Wall clock time and date at job start Wed Apr 1 2020 05:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35135 * 125.61599 * 2 1 4 4 C 1.40366 * 107.11367 * 180.02562 * 3 2 1 5 5 C 1.36548 * 106.70925 * 0.02562 * 4 3 2 6 6 C 1.46660 * 125.98883 * 179.97438 * 5 4 3 7 7 O 1.21695 * 119.99876 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99580 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99305 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46784 * 180.02562 * 9 8 6 11 11 C 1.29823 * 118.55903 * 94.99514 * 10 9 8 12 12 C 1.50140 * 123.28749 * 180.39016 * 11 10 9 13 13 N 1.46846 * 110.27590 * 342.93553 * 12 11 10 14 14 C 1.46899 * 111.00302 * 174.31282 * 13 12 11 15 15 C 1.50698 * 109.46987 * 66.03980 * 14 13 12 16 16 O 1.21293 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99773 * 179.72591 * 17 15 14 19 19 H 1.08002 * 119.99671 * 0.27660 * 18 17 15 20 20 C 1.38950 * 120.00030 * 180.27703 * 18 17 15 21 21 N 1.31414 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47425 * 90.00231 * 22 20 18 24 24 H 1.48499 * 109.47218 * 210.00087 * 22 20 18 25 25 H 1.48505 * 109.47256 * 330.00093 * 22 20 18 26 26 C 1.47239 * 110.20601 * 50.91850 * 13 12 11 27 27 C 1.50311 * 118.54939 * 275.02136 * 10 9 8 28 28 O 1.33929 * 125.61624 * 180.33217 * 2 1 3 29 29 H 1.08998 * 109.47123 * 89.99200 * 1 2 3 30 30 H 1.08995 * 109.47251 * 209.99397 * 1 2 3 31 31 H 1.08996 * 109.47161 * 329.99871 * 1 2 3 32 32 H 1.07992 * 126.44197 * 0.04235 * 3 2 1 33 33 H 1.07992 * 126.64676 * 179.97438 * 4 3 2 34 34 H 0.96995 * 120.00499 * 0.02562 * 8 6 5 35 35 H 1.08995 * 109.47150 * 60.00098 * 9 8 6 36 36 H 1.09003 * 109.47146 * 299.99438 * 9 8 6 37 37 H 1.08001 * 118.35167 * 0.37934 * 11 10 9 38 38 H 1.08998 * 109.34082 * 222.68723 * 12 11 10 39 39 H 1.09003 * 109.33334 * 103.17518 * 12 11 10 40 40 H 1.09003 * 109.46477 * 306.04469 * 14 13 12 41 41 H 1.08993 * 109.47002 * 186.04796 * 14 13 12 42 42 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 43 43 H 0.96999 * 119.99863 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.63934 * 50.89479 * 26 13 12 45 45 H 1.08999 * 109.63492 * 171.50188 * 26 13 12 46 46 H 1.09006 * 109.42858 * 283.57665 * 27 10 9 47 47 H 1.08998 * 109.43146 * 43.42197 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0986 0.0000 4 6 3.6251 0.6531 -0.0006 5 6 3.5823 -0.7117 -0.0015 6 6 4.7415 -1.6102 -0.0029 7 8 5.8680 -1.1500 -0.0038 8 7 4.5589 -2.9456 -0.0032 9 6 5.7168 -3.8431 -0.0040 10 6 5.2433 -5.2738 -0.0049 11 6 5.1423 -5.8935 -1.1412 12 6 4.6744 -7.3146 -1.2660 13 7 4.7502 -7.9915 0.0349 14 6 4.1709 -9.3394 -0.0384 15 6 5.0161 -10.2010 -0.9408 16 8 6.0041 -9.7379 -1.4704 17 7 4.6745 -11.4865 -1.1585 18 6 5.4403 -12.2689 -1.9839 19 1 6.3196 -11.8562 -2.4561 20 6 5.0850 -13.5925 -2.2129 21 7 4.0148 -14.0943 -1.6388 22 14 6.1287 -14.6586 -3.3370 23 1 7.1799 -15.3387 -2.5386 24 1 5.2689 -15.6764 -3.9926 25 1 6.7671 -13.8081 -4.3735 26 6 4.0799 -7.1844 1.0680 27 6 4.9082 -5.9203 1.3101 28 8 2.2869 -1.0887 -0.0063 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8899 0.5138 32 1 1.9613 2.1260 0.0006 33 1 4.5113 1.2702 -0.0011 34 1 3.6609 -3.3123 -0.0029 35 1 6.3192 -3.6598 0.8857 36 1 6.3183 -3.6594 -0.8943 37 1 5.4081 -5.3599 -2.0417 38 1 5.3042 -7.8403 -1.9837 39 1 3.6430 -7.3253 -1.6187 40 1 3.1586 -9.2785 -0.4379 41 1 4.1420 -9.7772 0.9594 42 1 3.8846 -11.8570 -0.7346 43 1 3.7670 -15.0185 -1.7984 44 1 3.0822 -6.9081 0.7269 45 1 4.0084 -7.7583 1.9919 46 1 5.8295 -6.1847 1.8293 47 1 4.3356 -5.2229 1.9215 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333283221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:36 Heat of formation + Delta-G solvation = -58.633799 kcal Electronic energy + Delta-G solvation = -29040.603895 eV Core-core repulsion = 24803.381468 eV Total energy + Delta-G solvation = -4237.222427 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.72967 -40.94686 -40.46858 -39.30035 -36.71714 -35.87479 -34.49875 -34.00551 -33.24566 -32.90778 -31.80676 -30.04026 -28.43810 -27.15785 -25.77243 -24.70458 -23.51849 -22.79855 -22.63515 -21.30074 -21.04798 -19.87967 -19.74122 -18.46700 -17.78531 -17.56961 -17.30475 -16.95557 -16.64135 -16.49716 -16.20143 -15.92066 -15.68754 -15.46762 -15.31943 -15.10609 -14.67621 -14.21771 -14.13556 -14.04278 -13.99310 -13.87487 -13.77472 -13.67666 -13.50838 -13.27931 -13.00788 -12.91870 -12.78972 -12.51365 -12.41237 -12.12444 -12.10954 -11.66061 -11.45879 -11.44163 -11.07348 -10.36124 -10.27509 -10.00640 -9.92364 -9.48889 -9.19047 -8.45746 -5.93990 -0.04721 0.94670 1.31983 1.38040 1.41853 1.54169 1.60188 2.04057 2.06945 2.28847 2.29052 2.77439 3.21178 3.39258 3.51482 3.60018 3.78481 3.88734 3.93534 4.16131 4.26977 4.34869 4.39565 4.42539 4.52281 4.52625 4.56408 4.57518 4.62163 4.65007 4.72565 4.72828 4.76352 4.92820 4.93317 5.06407 5.11586 5.13721 5.21430 5.36488 5.42437 5.43992 5.81213 5.84090 5.95792 6.12404 6.20601 6.35217 6.62380 6.90920 7.14563 7.58278 8.14522 8.71588 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022433 B = 0.001655 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.853274 B =16918.915400 C =17394.318685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.025 3.975 3 C -0.231 4.231 4 C -0.119 4.119 5 C -0.112 4.112 6 C 0.602 3.398 7 O -0.561 6.561 8 N -0.702 5.702 9 C 0.163 3.837 10 C -0.137 4.137 11 C -0.122 4.122 12 C 0.078 3.922 13 N -0.531 5.531 14 C 0.057 3.943 15 C 0.440 3.560 16 O -0.615 6.615 17 N -0.574 5.574 18 C -0.332 4.332 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.274 1.274 26 C 0.050 3.950 27 C -0.071 4.071 28 O -0.171 6.171 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.183 0.817 33 H 0.162 0.838 34 H 0.415 0.585 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.113 0.887 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.048 0.952 45 H 0.094 0.906 46 H 0.078 0.922 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.100 27.613 7.306 31.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.027 4.027 3 C -0.250 4.250 4 C -0.140 4.140 5 C -0.163 4.163 6 C 0.389 3.611 7 O -0.442 6.442 8 N -0.352 5.352 9 C 0.041 3.959 10 C -0.138 4.138 11 C -0.142 4.142 12 C -0.049 4.049 13 N -0.256 5.256 14 C -0.074 4.074 15 C 0.228 3.772 16 O -0.501 6.501 17 N -0.212 5.212 18 C -0.461 4.461 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.077 4.077 27 C -0.108 4.108 28 O -0.067 6.067 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.134 0.866 32 H 0.201 0.799 33 H 0.179 0.821 34 H 0.251 0.749 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.131 0.869 42 H 0.230 0.770 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.112 0.888 46 H 0.097 0.903 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.310 27.654 7.082 30.351 hybrid contribution -0.660 -1.024 -0.804 1.460 sum -10.970 26.629 6.277 29.477 Atomic orbital electron populations 1.20672 0.81571 1.06025 1.05321 1.23704 0.95865 0.83484 0.99691 1.21948 0.91238 1.01331 1.10482 1.22235 0.99937 0.92762 0.99078 1.21798 0.82135 0.94762 1.17597 1.16728 0.86051 0.81934 0.76356 1.90865 1.23578 1.76819 1.52909 1.45900 1.11250 1.04608 1.73446 1.20316 0.87357 0.85292 1.02942 1.20904 1.02738 0.94334 0.95785 1.22252 0.98860 0.94650 0.98394 1.21032 0.99402 0.92479 0.92014 1.61980 1.56031 1.01029 1.06533 1.21780 0.95494 0.89568 1.00539 1.20820 0.87754 0.82926 0.85730 1.90467 1.30742 1.73709 1.55182 1.41931 1.26577 1.09597 1.43094 1.19645 1.08759 0.93360 1.24364 0.90414 1.26002 0.97947 0.97925 0.99363 1.69669 1.25551 1.16400 1.44496 0.84949 0.77874 0.77618 0.78022 1.19739 1.19535 1.19906 1.22347 0.95521 0.94461 0.95380 1.20474 1.00872 0.95310 0.94145 1.83993 1.15582 1.35995 1.71175 0.88163 0.89468 0.86591 0.79941 0.82068 0.74897 0.90227 0.91347 0.86500 0.90825 0.93445 0.91320 0.86883 0.77009 0.91353 0.93330 0.88796 0.90349 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.41 71.24 0.74 0.45 16 2 C 0.03 0.31 7.31 24.97 0.18 0.49 16 3 C -0.23 -2.89 10.77 22.07 0.24 -2.65 16 4 C -0.12 -2.14 10.62 22.39 0.24 -1.90 16 5 C -0.11 -2.29 7.13 24.08 0.17 -2.12 16 6 C 0.60 14.26 7.79 86.44 0.67 14.93 16 7 O -0.56 -16.95 16.86 -4.33 -0.07 -17.03 16 8 N -0.70 -13.66 5.54 -470.82 -2.61 -16.27 16 9 C 0.16 3.40 5.72 85.63 0.49 3.89 16 10 C -0.14 -2.99 5.26 -15.40 -0.08 -3.07 16 11 C -0.12 -3.15 9.50 26.68 0.25 -2.90 16 12 C 0.08 2.49 5.22 85.39 0.45 2.93 16 13 N -0.53 -16.74 4.46 -905.56 -4.04 -20.78 16 14 C 0.06 1.93 5.44 85.56 0.47 2.40 16 15 C 0.44 20.79 7.54 87.66 0.66 21.45 16 16 O -0.61 -33.85 13.88 -3.07 -0.04 -33.90 16 17 N -0.57 -29.31 5.29 -306.98 -1.62 -30.93 16 18 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 19 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 20 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 21 N -0.92 -49.46 13.05 21.66 0.28 -49.18 16 22 Si 0.99 43.08 29.55 68.60 2.03 45.10 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 26 C 0.05 1.09 5.59 86.26 0.48 1.58 16 27 C -0.07 -1.38 6.04 29.75 0.18 -1.20 16 28 O -0.17 -2.96 10.40 -5.05 -0.05 -3.01 16 29 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.41 6.64 8.22 -92.71 -0.76 5.88 16 35 H 0.08 1.67 8.13 -2.39 -0.02 1.65 16 36 H 0.07 1.56 7.85 -2.39 -0.02 1.54 16 37 H 0.12 2.81 7.81 -2.91 -0.02 2.79 16 38 H 0.07 3.01 5.98 -2.39 -0.01 3.00 16 39 H 0.05 1.40 8.06 -2.39 -0.02 1.38 16 40 H 0.07 2.05 8.06 -2.39 -0.02 2.03 16 41 H 0.11 3.31 7.94 -2.39 -0.02 3.29 16 42 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 43 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 44 H 0.05 0.94 8.08 -2.39 -0.02 0.92 16 45 H 0.09 1.78 7.92 -2.39 -0.02 1.76 16 46 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 47 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -74.60 398.10 -0.19 -74.78 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: -0.48 Total: 35.15 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 6.42 Total: 16.05 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -7.99 Total: -117.15 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -0.17 Total: -53.93 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -74.60 -0.19 -74.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333283221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.150 kcal (2) G-P(sol) polarization free energy of solvation -74.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds