99544 * 7 6 5 37 37 H 1.09001 * 109.46501 * 299.99626 * 7 6 5 38 38 H 0.97005 * 120.00064 * 359.97438 * 8 7 6 39 39 H 1.09004 * 109.85762 * 59.50172 * 14 13 11 40 40 H 1.08995 * 110.00297 * 298.43119 * 14 13 11 41 41 H 1.09002 * 110.72180 * 219.45147 * 15 14 13 42 42 H 1.08997 * 110.72163 * 96.18354 * 15 14 13 43 43 H 0.96703 * 114.00194 * 173.65090 * 17 16 15 44 44 H 0.97010 * 119.99834 * 180.02562 * 21 20 18 45 45 H 1.09002 * 110.36696 * 85.25946 * 26 13 11 46 46 H 1.08995 * 110.36608 * 323.04783 * 26 13 11 47 47 H 1.08001 * 119.62343 * 180.27060 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1476 -0.0005 5 6 4.2256 -0.0822 -0.0016 6 6 5.7313 -0.1467 -0.0028 7 6 6.2063 -0.9958 1.1781 8 7 7.6699 -1.0590 1.1766 9 6 8.3153 -1.7568 2.1321 10 8 7.6839 -2.3332 2.9933 11 6 9.8084 -1.8208 2.1309 12 8 10.4397 -1.2448 1.2693 13 7 10.4538 -2.5182 3.0867 14 6 9.8183 -3.2614 4.1881 15 6 10.9472 -3.9195 5.0092 16 6 12.1231 -3.9781 3.9988 17 8 12.0077 -5.1175 3.1440 18 6 13.4503 -3.9741 4.7125 19 1 13.4842 -4.0372 5.7901 20 6 14.6215 -3.8899 3.9898 21 7 14.5803 -3.8136 2.6775 22 14 16.2667 -3.8858 4.8744 23 1 16.0414 -3.9810 6.3391 24 1 17.0754 -5.0458 4.4211 25 1 16.9912 -2.6267 4.5663 26 6 11.9160 -2.6646 3.2041 27 7 3.5256 -1.1995 -0.0072 28 6 2.2067 -1.1916 -0.0016 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6889 2.1424 -0.0004 33 1 4.1735 2.0593 -0.0001 34 1 6.1382 0.8606 0.0870 35 1 6.0749 -0.5957 -0.9346 36 1 5.7994 -2.0030 1.0883 37 1 5.8626 -0.5467 2.1099 38 1 8.1746 -0.5985 0.4879 39 1 9.1578 -4.0288 3.7844 40 1 9.2502 -2.5785 4.8198 41 1 10.6599 -4.9224 5.3253 42 1 11.2081 -3.3031 5.8694 43 1 12.6639 -5.1449 2.4343 44 1 15.4043 -3.7547 2.1690 45 1 12.3392 -1.8208 3.7491 46 1 12.3699 -2.7433 2.2163 47 1 1.6672 -2.1273 -0.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326153831.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:54 Heat of formation + Delta-G solvation = -109.435445 kcal Electronic energy + Delta-G solvation = -29489.563542 eV Core-core repulsion = 25250.138191 eV Total energy + Delta-G solvation = -4239.425352 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.82870 -41.25023 -40.03136 -38.87810 -37.01029 -36.02658 -34.75951 -34.24319 -33.25825 -31.95917 -31.41986 -29.70775 -28.15423 -27.30156 -25.66423 -24.81304 -23.93023 -22.91848 -22.24087 -21.55758 -20.91120 -19.16014 -18.77120 -18.10194 -17.70392 -17.33017 -17.10900 -17.02845 -16.60985 -16.29507 -16.17489 -15.96136 -15.63718 -15.29483 -14.96973 -14.85083 -14.67907 -14.43377 -14.07933 -13.96557 -13.74875 -13.71572 -13.52342 -13.32088 -13.26161 -12.86343 -12.85975 -12.71116 -12.53769 -12.52228 -12.36638 -12.35774 -12.19745 -12.10332 -11.22144 -10.77773 -10.70800 -10.60412 -10.43669 -10.32030 -10.28893 -9.68491 -9.65351 -8.25156 -6.42059 0.12379 0.32723 0.36610 1.25271 1.43099 1.46469 1.57159 2.10865 2.37298 2.48795 2.79819 3.00910 3.24608 3.40242 3.73436 3.77016 3.92666 3.97058 4.05176 4.06256 4.11027 4.14525 4.19496 4.31565 4.41589 4.58535 4.65461 4.72561 4.75514 4.82909 4.83995 4.92175 4.96346 4.97096 5.05488 5.11581 5.15509 5.21789 5.23073 5.32961 5.38074 5.43363 5.74613 5.81443 5.96611 6.06931 6.36215 6.61680 6.68001 6.90989 7.05265 7.26690 7.34904 8.80826 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.033558 B = 0.001736 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.169138 B =16126.716794 C =16500.719949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.143 4.143 3 C -0.081 4.081 4 C -0.162 4.162 5 C 0.104 3.896 6 C -0.072 4.072 7 C 0.134 3.866 8 N -0.687 5.687 9 C 0.516 3.484 10 O -0.532 6.532 11 C 0.504 3.496 12 O -0.559 6.559 13 N -0.584 5.584 14 C 0.119 3.881 15 C -0.115 4.115 16 C 0.232 3.768 17 O -0.588 6.588 18 C -0.555 4.555 19 H 0.070 0.930 20 C 0.028 3.972 21 N -0.915 5.915 22 Si 0.966 3.034 23 H -0.265 1.265 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.107 3.893 27 N -0.509 5.509 28 C 0.082 3.918 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.420 0.580 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.374 0.626 44 H 0.270 0.730 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.741 11.978 -5.803 28.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.145 4.145 3 C -0.107 4.107 4 C -0.181 4.181 5 C -0.034 4.034 6 C -0.110 4.110 7 C 0.011 3.989 8 N -0.341 5.341 9 C 0.296 3.704 10 O -0.409 6.409 11 C 0.287 3.713 12 O -0.440 6.440 13 N -0.316 5.316 14 C -0.003 4.003 15 C -0.153 4.153 16 C 0.191 3.809 17 O -0.395 6.395 18 C -0.593 4.593 19 H 0.088 0.912 20 C -0.173 4.173 21 N -0.554 5.554 22 Si 0.791 3.209 23 H -0.189 1.189 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.015 4.015 27 N -0.218 5.218 28 C -0.075 4.075 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.179 0.821 33 H 0.177 0.823 34 H 0.132 0.868 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.258 0.742 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.112 0.888 43 H 0.223 0.777 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -25.878 10.986 -5.441 28.635 hybrid contribution 1.480 0.857 -0.572 1.804 sum -24.397 11.843 -6.014 27.779 Atomic orbital electron populations 1.20777 0.88216 1.04112 1.03427 1.21290 0.99131 0.93892 1.00159 1.21893 0.93937 0.99279 0.95582 1.22276 0.95909 0.99013 1.00931 1.21112 0.95938 0.89227 0.97095 1.20691 0.89424 1.02480 0.98444 1.21347 0.76967 1.01241 0.99375 1.45675 1.08331 1.50858 1.29259 1.19818 0.87503 0.80245 0.82844 1.90726 1.68206 1.44539 1.37422 1.20167 0.88958 0.80395 0.81787 1.90698 1.69012 1.46628 1.37615 1.48768 1.09297 1.46953 1.26555 1.22195 0.95219 0.95375 0.87478 1.22723 0.93464 1.01521 0.97565 1.19888 0.93214 0.81102 0.86664 1.86129 1.59427 1.47385 1.46592 1.21786 0.90998 1.52266 0.94257 0.91164 1.25814 1.02932 0.92924 0.95626 1.69830 1.29497 1.49715 1.06337 0.85380 0.78900 0.77507 0.79077 1.18881 1.20690 1.20662 1.23051 0.76680 1.00383 1.01395 1.67417 1.09485 1.32170 1.12766 1.22992 0.89323 0.98969 0.96241 0.89971 0.90533 0.90127 0.82137 0.82260 0.86753 0.88695 0.91643 0.91406 0.74183 0.91428 0.89704 0.89672 0.88810 0.77708 0.92024 0.92449 0.92274 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.04 71.24 0.72 0.08 16 2 C -0.14 -1.70 5.90 -19.77 -0.12 -1.82 16 3 C -0.08 -0.86 9.86 22.47 0.22 -0.64 16 4 C -0.16 -2.00 9.71 22.36 0.22 -1.78 16 5 C 0.10 1.79 6.17 42.56 0.26 2.05 16 6 C -0.07 -1.09 5.73 29.85 0.17 -0.92 16 7 C 0.13 2.91 5.53 86.38 0.48 3.38 16 8 N -0.69 -17.67 5.55 -464.41 -2.58 -20.24 16 9 C 0.52 17.70 7.86 87.27 0.69 18.39 16 10 O -0.53 -19.82 14.15 -3.24 -0.05 -19.86 16 11 C 0.50 20.62 7.92 87.27 0.69 21.32 16 12 O -0.56 -24.84 16.73 -3.26 -0.05 -24.89 16 13 N -0.58 -25.31 3.34 -812.69 -2.71 -28.02 16 14 C 0.12 4.62 5.50 86.68 0.48 5.10 16 15 C -0.12 -4.66 6.13 31.78 0.19 -4.46 16 16 C 0.23 11.39 0.87 -10.15 -0.01 11.38 16 17 O -0.59 -30.70 13.16 -148.98 -1.96 -32.67 16 18 C -0.55 -28.82 8.27 25.60 0.21 -28.61 16 19 H 0.07 3.54 7.79 -2.91 -0.02 3.52 16 20 C 0.03 1.46 5.29 84.65 0.45 1.91 16 21 N -0.91 -49.16 10.69 21.45 0.23 -48.93 16 22 Si 0.97 41.41 29.54 68.60 2.03 43.44 16 23 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 26 C 0.11 5.24 5.38 86.85 0.47 5.71 16 27 N -0.51 -10.61 9.89 -183.87 -1.82 -12.43 16 28 C 0.08 1.33 10.86 84.67 0.92 2.25 16 29 H 0.08 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.08 0.38 8.09 -2.39 -0.02 0.36 16 31 H 0.08 0.30 8.10 -2.39 -0.02 0.28 16 32 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 33 H 0.16 1.10 7.95 -2.91 -0.02 1.08 16 34 H 0.11 1.12 7.87 -2.39 -0.02 1.10 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.70 7.95 -2.39 -0.02 1.68 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.42 9.43 7.94 -92.70 -0.74 8.69 16 39 H 0.07 2.66 7.59 -2.38 -0.02 2.65 16 40 H 0.08 2.95 7.71 -2.39 -0.02 2.94 16 41 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 42 H 0.09 3.48 8.03 -2.39 -0.02 3.46 16 43 H 0.37 20.17 7.56 -74.06 -0.56 19.61 16 44 H 0.27 13.87 8.31 -92.70 -0.77 13.10 16 45 H 0.06 2.87 8.03 -2.39 -0.02 2.85 16 46 H 0.06 3.25 7.32 -2.39 -0.02 3.23 16 47 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -68.04 394.31 -1.16 -69.20 By element: Atomic # 1 Polarization: 41.37 SS G_CDS: -0.29 Total: 41.09 kcal Atomic # 6 Polarization: 27.28 SS G_CDS: 6.03 Total: 33.32 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -6.88 Total: -109.63 kcal Atomic # 8 Polarization: -75.36 SS G_CDS: -2.06 Total: -77.42 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -68.04 -1.16 -69.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326153831.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.235 kcal (2) G-P(sol) polarization free energy of solvation -68.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds