Wall clock time and date at job start Wed Apr 1 2020 05:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35135 * 125.61599 * 2 1 4 4 C 1.40366 * 107.11367 * 180.02562 * 3 2 1 5 5 C 1.36548 * 106.70925 * 0.02562 * 4 3 2 6 6 C 1.46660 * 125.98883 * 179.97438 * 5 4 3 7 7 O 1.21695 * 119.99876 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99580 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99305 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46784 * 180.02562 * 9 8 6 11 11 C 1.29823 * 118.55903 * 94.99514 * 10 9 8 12 12 C 1.50140 * 123.28749 * 180.39016 * 11 10 9 13 13 N 1.46846 * 110.27590 * 342.93553 * 12 11 10 14 14 C 1.46899 * 111.00302 * 174.31282 * 13 12 11 15 15 C 1.50698 * 109.46987 * 66.03980 * 14 13 12 16 16 O 1.21293 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99773 * 179.72591 * 17 15 14 19 19 H 1.08002 * 119.99671 * 0.27660 * 18 17 15 20 20 C 1.38950 * 120.00030 * 180.27703 * 18 17 15 21 21 N 1.31414 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47425 * 90.00231 * 22 20 18 24 24 H 1.48499 * 109.47218 * 210.00087 * 22 20 18 25 25 H 1.48505 * 109.47256 * 330.00093 * 22 20 18 26 26 C 1.47239 * 110.20601 * 50.91850 * 13 12 11 27 27 C 1.50311 * 118.54939 * 275.02136 * 10 9 8 28 28 O 1.33929 * 125.61624 * 180.33217 * 2 1 3 29 29 H 1.08998 * 109.47123 * 89.99200 * 1 2 3 30 30 H 1.08995 * 109.47251 * 209.99397 * 1 2 3 31 31 H 1.08996 * 109.47161 * 329.99871 * 1 2 3 32 32 H 1.07992 * 126.44197 * 0.04235 * 3 2 1 33 33 H 1.07992 * 126.64676 * 179.97438 * 4 3 2 34 34 H 0.96995 * 120.00499 * 0.02562 * 8 6 5 35 35 H 1.08995 * 109.47150 * 60.00098 * 9 8 6 36 36 H 1.09003 * 109.47146 * 299.99438 * 9 8 6 37 37 H 1.08001 * 118.35167 * 0.37934 * 11 10 9 38 38 H 1.08998 * 109.34082 * 222.68723 * 12 11 10 39 39 H 1.09003 * 109.33334 * 103.17518 * 12 11 10 40 40 H 1.09003 * 109.46477 * 306.04469 * 14 13 12 41 41 H 1.08993 * 109.47002 * 186.04796 * 14 13 12 42 42 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 43 43 H 0.96999 * 119.99863 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.63934 * 50.89479 * 26 13 12 45 45 H 1.08999 * 109.63492 * 171.50188 * 26 13 12 46 46 H 1.09006 * 109.42858 * 283.57665 * 27 10 9 47 47 H 1.08998 * 109.43146 * 43.42197 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0986 0.0000 4 6 3.6251 0.6531 -0.0006 5 6 3.5823 -0.7117 -0.0015 6 6 4.7415 -1.6102 -0.0029 7 8 5.8680 -1.1500 -0.0038 8 7 4.5589 -2.9456 -0.0032 9 6 5.7168 -3.8431 -0.0040 10 6 5.2433 -5.2738 -0.0049 11 6 5.1423 -5.8935 -1.1412 12 6 4.6744 -7.3146 -1.2660 13 7 4.7502 -7.9915 0.0349 14 6 4.1709 -9.3394 -0.0384 15 6 5.0161 -10.2010 -0.9408 16 8 6.0041 -9.7379 -1.4704 17 7 4.6745 -11.4865 -1.1585 18 6 5.4403 -12.2689 -1.9839 19 1 6.3196 -11.8562 -2.4561 20 6 5.0850 -13.5925 -2.2129 21 7 4.0148 -14.0943 -1.6388 22 14 6.1287 -14.6586 -3.3370 23 1 7.1799 -15.3387 -2.5386 24 1 5.2689 -15.6764 -3.9926 25 1 6.7671 -13.8081 -4.3735 26 6 4.0799 -7.1844 1.0680 27 6 4.9082 -5.9203 1.3101 28 8 2.2869 -1.0887 -0.0063 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8899 0.5138 32 1 1.9613 2.1260 0.0006 33 1 4.5113 1.2702 -0.0011 34 1 3.6609 -3.3123 -0.0029 35 1 6.3192 -3.6598 0.8857 36 1 6.3183 -3.6594 -0.8943 37 1 5.4081 -5.3599 -2.0417 38 1 5.3042 -7.8403 -1.9837 39 1 3.6430 -7.3253 -1.6187 40 1 3.1586 -9.2785 -0.4379 41 1 4.1420 -9.7772 0.9594 42 1 3.8846 -11.8570 -0.7346 43 1 3.7670 -15.0185 -1.7984 44 1 3.0822 -6.9081 0.7269 45 1 4.0084 -7.7583 1.9919 46 1 5.8295 -6.1847 1.8293 47 1 4.3356 -5.2229 1.9215 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333283221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:37 Heat of formation + Delta-G solvation = -34.464575 kcal Electronic energy + Delta-G solvation = -29039.555839 eV Core-core repulsion = 24803.381468 eV Total energy + Delta-G solvation = -4236.174371 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.09531 -39.92540 -39.17421 -37.75932 -35.61228 -33.99638 -33.73837 -33.01605 -32.37523 -31.24085 -30.77926 -28.94812 -27.51611 -25.84317 -24.24706 -23.61851 -22.65147 -22.01488 -21.77897 -20.57149 -19.24151 -18.94146 -17.89744 -17.44023 -16.89798 -16.37937 -16.17525 -16.00376 -15.49014 -15.32555 -14.85248 -14.69366 -14.40854 -14.08314 -13.86613 -13.78642 -13.72601 -13.60935 -13.45531 -13.38735 -13.38292 -12.91280 -12.69451 -12.41440 -12.29448 -12.20173 -11.88660 -11.50735 -11.36579 -11.11211 -10.89500 -10.68690 -10.45535 -10.43398 -10.39817 -10.22312 -9.50246 -9.46231 -8.92972 -8.86817 -8.48578 -7.99213 -7.85693 -6.42616 -3.83385 0.67040 1.91069 1.91859 2.26503 2.87219 3.10463 3.17380 3.26182 3.31784 3.88437 3.96919 4.15055 4.23614 4.45071 4.50081 4.55027 4.70011 4.83560 4.90739 5.00682 5.12200 5.20350 5.23124 5.23549 5.30116 5.35285 5.43461 5.50194 5.51732 5.54111 5.61752 5.67289 5.77515 5.88117 5.94045 5.95718 6.01144 6.12127 6.22847 6.31258 6.41015 6.46800 6.88369 7.15830 7.29456 7.32679 7.54530 7.76191 8.05588 8.60873 9.17367 9.53469 10.05229 10.75077 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022433 B = 0.001655 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.853274 B =16918.915400 C =17394.318685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.020 3.980 3 C -0.225 4.225 4 C -0.116 4.116 5 C -0.082 4.082 6 C 0.602 3.398 7 O -0.522 6.522 8 N -0.713 5.713 9 C 0.158 3.842 10 C -0.158 4.158 11 C -0.103 4.103 12 C 0.072 3.928 13 N -0.509 5.509 14 C 0.045 3.955 15 C 0.443 3.557 16 O -0.577 6.577 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.050 3.950 27 C -0.071 4.071 28 O -0.163 6.163 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.406 0.594 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.041 0.959 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.033 0.967 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.983 26.430 6.210 28.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.032 4.032 3 C -0.244 4.244 4 C -0.137 4.137 5 C -0.133 4.133 6 C 0.388 3.612 7 O -0.400 6.400 8 N -0.363 5.363 9 C 0.036 3.964 10 C -0.159 4.159 11 C -0.123 4.123 12 C -0.055 4.055 13 N -0.233 5.233 14 C -0.087 4.087 15 C 0.228 3.772 16 O -0.462 6.462 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.078 4.078 27 C -0.108 4.108 28 O -0.059 6.059 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.174 0.826 33 H 0.178 0.822 34 H 0.241 0.759 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.148 26.480 5.963 28.339 hybrid contribution -1.252 -0.775 -0.499 1.555 sum -9.400 25.704 5.464 27.909 Atomic orbital electron populations 1.20437 0.84451 1.04612 1.04109 1.22860 0.94343 0.84065 1.01978 1.21608 0.92331 0.99869 1.10573 1.21964 0.98678 0.92943 1.00089 1.22057 0.81862 0.94665 1.14752 1.16559 0.86037 0.81563 0.77075 1.90896 1.22046 1.76152 1.50892 1.46046 1.11055 1.05110 1.74119 1.20422 0.87158 0.85715 1.03128 1.20816 1.04846 0.94323 0.95896 1.22370 0.96834 0.95768 0.97325 1.21261 0.99836 0.91565 0.92808 1.62038 1.54670 1.01038 1.05550 1.21908 0.96058 0.89697 1.00999 1.19737 0.87955 0.83204 0.86259 1.90482 1.28824 1.73040 1.53812 1.41868 1.26459 1.08904 1.42829 1.19703 1.08379 0.92122 1.22611 0.87894 1.25258 0.96908 0.97396 0.98380 1.69613 1.24858 1.15867 1.43996 0.85858 0.79194 0.79319 0.79921 1.20396 1.20967 1.19442 1.22218 0.94984 0.94502 0.96139 1.20398 1.00710 0.95284 0.94435 1.84006 1.15983 1.35020 1.70868 0.89455 0.90029 0.88862 0.82606 0.82185 0.75918 0.90464 0.90595 0.87087 0.86392 0.94134 0.93441 0.89170 0.77499 0.91892 0.94883 0.90375 0.89972 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.41 36.01 0.37 0.10 16 2 C 0.02 0.14 7.31 -35.41 -0.26 -0.11 16 3 C -0.22 -1.64 10.77 -39.89 -0.43 -2.07 16 4 C -0.12 -1.08 10.62 -39.39 -0.42 -1.50 16 5 C -0.08 -0.86 7.13 -36.79 -0.26 -1.12 16 6 C 0.60 7.14 7.79 -12.86 -0.10 7.04 16 7 O -0.52 -7.72 16.86 5.19 0.09 -7.63 16 8 N -0.71 -7.22 5.54 -62.80 -0.35 -7.57 16 9 C 0.16 1.70 5.72 -5.19 -0.03 1.67 16 10 C -0.16 -1.82 5.26 -100.92 -0.53 -2.35 16 11 C -0.10 -1.34 9.50 -35.97 -0.34 -1.69 16 12 C 0.07 1.14 5.22 -5.28 -0.03 1.11 16 13 N -0.51 -8.26 4.46 -237.58 -1.06 -9.32 16 14 C 0.04 0.78 5.44 -4.98 -0.03 0.75 16 15 C 0.44 10.25 7.54 -10.99 -0.08 10.17 16 16 O -0.58 -15.26 13.88 5.55 0.08 -15.19 16 17 N -0.56 -14.08 5.29 -10.96 -0.06 -14.13 16 18 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 22 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 C 0.05 0.61 5.59 -3.61 -0.02 0.59 16 27 C -0.07 -0.78 6.04 -28.04 -0.17 -0.95 16 28 O -0.16 -1.52 10.40 4.99 0.05 -1.47 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.41 3.54 8.22 -40.82 -0.34 3.21 16 35 H 0.08 0.84 8.13 -51.93 -0.42 0.42 16 36 H 0.08 0.86 7.85 -51.93 -0.41 0.45 16 37 H 0.11 1.31 7.81 -52.49 -0.41 0.90 16 38 H 0.12 2.28 5.98 -51.93 -0.31 1.97 16 39 H 0.04 0.60 8.06 -51.93 -0.42 0.18 16 40 H 0.05 0.75 8.06 -51.93 -0.42 0.33 16 41 H 0.09 1.41 7.94 -51.93 -0.41 1.00 16 42 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.03 0.38 8.08 -51.93 -0.42 -0.04 16 45 H 0.08 0.88 7.92 -51.93 -0.41 0.46 16 46 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 398.10 15.07 6.00 6.00 Total: -1.00 -33.28 398.10 -8.87 -42.15 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -6.76 Total: 11.09 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -2.56 Total: 3.75 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.74 Total: -54.62 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: 0.22 Total: -24.29 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.28 -8.87 -42.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333283221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.687 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds