Wall clock time and date at job start Wed Apr 1 2020 05:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38668 * 120.78995 * 2 1 4 4 C 1.38181 * 119.16324 * 180.27178 * 3 2 1 5 5 N 1.31882 * 120.76600 * 359.70378 * 4 3 2 6 6 C 1.31859 * 121.72528 * 0.02562 * 5 4 3 7 7 C 1.38232 * 120.76210 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.41778 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47312 * 265.00132 * 8 7 6 10 10 N 1.46495 * 109.46925 * 180.02562 * 9 8 7 11 11 C 1.34783 * 119.99827 * 180.02562 * 10 9 8 12 12 O 1.21348 * 119.99988 * 359.97438 * 11 10 9 13 13 C 1.49449 * 119.99799 * 180.02562 * 11 10 9 14 14 O 1.21351 * 120.00163 * 0.02562 * 13 11 10 15 15 N 1.34775 * 119.99970 * 179.97438 * 13 11 10 16 16 C 1.47021 * 125.64789 * 0.03799 * 15 13 11 17 17 C 1.54370 * 107.28813 * 181.05641 * 16 15 13 18 18 C 1.55147 * 102.92092 * 22.14333 * 17 16 15 19 19 O 1.42905 * 111.00578 * 82.63751 * 18 17 16 20 20 C 1.50702 * 111.00308 * 206.45025 * 18 17 16 21 21 H 1.08002 * 120.00299 * 356.82421 * 20 18 17 22 22 C 1.37884 * 119.99942 * 176.53980 * 20 18 17 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 18 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 18 25 25 H 1.48501 * 109.47188 * 90.00793 * 24 22 20 26 26 H 1.48501 * 109.47085 * 210.00372 * 24 22 20 27 27 H 1.48498 * 109.47634 * 330.00608 * 24 22 20 28 28 C 1.47423 * 125.64985 * 179.97438 * 15 13 11 29 29 H 1.08991 * 109.47212 * 270.29391 * 1 2 3 30 30 H 1.09007 * 109.46914 * 30.29363 * 1 2 3 31 31 H 1.09000 * 109.46849 * 150.28691 * 1 2 3 32 32 H 1.08007 * 120.42172 * 359.97438 * 3 2 1 33 33 H 1.08007 * 119.62124 * 179.72856 * 4 3 2 34 34 H 1.07993 * 119.62156 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.46482 * 145.00318 * 8 7 6 36 36 H 1.09002 * 109.47037 * 25.00728 * 8 7 6 37 37 H 1.09004 * 109.46587 * 60.00452 * 9 8 7 38 38 H 1.08993 * 109.47425 * 300.00440 * 9 8 7 39 39 H 0.96996 * 120.00455 * 0.02562 * 10 9 8 40 40 H 1.09001 * 109.88518 * 300.44553 * 16 15 13 41 41 H 1.09002 * 109.88165 * 61.60862 * 16 15 13 42 42 H 1.09001 * 110.70699 * 263.79361 * 17 16 15 43 43 H 1.09008 * 110.75075 * 140.51110 * 17 16 15 44 44 H 0.96701 * 113.99475 * 183.17547 * 19 18 17 45 45 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 46 46 H 1.08996 * 110.36708 * 37.06908 * 28 15 13 47 47 H 1.08999 * 110.36888 * 274.74656 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1520 -0.0057 5 7 4.2403 0.0001 -0.0053 6 6 3.5984 -1.1516 0.0001 7 6 2.2166 -1.1909 0.0060 8 6 1.4908 -2.5116 0.0127 9 6 1.1290 -2.9020 -1.4217 10 7 0.4229 -4.1856 -1.4151 11 6 0.0047 -4.7306 -2.5746 12 8 0.2126 -4.1579 -3.6241 13 6 -0.7161 -6.0398 -2.5678 14 8 -0.9252 -6.6119 -1.5182 15 7 -1.1348 -6.5846 -3.7272 16 6 -0.9492 -6.0017 -5.0641 17 6 -1.6118 -6.9589 -6.0779 18 6 -2.6250 -7.7434 -5.2033 19 8 -3.8352 -7.0029 -5.0322 20 6 -2.9055 -9.1031 -5.7896 21 1 -2.4586 -9.3880 -6.7306 22 6 -3.7279 -9.9855 -5.1218 23 7 -4.2721 -9.6385 -3.9759 24 14 -4.0694 -11.6737 -5.8448 25 1 -3.0519 -12.6375 -5.3539 26 1 -5.4212 -12.1262 -5.4286 27 1 -4.0067 -11.5996 -7.3266 28 6 -1.8535 -7.8644 -3.8651 29 1 -0.3633 0.0053 1.0276 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3633 -0.8926 -0.5094 32 1 1.6967 2.1378 -0.0004 33 1 4.1584 2.0754 -0.0102 34 1 4.1585 -2.0750 -0.0002 35 1 0.5806 -2.4228 0.6057 36 1 2.1339 -3.2774 0.4465 37 1 2.0393 -2.9907 -2.0147 38 1 0.4860 -2.1363 -1.8555 39 1 0.2564 -4.6432 -0.5762 40 1 -1.4275 -5.0234 -5.1117 41 1 0.1144 -5.9077 -5.2832 42 1 -0.8730 -7.6332 -6.5111 43 1 -2.1281 -6.3986 -6.8576 44 1 -4.4799 -7.4315 -4.4528 45 1 -4.8510 -10.2592 -3.5062 46 1 -2.5493 -7.9998 -3.0371 47 1 -1.1473 -8.6935 -3.9077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346996551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:44 Heat of formation + Delta-G solvation = -86.747819 kcal Electronic energy + Delta-G solvation = -29897.584271 eV Core-core repulsion = 25659.142729 eV Total energy + Delta-G solvation = -4238.441542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.82063 -40.30649 -38.53909 -37.20148 -36.19558 -34.54091 -34.05644 -32.71380 -32.23420 -30.24894 -29.45732 -28.19676 -27.92042 -26.02637 -24.71257 -23.36024 -22.82774 -21.70464 -21.55316 -19.81031 -19.46035 -17.39500 -17.21820 -17.16000 -16.83085 -16.62409 -15.91145 -15.73725 -15.22000 -15.13699 -14.90023 -14.69823 -14.46988 -14.08739 -13.85957 -13.68568 -13.27216 -13.08033 -13.06484 -13.00840 -12.89005 -12.76363 -12.45047 -12.31024 -11.90584 -11.68029 -11.62128 -11.54538 -11.13670 -11.07968 -10.79953 -10.58540 -10.51156 -10.22656 -9.81351 -9.80695 -9.41831 -9.38140 -9.29776 -9.15999 -8.72260 -8.44322 -7.92496 -6.32866 -4.42140 0.70398 0.86555 1.76135 2.58676 3.18340 3.26251 3.29282 3.39514 3.56990 3.82230 4.09791 4.23401 4.28703 4.31987 4.45118 4.51844 4.59382 4.73871 4.85737 4.95015 4.99261 5.08904 5.14334 5.23405 5.37669 5.41297 5.47006 5.55866 5.69146 5.74730 5.77886 5.82717 5.96141 6.03599 6.13300 6.30908 6.33769 6.49029 6.71090 6.76048 6.81741 7.12795 7.19858 7.28818 7.61584 7.69942 7.83086 7.97027 8.01804 8.41195 8.61964 9.26770 9.37301 10.74498 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029542 B = 0.001867 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.566059 B =14992.947985 C =15066.992829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.034 4.034 3 C -0.173 4.173 4 C 0.098 3.902 5 N -0.489 5.489 6 C 0.109 3.891 7 C -0.135 4.135 8 C -0.090 4.090 9 C 0.124 3.876 10 N -0.709 5.709 11 C 0.510 3.490 12 O -0.515 6.515 13 C 0.508 3.492 14 O -0.539 6.539 15 N -0.573 5.573 16 C 0.111 3.889 17 C -0.122 4.122 18 C 0.249 3.751 19 O -0.582 6.582 20 C -0.537 4.537 21 H 0.068 0.932 22 C 0.070 3.930 23 N -0.895 5.895 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.091 3.909 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.135 0.865 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.413 0.587 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.383 0.617 45 H 0.271 0.729 46 H 0.089 0.911 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.065 17.858 9.189 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.042 4.042 3 C -0.193 4.193 4 C -0.059 4.059 5 N -0.197 5.197 6 C -0.048 4.048 7 C -0.137 4.137 8 C -0.128 4.128 9 C 0.001 3.999 10 N -0.364 5.364 11 C 0.292 3.708 12 O -0.390 6.390 13 C 0.290 3.710 14 O -0.418 6.418 15 N -0.305 5.305 16 C -0.011 4.011 17 C -0.160 4.160 18 C 0.208 3.792 19 O -0.391 6.391 20 C -0.575 4.575 21 H 0.087 0.913 22 C -0.133 4.133 23 N -0.534 5.534 24 Si 0.733 3.267 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.196 1.196 28 C -0.030 4.030 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.153 0.847 33 H 0.172 0.828 34 H 0.173 0.827 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.249 0.751 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.234 0.766 45 H 0.081 0.919 46 H 0.107 0.893 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.225 18.361 8.755 23.732 hybrid contribution -1.396 -1.422 0.546 2.066 sum 10.830 16.939 9.301 22.152 Atomic orbital electron populations 1.20953 0.90080 1.03966 1.03167 1.20266 0.96887 0.92460 0.94550 1.22058 0.95640 0.98661 1.02963 1.22769 0.91805 0.96310 0.94970 1.67709 1.41187 0.98492 1.12340 1.22734 0.90952 0.96432 0.94651 1.20542 0.95078 0.94971 1.03116 1.20720 1.01252 0.94052 0.96800 1.21378 0.97376 0.84876 0.96319 1.45717 1.58183 1.22760 1.09771 1.20433 0.79791 0.86565 0.84039 1.90737 1.54825 1.62646 1.30766 1.19543 0.81720 0.85767 0.84020 1.90723 1.57639 1.63173 1.30250 1.48656 1.52836 1.23279 1.05721 1.22158 1.00054 0.97427 0.81499 1.22727 0.98191 0.97729 0.97336 1.19630 0.81993 0.89425 0.88158 1.86111 1.29267 1.51180 1.72527 1.21484 1.30044 0.98359 1.07596 0.91334 1.25097 0.94671 0.99115 0.94417 1.69650 1.31815 1.37065 1.14828 0.86371 0.77720 0.83105 0.79534 1.20408 1.20983 1.19647 1.23513 0.95084 0.81355 1.03038 0.90222 0.90750 0.90410 0.84733 0.82778 0.82659 0.89520 0.89459 0.90825 0.90906 0.75126 0.91169 0.91735 0.90356 0.90479 0.76595 0.91902 0.89288 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.74 9.31 36.01 0.34 -0.40 16 2 C -0.03 -0.25 5.92 -104.32 -0.62 -0.87 16 3 C -0.17 -1.20 9.82 -39.44 -0.39 -1.59 16 4 C 0.10 0.77 11.18 -17.55 -0.20 0.57 16 5 N -0.49 -4.80 10.36 -13.25 -0.14 -4.94 16 6 C 0.11 0.94 10.84 -17.54 -0.19 0.75 16 7 C -0.13 -1.05 5.15 -104.48 -0.54 -1.58 16 8 C -0.09 -0.61 4.79 -27.88 -0.13 -0.74 16 9 C 0.12 1.17 5.49 -4.04 -0.02 1.15 16 10 N -0.71 -8.52 5.55 -60.73 -0.34 -8.85 16 11 C 0.51 8.34 7.86 -11.58 -0.09 8.25 16 12 O -0.52 -9.19 14.12 5.50 0.08 -9.11 16 13 C 0.51 9.96 7.91 -11.59 -0.09 9.87 16 14 O -0.54 -11.44 16.73 5.50 0.09 -11.35 16 15 N -0.57 -11.99 3.33 -170.98 -0.57 -12.55 16 16 C 0.11 2.13 5.49 -3.04 -0.02 2.12 16 17 C -0.12 -2.46 6.13 -24.88 -0.15 -2.62 16 18 C 0.25 5.95 0.88 -89.61 -0.08 5.87 16 19 O -0.58 -14.73 13.17 -35.23 -0.46 -15.19 16 20 C -0.54 -13.69 8.26 -34.44 -0.28 -13.97 16 21 H 0.07 1.71 7.78 -52.49 -0.41 1.31 16 22 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 23 N -0.89 -23.29 10.69 55.43 0.59 -22.69 16 24 Si 0.91 19.98 29.54 -169.99 -5.02 14.96 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 28 C 0.09 2.13 5.50 -2.52 -0.01 2.12 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 31 H 0.08 0.50 5.61 -51.93 -0.29 0.21 16 32 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 33 H 0.15 0.81 8.06 -52.48 -0.42 0.38 16 34 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.09 0.52 7.11 -51.93 -0.37 0.15 16 36 H 0.09 0.50 8.06 -51.93 -0.42 0.08 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.73 6.94 -51.93 -0.36 0.37 16 39 H 0.41 4.43 7.94 -40.82 -0.32 4.10 16 40 H 0.07 1.36 7.58 -51.93 -0.39 0.97 16 41 H 0.06 1.14 7.70 -51.93 -0.40 0.74 16 42 H 0.08 1.47 8.03 -51.93 -0.42 1.06 16 43 H 0.08 1.50 8.14 -51.92 -0.42 1.08 16 44 H 0.38 9.92 7.26 45.56 0.33 10.25 16 45 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 46 H 0.09 2.31 7.47 -51.93 -0.39 1.92 16 47 H 0.07 1.61 8.03 -51.93 -0.42 1.20 16 LS Contribution 389.16 15.07 5.86 5.86 Total: -1.00 -30.67 389.16 -8.42 -39.09 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -5.95 Total: 14.16 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: -2.57 Total: 10.61 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.45 Total: -49.04 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -0.29 Total: -35.66 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.67 -8.42 -39.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346996551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.654 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds