Wall clock time and date at job start Wed Apr 1 2020 05:27:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.38668 * 120.78995 * 2 1
4 4 C 1.38181 * 119.16324 * 180.27178 * 3 2 1
5 5 N 1.31882 * 120.76600 * 359.70378 * 4 3 2
6 6 C 1.31859 * 121.72528 * 0.02562 * 5 4 3
7 7 C 1.38232 * 120.76210 * 359.97438 * 6 5 4
8 8 C 1.50700 * 120.41778 * 180.02562 * 7 6 5
9 9 C 1.52999 * 109.47312 * 265.00132 * 8 7 6
10 10 N 1.46495 * 109.46925 * 180.02562 * 9 8 7
11 11 C 1.34783 * 119.99827 * 180.02562 * 10 9 8
12 12 O 1.21348 * 119.99988 * 359.97438 * 11 10 9
13 13 C 1.49449 * 119.99799 * 180.02562 * 11 10 9
14 14 O 1.21351 * 120.00163 * 0.02562 * 13 11 10
15 15 N 1.34775 * 119.99970 * 179.97438 * 13 11 10
16 16 C 1.47021 * 125.64789 * 0.03799 * 15 13 11
17 17 C 1.54370 * 107.28813 * 181.05641 * 16 15 13
18 18 C 1.55147 * 102.92092 * 22.14333 * 17 16 15
19 19 O 1.42905 * 111.00578 * 82.63751 * 18 17 16
20 20 C 1.50702 * 111.00308 * 206.45025 * 18 17 16
21 21 H 1.08002 * 120.00299 * 356.82421 * 20 18 17
22 22 C 1.37884 * 119.99942 * 176.53980 * 20 18 17
23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 18
24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 18
25 25 H 1.48501 * 109.47188 * 90.00793 * 24 22 20
26 26 H 1.48501 * 109.47085 * 210.00372 * 24 22 20
27 27 H 1.48498 * 109.47634 * 330.00608 * 24 22 20
28 28 C 1.47423 * 125.64985 * 179.97438 * 15 13 11
29 29 H 1.08991 * 109.47212 * 270.29391 * 1 2 3
30 30 H 1.09007 * 109.46914 * 30.29363 * 1 2 3
31 31 H 1.09000 * 109.46849 * 150.28691 * 1 2 3
32 32 H 1.08007 * 120.42172 * 359.97438 * 3 2 1
33 33 H 1.08007 * 119.62124 * 179.72856 * 4 3 2
34 34 H 1.07993 * 119.62156 * 179.97438 * 6 5 4
35 35 H 1.08996 * 109.46482 * 145.00318 * 8 7 6
36 36 H 1.09002 * 109.47037 * 25.00728 * 8 7 6
37 37 H 1.09004 * 109.46587 * 60.00452 * 9 8 7
38 38 H 1.08993 * 109.47425 * 300.00440 * 9 8 7
39 39 H 0.96996 * 120.00455 * 0.02562 * 10 9 8
40 40 H 1.09001 * 109.88518 * 300.44553 * 16 15 13
41 41 H 1.09002 * 109.88165 * 61.60862 * 16 15 13
42 42 H 1.09001 * 110.70699 * 263.79361 * 17 16 15
43 43 H 1.09008 * 110.75075 * 140.51110 * 17 16 15
44 44 H 0.96701 * 113.99475 * 183.17547 * 19 18 17
45 45 H 0.97005 * 119.99651 * 179.97438 * 23 22 20
46 46 H 1.08996 * 110.36708 * 37.06908 * 28 15 13
47 47 H 1.08999 * 110.36888 * 274.74656 * 28 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.2169 1.1912 0.0000
4 6 3.5981 1.1520 -0.0057
5 7 4.2403 0.0001 -0.0053
6 6 3.5984 -1.1516 0.0001
7 6 2.2166 -1.1909 0.0060
8 6 1.4908 -2.5116 0.0127
9 6 1.1290 -2.9020 -1.4217
10 7 0.4229 -4.1856 -1.4151
11 6 0.0047 -4.7306 -2.5746
12 8 0.2126 -4.1579 -3.6241
13 6 -0.7161 -6.0398 -2.5678
14 8 -0.9252 -6.6119 -1.5182
15 7 -1.1348 -6.5846 -3.7272
16 6 -0.9492 -6.0017 -5.0641
17 6 -1.6118 -6.9589 -6.0779
18 6 -2.6250 -7.7434 -5.2033
19 8 -3.8352 -7.0029 -5.0322
20 6 -2.9055 -9.1031 -5.7896
21 1 -2.4586 -9.3880 -6.7306
22 6 -3.7279 -9.9855 -5.1218
23 7 -4.2721 -9.6385 -3.9759
24 14 -4.0694 -11.6737 -5.8448
25 1 -3.0519 -12.6375 -5.3539
26 1 -5.4212 -12.1262 -5.4286
27 1 -4.0067 -11.5996 -7.3266
28 6 -1.8535 -7.8644 -3.8651
29 1 -0.3633 0.0053 1.0276
30 1 -0.3633 0.8874 -0.5184
31 1 -0.3633 -0.8926 -0.5094
32 1 1.6967 2.1378 -0.0004
33 1 4.1584 2.0754 -0.0102
34 1 4.1585 -2.0750 -0.0002
35 1 0.5806 -2.4228 0.6057
36 1 2.1339 -3.2774 0.4465
37 1 2.0393 -2.9907 -2.0147
38 1 0.4860 -2.1363 -1.8555
39 1 0.2564 -4.6432 -0.5762
40 1 -1.4275 -5.0234 -5.1117
41 1 0.1144 -5.9077 -5.2832
42 1 -0.8730 -7.6332 -6.5111
43 1 -2.1281 -6.3986 -6.8576
44 1 -4.4799 -7.4315 -4.4528
45 1 -4.8510 -10.2592 -3.5062
46 1 -2.5493 -7.9998 -3.0371
47 1 -1.1473 -8.6935 -3.9077
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001346996551.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:27:43
Heat of formation + Delta-G solvation = -109.074901 kcal
Electronic energy + Delta-G solvation = -29898.552446 eV
Core-core repulsion = 25659.142729 eV
Total energy + Delta-G solvation = -4239.409717 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.84195 -41.29450 -40.02895 -38.87372 -37.12947 -36.09238 -34.99139 -34.20411
-33.39665 -31.95564 -30.20869 -29.69637 -28.73721 -27.64812 -25.94042 -24.60371
-23.51569 -22.97447 -22.25780 -21.54452 -20.85772 -19.18457 -18.74377 -18.04300
-17.82883 -17.30102 -17.26496 -17.06262 -16.89792 -16.30151 -16.09479 -15.87264
-15.64063 -15.11679 -15.00657 -14.83446 -14.68010 -14.42955 -14.25260 -13.96442
-13.75399 -13.56821 -13.51237 -13.41409 -13.31861 -13.14058 -12.84586 -12.71262
-12.52918 -12.51003 -12.34318 -12.23473 -12.18374 -12.10777 -11.23104 -10.76607
-10.60395 -10.41072 -10.36688 -10.33920 -10.31387 -9.91811 -9.64096 -8.25888
-6.42280 0.13814 0.30725 0.33565 1.26841 1.43967 1.46492 1.55868
2.11521 2.37309 2.50090 2.82642 3.00285 3.29260 3.57634 3.77187
3.78185 3.80716 3.89114 3.91888 4.02853 4.06818 4.14998 4.28069
4.32333 4.40461 4.58681 4.65182 4.66445 4.72784 4.75084 4.79678
4.87347 4.96004 4.96856 5.05916 5.11691 5.13508 5.15782 5.24439
5.33663 5.43192 5.43200 5.74868 5.80704 5.96617 6.05762 6.37270
6.61582 6.67707 6.91640 7.04571 7.28475 7.36195 8.80039
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.029542 B = 0.001867 C = 0.001858
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 947.566059 B =14992.947985 C =15066.992829
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.042 4.042
3 C -0.175 4.175
4 C 0.086 3.914
5 N -0.520 5.520
6 C 0.095 3.905
7 C -0.140 4.140
8 C -0.079 4.079
9 C 0.126 3.874
10 N -0.687 5.687
11 C 0.517 3.483
12 O -0.531 6.531
13 C 0.502 3.498
14 O -0.560 6.560
15 N -0.583 5.583
16 C 0.120 3.880
17 C -0.116 4.116
18 C 0.233 3.767
19 O -0.589 6.589
20 C -0.555 4.555
21 H 0.070 0.930
22 C 0.027 3.973
23 N -0.915 5.915
24 Si 0.966 3.034
25 H -0.276 1.276
26 H -0.284 1.284
27 H -0.267 1.267
28 C 0.105 3.895
29 H 0.090 0.910
30 H 0.082 0.918
31 H 0.071 0.929
32 H 0.158 0.842
33 H 0.174 0.826
34 H 0.166 0.834
35 H 0.098 0.902
36 H 0.101 0.899
37 H 0.070 0.930
38 H 0.071 0.929
39 H 0.420 0.580
40 H 0.069 0.931
41 H 0.084 0.916
42 H 0.092 0.908
43 H 0.085 0.915
44 H 0.376 0.624
45 H 0.271 0.729
46 H 0.057 0.943
47 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.738 18.869 9.252 24.071
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.050 4.050
3 C -0.194 4.194
4 C -0.070 4.070
5 N -0.229 5.229
6 C -0.062 4.062
7 C -0.143 4.143
8 C -0.118 4.118
9 C 0.003 3.997
10 N -0.341 5.341
11 C 0.297 3.703
12 O -0.407 6.407
13 C 0.285 3.715
14 O -0.440 6.440
15 N -0.315 5.315
16 C -0.002 4.002
17 C -0.154 4.154
18 C 0.192 3.808
19 O -0.397 6.397
20 C -0.593 4.593
21 H 0.088 0.912
22 C -0.174 4.174
23 N -0.554 5.554
24 Si 0.791 3.209
25 H -0.201 1.201
26 H -0.209 1.209
27 H -0.192 1.192
28 C -0.017 4.017
29 H 0.109 0.891
30 H 0.101 0.899
31 H 0.090 0.910
32 H 0.176 0.824
33 H 0.191 0.809
34 H 0.183 0.817
35 H 0.117 0.883
36 H 0.119 0.881
37 H 0.089 0.911
38 H 0.089 0.911
39 H 0.258 0.742
40 H 0.087 0.913
41 H 0.103 0.897
42 H 0.111 0.889
43 H 0.103 0.897
44 H 0.226 0.774
45 H 0.081 0.919
46 H 0.075 0.925
47 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 12.924 19.404 8.842 24.934
hybrid contribution -1.586 -1.659 0.598 2.371
sum 11.338 17.746 9.439 23.077
Atomic orbital electron populations
1.20979 0.89001 1.04123 1.03904 1.20566 0.97779 0.92599 0.94089
1.22339 0.95427 0.99593 1.02055 1.23187 0.92622 0.96559 0.94611
1.67706 1.42253 0.99384 1.13560 1.22988 0.91582 0.96687 0.94903
1.20590 0.94849 0.95430 1.03392 1.20652 1.02006 0.94067 0.95030
1.21529 0.96731 0.83159 0.98247 1.45669 1.56557 1.23171 1.08705
1.19770 0.80095 0.85320 0.85078 1.90733 1.55881 1.62642 1.31490
1.20234 0.81220 0.86824 0.83219 1.90702 1.58319 1.64095 1.30885
1.48693 1.53100 1.22704 1.06960 1.22159 1.01091 0.96734 0.80251
1.22740 0.97520 0.97845 0.97280 1.19865 0.82086 0.89720 0.89100
1.86103 1.29787 1.51454 1.72352 1.21774 1.30384 0.99322 1.07836
0.91158 1.25816 0.94556 1.02280 0.94713 1.69754 1.32079 1.37967
1.15645 0.85432 0.77373 0.79172 0.78912 1.20118 1.20945 1.19175
1.23074 0.94387 0.82540 1.01702 0.89138 0.89871 0.90974 0.82427
0.80853 0.81663 0.88329 0.88078 0.91120 0.91068 0.74180 0.91264
0.89739 0.88909 0.89689 0.77401 0.91947 0.92493 0.92411
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.19 9.31 71.24 0.66 -0.52 16
2 C -0.04 -0.55 5.92 -19.67 -0.12 -0.67 16
3 C -0.17 -2.08 9.82 22.36 0.22 -1.87 16
4 C 0.09 1.24 11.18 84.67 0.95 2.18 16
5 N -0.52 -9.81 10.36 -195.84 -2.03 -11.84 16
6 C 0.09 1.54 10.84 84.69 0.92 2.45 16
7 C -0.14 -1.95 5.15 -19.77 -0.10 -2.05 16
8 C -0.08 -0.91 4.79 29.85 0.14 -0.77 16
9 C 0.13 2.15 5.49 86.38 0.47 2.62 16
10 N -0.69 -15.31 5.55 -464.42 -2.58 -17.89 16
11 C 0.52 16.26 7.86 87.27 0.69 16.95 16
12 O -0.53 -18.15 14.12 -3.24 -0.05 -18.20 16
13 C 0.50 19.54 7.91 87.27 0.69 20.23 16
14 O -0.56 -23.86 16.73 -3.25 -0.05 -23.91 16
15 N -0.58 -24.33 3.33 -813.23 -2.70 -27.03 16
16 C 0.12 4.45 5.49 86.75 0.48 4.93 16
17 C -0.12 -4.58 6.13 31.80 0.19 -4.38 16
18 C 0.23 11.21 0.88 -10.14 -0.01 11.20 16
19 O -0.59 -30.24 13.17 -148.98 -1.96 -32.21 16
20 C -0.56 -28.36 8.26 25.60 0.21 -28.15 16
21 H 0.07 3.48 7.78 -2.91 -0.02 3.46 16
22 C 0.03 1.40 5.29 84.66 0.45 1.84 16
23 N -0.92 -48.44 10.69 21.45 0.23 -48.21 16
24 Si 0.97 40.89 29.54 68.60 2.03 42.92 16
25 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16
26 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16
27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16
28 C 0.11 5.03 5.50 86.86 0.48 5.51 16
29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16
30 H 0.08 0.65 8.10 -2.38 -0.02 0.63 16
31 H 0.07 0.78 5.61 -2.39 -0.01 0.77 16
32 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16
33 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16
34 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16
35 H 0.10 0.93 7.11 -2.39 -0.02 0.91 16
36 H 0.10 0.91 8.06 -2.39 -0.02 0.89 16
37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16
38 H 0.07 1.30 6.94 -2.39 -0.02 1.28 16
39 H 0.42 8.25 7.94 -92.71 -0.74 7.51 16
40 H 0.07 2.60 7.58 -2.39 -0.02 2.58 16
41 H 0.08 2.82 7.70 -2.39 -0.02 2.80 16
42 H 0.09 3.36 8.03 -2.39 -0.02 3.34 16
43 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16
44 H 0.38 20.07 7.26 -74.06 -0.54 19.53 16
45 H 0.27 13.73 8.31 -92.70 -0.77 12.96 16
46 H 0.06 3.06 7.47 -2.39 -0.02 3.04 16
47 H 0.06 2.82 8.03 -2.39 -0.02 2.80 16
Total: -1.00 -65.87 389.16 -1.05 -66.92
By element:
Atomic # 1 Polarization: 40.19 SS G_CDS: -0.25 Total: 39.94 kcal
Atomic # 6 Polarization: 23.19 SS G_CDS: 6.32 Total: 29.51 kcal
Atomic # 7 Polarization: -97.89 SS G_CDS: -7.08 Total: -104.97 kcal
Atomic # 8 Polarization: -72.25 SS G_CDS: -2.06 Total: -74.32 kcal
Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal
Total: -65.87 -1.05 -66.92 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001346996551.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.153 kcal
(2) G-P(sol) polarization free energy of solvation -65.873 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.026 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.049 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.922 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.075 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds