Wall clock time and date at job start Wed Apr 1 2020 05:27:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.38668 * 120.78995 * 2 1
4 4 C 1.38181 * 119.16324 * 180.27178 * 3 2 1
5 5 N 1.31882 * 120.76600 * 359.70378 * 4 3 2
6 6 C 1.31859 * 121.72528 * 0.02562 * 5 4 3
7 7 C 1.38232 * 120.76210 * 359.97438 * 6 5 4
8 8 C 1.50700 * 120.41778 * 180.02562 * 7 6 5
9 9 C 1.52999 * 109.47312 * 265.00132 * 8 7 6
10 10 N 1.46495 * 109.46925 * 180.02562 * 9 8 7
11 11 C 1.34783 * 119.99827 * 180.02562 * 10 9 8
12 12 O 1.21348 * 119.99988 * 359.97438 * 11 10 9
13 13 C 1.49449 * 119.99799 * 180.02562 * 11 10 9
14 14 O 1.21351 * 120.00163 * 0.02562 * 13 11 10
15 15 N 1.34775 * 119.99970 * 179.97438 * 13 11 10
16 16 C 1.47021 * 125.64789 * 0.03799 * 15 13 11
17 17 C 1.54370 * 107.28813 * 181.05641 * 16 15 13
18 18 C 1.55147 * 102.92092 * 22.14333 * 17 16 15
19 19 O 1.42905 * 111.00578 * 82.63751 * 18 17 16
20 20 C 1.50702 * 111.00308 * 206.45025 * 18 17 16
21 21 H 1.08002 * 120.00299 * 356.82421 * 20 18 17
22 22 C 1.37884 * 119.99942 * 176.53980 * 20 18 17
23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 18
24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 18
25 25 H 1.48501 * 109.47188 * 90.00793 * 24 22 20
26 26 H 1.48501 * 109.47085 * 210.00372 * 24 22 20
27 27 H 1.48498 * 109.47634 * 330.00608 * 24 22 20
28 28 C 1.47423 * 125.64985 * 179.97438 * 15 13 11
29 29 H 1.08991 * 109.47212 * 270.29391 * 1 2 3
30 30 H 1.09007 * 109.46914 * 30.29363 * 1 2 3
31 31 H 1.09000 * 109.46849 * 150.28691 * 1 2 3
32 32 H 1.08007 * 120.42172 * 359.97438 * 3 2 1
33 33 H 1.08007 * 119.62124 * 179.72856 * 4 3 2
34 34 H 1.07993 * 119.62156 * 179.97438 * 6 5 4
35 35 H 1.08996 * 109.46482 * 145.00318 * 8 7 6
36 36 H 1.09002 * 109.47037 * 25.00728 * 8 7 6
37 37 H 1.09004 * 109.46587 * 60.00452 * 9 8 7
38 38 H 1.08993 * 109.47425 * 300.00440 * 9 8 7
39 39 H 0.96996 * 120.00455 * 0.02562 * 10 9 8
40 40 H 1.09001 * 109.88518 * 300.44553 * 16 15 13
41 41 H 1.09002 * 109.88165 * 61.60862 * 16 15 13
42 42 H 1.09001 * 110.70699 * 263.79361 * 17 16 15
43 43 H 1.09008 * 110.75075 * 140.51110 * 17 16 15
44 44 H 0.96701 * 113.99475 * 183.17547 * 19 18 17
45 45 H 0.97005 * 119.99651 * 179.97438 * 23 22 20
46 46 H 1.08996 * 110.36708 * 37.06908 * 28 15 13
47 47 H 1.08999 * 110.36888 * 274.74656 * 28 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.2169 1.1912 0.0000
4 6 3.5981 1.1520 -0.0057
5 7 4.2403 0.0001 -0.0053
6 6 3.5984 -1.1516 0.0001
7 6 2.2166 -1.1909 0.0060
8 6 1.4908 -2.5116 0.0127
9 6 1.1290 -2.9020 -1.4217
10 7 0.4229 -4.1856 -1.4151
11 6 0.0047 -4.7306 -2.5746
12 8 0.2126 -4.1579 -3.6241
13 6 -0.7161 -6.0398 -2.5678
14 8 -0.9252 -6.6119 -1.5182
15 7 -1.1348 -6.5846 -3.7272
16 6 -0.9492 -6.0017 -5.0641
17 6 -1.6118 -6.9589 -6.0779
18 6 -2.6250 -7.7434 -5.2033
19 8 -3.8352 -7.0029 -5.0322
20 6 -2.9055 -9.1031 -5.7896
21 1 -2.4586 -9.3880 -6.7306
22 6 -3.7279 -9.9855 -5.1218
23 7 -4.2721 -9.6385 -3.9759
24 14 -4.0694 -11.6737 -5.8448
25 1 -3.0519 -12.6375 -5.3539
26 1 -5.4212 -12.1262 -5.4286
27 1 -4.0067 -11.5996 -7.3266
28 6 -1.8535 -7.8644 -3.8651
29 1 -0.3633 0.0053 1.0276
30 1 -0.3633 0.8874 -0.5184
31 1 -0.3633 -0.8926 -0.5094
32 1 1.6967 2.1378 -0.0004
33 1 4.1584 2.0754 -0.0102
34 1 4.1585 -2.0750 -0.0002
35 1 0.5806 -2.4228 0.6057
36 1 2.1339 -3.2774 0.4465
37 1 2.0393 -2.9907 -2.0147
38 1 0.4860 -2.1363 -1.8555
39 1 0.2564 -4.6432 -0.5762
40 1 -1.4275 -5.0234 -5.1117
41 1 0.1144 -5.9077 -5.2832
42 1 -0.8730 -7.6332 -6.5111
43 1 -2.1281 -6.3986 -6.8576
44 1 -4.4799 -7.4315 -4.4528
45 1 -4.8510 -10.2592 -3.5062
46 1 -2.5493 -7.9998 -3.0371
47 1 -1.1473 -8.6935 -3.9077
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001346996551.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:27:44
Heat of formation + Delta-G solvation = -86.747819 kcal
Electronic energy + Delta-G solvation = -29897.584271 eV
Core-core repulsion = 25659.142729 eV
Total energy + Delta-G solvation = -4238.441542 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-40.82063 -40.30649 -38.53909 -37.20148 -36.19558 -34.54091 -34.05644 -32.71380
-32.23420 -30.24894 -29.45732 -28.19676 -27.92042 -26.02637 -24.71257 -23.36024
-22.82774 -21.70464 -21.55316 -19.81031 -19.46035 -17.39500 -17.21820 -17.16000
-16.83085 -16.62409 -15.91145 -15.73725 -15.22000 -15.13699 -14.90023 -14.69823
-14.46988 -14.08739 -13.85957 -13.68568 -13.27216 -13.08033 -13.06484 -13.00840
-12.89005 -12.76363 -12.45047 -12.31024 -11.90584 -11.68029 -11.62128 -11.54538
-11.13670 -11.07968 -10.79953 -10.58540 -10.51156 -10.22656 -9.81351 -9.80695
-9.41831 -9.38140 -9.29776 -9.15999 -8.72260 -8.44322 -7.92496 -6.32866
-4.42140 0.70398 0.86555 1.76135 2.58676 3.18340 3.26251 3.29282
3.39514 3.56990 3.82230 4.09791 4.23401 4.28703 4.31987 4.45118
4.51844 4.59382 4.73871 4.85737 4.95015 4.99261 5.08904 5.14334
5.23405 5.37669 5.41297 5.47006 5.55866 5.69146 5.74730 5.77886
5.82717 5.96141 6.03599 6.13300 6.30908 6.33769 6.49029 6.71090
6.76048 6.81741 7.12795 7.19858 7.28818 7.61584 7.69942 7.83086
7.97027 8.01804 8.41195 8.61964 9.26770 9.37301 10.74498
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.029542 B = 0.001867 C = 0.001858
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 947.566059 B =14992.947985 C =15066.992829
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.034 4.034
3 C -0.173 4.173
4 C 0.098 3.902
5 N -0.489 5.489
6 C 0.109 3.891
7 C -0.135 4.135
8 C -0.090 4.090
9 C 0.124 3.876
10 N -0.709 5.709
11 C 0.510 3.490
12 O -0.515 6.515
13 C 0.508 3.492
14 O -0.539 6.539
15 N -0.573 5.573
16 C 0.111 3.889
17 C -0.122 4.122
18 C 0.249 3.751
19 O -0.582 6.582
20 C -0.537 4.537
21 H 0.068 0.932
22 C 0.070 3.930
23 N -0.895 5.895
24 Si 0.905 3.095
25 H -0.278 1.278
26 H -0.284 1.284
27 H -0.272 1.272
28 C 0.091 3.909
29 H 0.079 0.921
30 H 0.074 0.926
31 H 0.077 0.923
32 H 0.135 0.865
33 H 0.155 0.845
34 H 0.156 0.844
35 H 0.086 0.914
36 H 0.087 0.913
37 H 0.073 0.927
38 H 0.073 0.927
39 H 0.413 0.587
40 H 0.070 0.930
41 H 0.064 0.936
42 H 0.078 0.922
43 H 0.077 0.923
44 H 0.383 0.617
45 H 0.271 0.729
46 H 0.089 0.911
47 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.065 17.858 9.189 22.930
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C -0.042 4.042
3 C -0.193 4.193
4 C -0.059 4.059
5 N -0.197 5.197
6 C -0.048 4.048
7 C -0.137 4.137
8 C -0.128 4.128
9 C 0.001 3.999
10 N -0.364 5.364
11 C 0.292 3.708
12 O -0.390 6.390
13 C 0.290 3.710
14 O -0.418 6.418
15 N -0.305 5.305
16 C -0.011 4.011
17 C -0.160 4.160
18 C 0.208 3.792
19 O -0.391 6.391
20 C -0.575 4.575
21 H 0.087 0.913
22 C -0.133 4.133
23 N -0.534 5.534
24 Si 0.733 3.267
25 H -0.204 1.204
26 H -0.210 1.210
27 H -0.196 1.196
28 C -0.030 4.030
29 H 0.098 0.902
30 H 0.093 0.907
31 H 0.096 0.904
32 H 0.153 0.847
33 H 0.172 0.828
34 H 0.173 0.827
35 H 0.105 0.895
36 H 0.105 0.895
37 H 0.092 0.908
38 H 0.091 0.909
39 H 0.249 0.751
40 H 0.088 0.912
41 H 0.083 0.917
42 H 0.096 0.904
43 H 0.095 0.905
44 H 0.234 0.766
45 H 0.081 0.919
46 H 0.107 0.893
47 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 12.225 18.361 8.755 23.732
hybrid contribution -1.396 -1.422 0.546 2.066
sum 10.830 16.939 9.301 22.152
Atomic orbital electron populations
1.20953 0.90080 1.03966 1.03167 1.20266 0.96887 0.92460 0.94550
1.22058 0.95640 0.98661 1.02963 1.22769 0.91805 0.96310 0.94970
1.67709 1.41187 0.98492 1.12340 1.22734 0.90952 0.96432 0.94651
1.20542 0.95078 0.94971 1.03116 1.20720 1.01252 0.94052 0.96800
1.21378 0.97376 0.84876 0.96319 1.45717 1.58183 1.22760 1.09771
1.20433 0.79791 0.86565 0.84039 1.90737 1.54825 1.62646 1.30766
1.19543 0.81720 0.85767 0.84020 1.90723 1.57639 1.63173 1.30250
1.48656 1.52836 1.23279 1.05721 1.22158 1.00054 0.97427 0.81499
1.22727 0.98191 0.97729 0.97336 1.19630 0.81993 0.89425 0.88158
1.86111 1.29267 1.51180 1.72527 1.21484 1.30044 0.98359 1.07596
0.91334 1.25097 0.94671 0.99115 0.94417 1.69650 1.31815 1.37065
1.14828 0.86371 0.77720 0.83105 0.79534 1.20408 1.20983 1.19647
1.23513 0.95084 0.81355 1.03038 0.90222 0.90750 0.90410 0.84733
0.82778 0.82659 0.89520 0.89459 0.90825 0.90906 0.75126 0.91169
0.91735 0.90356 0.90479 0.76595 0.91902 0.89288 0.91400
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -0.74 9.31 36.01 0.34 -0.40 16
2 C -0.03 -0.25 5.92 -104.32 -0.62 -0.87 16
3 C -0.17 -1.20 9.82 -39.44 -0.39 -1.59 16
4 C 0.10 0.77 11.18 -17.55 -0.20 0.57 16
5 N -0.49 -4.80 10.36 -13.25 -0.14 -4.94 16
6 C 0.11 0.94 10.84 -17.54 -0.19 0.75 16
7 C -0.13 -1.05 5.15 -104.48 -0.54 -1.58 16
8 C -0.09 -0.61 4.79 -27.88 -0.13 -0.74 16
9 C 0.12 1.17 5.49 -4.04 -0.02 1.15 16
10 N -0.71 -8.52 5.55 -60.73 -0.34 -8.85 16
11 C 0.51 8.34 7.86 -11.58 -0.09 8.25 16
12 O -0.52 -9.19 14.12 5.50 0.08 -9.11 16
13 C 0.51 9.96 7.91 -11.59 -0.09 9.87 16
14 O -0.54 -11.44 16.73 5.50 0.09 -11.35 16
15 N -0.57 -11.99 3.33 -170.98 -0.57 -12.55 16
16 C 0.11 2.13 5.49 -3.04 -0.02 2.12 16
17 C -0.12 -2.46 6.13 -24.88 -0.15 -2.62 16
18 C 0.25 5.95 0.88 -89.61 -0.08 5.87 16
19 O -0.58 -14.73 13.17 -35.23 -0.46 -15.19 16
20 C -0.54 -13.69 8.26 -34.44 -0.28 -13.97 16
21 H 0.07 1.71 7.78 -52.49 -0.41 1.31 16
22 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16
23 N -0.89 -23.29 10.69 55.43 0.59 -22.69 16
24 Si 0.91 19.98 29.54 -169.99 -5.02 14.96 16
25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16
26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
27 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16
28 C 0.09 2.13 5.50 -2.52 -0.01 2.12 16
29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16
30 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16
31 H 0.08 0.50 5.61 -51.93 -0.29 0.21 16
32 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16
33 H 0.15 0.81 8.06 -52.48 -0.42 0.38 16
34 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16
35 H 0.09 0.52 7.11 -51.93 -0.37 0.15 16
36 H 0.09 0.50 8.06 -51.93 -0.42 0.08 16
37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
38 H 0.07 0.73 6.94 -51.93 -0.36 0.37 16
39 H 0.41 4.43 7.94 -40.82 -0.32 4.10 16
40 H 0.07 1.36 7.58 -51.93 -0.39 0.97 16
41 H 0.06 1.14 7.70 -51.93 -0.40 0.74 16
42 H 0.08 1.47 8.03 -51.93 -0.42 1.06 16
43 H 0.08 1.50 8.14 -51.92 -0.42 1.08 16
44 H 0.38 9.92 7.26 45.56 0.33 10.25 16
45 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16
46 H 0.09 2.31 7.47 -51.93 -0.39 1.92 16
47 H 0.07 1.61 8.03 -51.93 -0.42 1.20 16
LS Contribution 389.16 15.07 5.86 5.86
Total: -1.00 -30.67 389.16 -8.42 -39.09
By element:
Atomic # 1 Polarization: 20.11 SS G_CDS: -5.95 Total: 14.16 kcal
Atomic # 6 Polarization: 13.18 SS G_CDS: -2.57 Total: 10.61 kcal
Atomic # 7 Polarization: -48.59 SS G_CDS: -0.45 Total: -49.04 kcal
Atomic # 8 Polarization: -35.36 SS G_CDS: -0.29 Total: -35.66 kcal
Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -30.67 -8.42 -39.09 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001346996551.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.654 kcal
(2) G-P(sol) polarization free energy of solvation -30.671 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.325 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.748 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds