Wall clock time and date at job start Wed Apr 1 2020 05:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38668 * 120.78995 * 2 1 4 4 C 1.38181 * 119.16324 * 180.27178 * 3 2 1 5 5 N 1.31882 * 120.76600 * 359.70378 * 4 3 2 6 6 C 1.31859 * 121.72528 * 0.02562 * 5 4 3 7 7 C 1.38232 * 120.76210 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.41778 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47312 * 265.00132 * 8 7 6 10 10 N 1.46495 * 109.46925 * 180.02562 * 9 8 7 11 11 C 1.34783 * 119.99827 * 180.02562 * 10 9 8 12 12 O 1.21348 * 119.99988 * 359.97438 * 11 10 9 13 13 C 1.49449 * 119.99799 * 180.02562 * 11 10 9 14 14 O 1.21351 * 120.00163 * 0.02562 * 13 11 10 15 15 N 1.34775 * 119.99970 * 179.97438 * 13 11 10 16 16 C 1.47021 * 125.64789 * 0.03799 * 15 13 11 17 17 C 1.54370 * 107.28813 * 181.05641 * 16 15 13 18 18 C 1.55147 * 102.92092 * 22.14333 * 17 16 15 19 19 O 1.42905 * 111.00578 * 82.63751 * 18 17 16 20 20 C 1.50702 * 111.00308 * 206.45025 * 18 17 16 21 21 H 1.08002 * 120.00299 * 356.82421 * 20 18 17 22 22 C 1.37884 * 119.99942 * 176.53980 * 20 18 17 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 18 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 18 25 25 H 1.48501 * 109.47188 * 90.00793 * 24 22 20 26 26 H 1.48501 * 109.47085 * 210.00372 * 24 22 20 27 27 H 1.48498 * 109.47634 * 330.00608 * 24 22 20 28 28 C 1.47423 * 125.64985 * 179.97438 * 15 13 11 29 29 H 1.08991 * 109.47212 * 270.29391 * 1 2 3 30 30 H 1.09007 * 109.46914 * 30.29363 * 1 2 3 31 31 H 1.09000 * 109.46849 * 150.28691 * 1 2 3 32 32 H 1.08007 * 120.42172 * 359.97438 * 3 2 1 33 33 H 1.08007 * 119.62124 * 179.72856 * 4 3 2 34 34 H 1.07993 * 119.62156 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.46482 * 145.00318 * 8 7 6 36 36 H 1.09002 * 109.47037 * 25.00728 * 8 7 6 37 37 H 1.09004 * 109.46587 * 60.00452 * 9 8 7 38 38 H 1.08993 * 109.47425 * 300.00440 * 9 8 7 39 39 H 0.96996 * 120.00455 * 0.02562 * 10 9 8 40 40 H 1.09001 * 109.88518 * 300.44553 * 16 15 13 41 41 H 1.09002 * 109.88165 * 61.60862 * 16 15 13 42 42 H 1.09001 * 110.70699 * 263.79361 * 17 16 15 43 43 H 1.09008 * 110.75075 * 140.51110 * 17 16 15 44 44 H 0.96701 * 113.99475 * 183.17547 * 19 18 17 45 45 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 46 46 H 1.08996 * 110.36708 * 37.06908 * 28 15 13 47 47 H 1.08999 * 110.36888 * 274.74656 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1520 -0.0057 5 7 4.2403 0.0001 -0.0053 6 6 3.5984 -1.1516 0.0001 7 6 2.2166 -1.1909 0.0060 8 6 1.4908 -2.5116 0.0127 9 6 1.1290 -2.9020 -1.4217 10 7 0.4229 -4.1856 -1.4151 11 6 0.0047 -4.7306 -2.5746 12 8 0.2126 -4.1579 -3.6241 13 6 -0.7161 -6.0398 -2.5678 14 8 -0.9252 -6.6119 -1.5182 15 7 -1.1348 -6.5846 -3.7272 16 6 -0.9492 -6.0017 -5.0641 17 6 -1.6118 -6.9589 -6.0779 18 6 -2.6250 -7.7434 -5.2033 19 8 -3.8352 -7.0029 -5.0322 20 6 -2.9055 -9.1031 -5.7896 21 1 -2.4586 -9.3880 -6.7306 22 6 -3.7279 -9.9855 -5.1218 23 7 -4.2721 -9.6385 -3.9759 24 14 -4.0694 -11.6737 -5.8448 25 1 -3.0519 -12.6375 -5.3539 26 1 -5.4212 -12.1262 -5.4286 27 1 -4.0067 -11.5996 -7.3266 28 6 -1.8535 -7.8644 -3.8651 29 1 -0.3633 0.0053 1.0276 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3633 -0.8926 -0.5094 32 1 1.6967 2.1378 -0.0004 33 1 4.1584 2.0754 -0.0102 34 1 4.1585 -2.0750 -0.0002 35 1 0.5806 -2.4228 0.6057 36 1 2.1339 -3.2774 0.4465 37 1 2.0393 -2.9907 -2.0147 38 1 0.4860 -2.1363 -1.8555 39 1 0.2564 -4.6432 -0.5762 40 1 -1.4275 -5.0234 -5.1117 41 1 0.1144 -5.9077 -5.2832 42 1 -0.8730 -7.6332 -6.5111 43 1 -2.1281 -6.3986 -6.8576 44 1 -4.4799 -7.4315 -4.4528 45 1 -4.8510 -10.2592 -3.5062 46 1 -2.5493 -7.9998 -3.0371 47 1 -1.1473 -8.6935 -3.9077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346996551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:43 Heat of formation + Delta-G solvation = -109.074901 kcal Electronic energy + Delta-G solvation = -29898.552446 eV Core-core repulsion = 25659.142729 eV Total energy + Delta-G solvation = -4239.409717 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.84195 -41.29450 -40.02895 -38.87372 -37.12947 -36.09238 -34.99139 -34.20411 -33.39665 -31.95564 -30.20869 -29.69637 -28.73721 -27.64812 -25.94042 -24.60371 -23.51569 -22.97447 -22.25780 -21.54452 -20.85772 -19.18457 -18.74377 -18.04300 -17.82883 -17.30102 -17.26496 -17.06262 -16.89792 -16.30151 -16.09479 -15.87264 -15.64063 -15.11679 -15.00657 -14.83446 -14.68010 -14.42955 -14.25260 -13.96442 -13.75399 -13.56821 -13.51237 -13.41409 -13.31861 -13.14058 -12.84586 -12.71262 -12.52918 -12.51003 -12.34318 -12.23473 -12.18374 -12.10777 -11.23104 -10.76607 -10.60395 -10.41072 -10.36688 -10.33920 -10.31387 -9.91811 -9.64096 -8.25888 -6.42280 0.13814 0.30725 0.33565 1.26841 1.43967 1.46492 1.55868 2.11521 2.37309 2.50090 2.82642 3.00285 3.29260 3.57634 3.77187 3.78185 3.80716 3.89114 3.91888 4.02853 4.06818 4.14998 4.28069 4.32333 4.40461 4.58681 4.65182 4.66445 4.72784 4.75084 4.79678 4.87347 4.96004 4.96856 5.05916 5.11691 5.13508 5.15782 5.24439 5.33663 5.43192 5.43200 5.74868 5.80704 5.96617 6.05762 6.37270 6.61582 6.67707 6.91640 7.04571 7.28475 7.36195 8.80039 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029542 B = 0.001867 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.566059 B =14992.947985 C =15066.992829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.042 4.042 3 C -0.175 4.175 4 C 0.086 3.914 5 N -0.520 5.520 6 C 0.095 3.905 7 C -0.140 4.140 8 C -0.079 4.079 9 C 0.126 3.874 10 N -0.687 5.687 11 C 0.517 3.483 12 O -0.531 6.531 13 C 0.502 3.498 14 O -0.560 6.560 15 N -0.583 5.583 16 C 0.120 3.880 17 C -0.116 4.116 18 C 0.233 3.767 19 O -0.589 6.589 20 C -0.555 4.555 21 H 0.070 0.930 22 C 0.027 3.973 23 N -0.915 5.915 24 Si 0.966 3.034 25 H -0.276 1.276 26 H -0.284 1.284 27 H -0.267 1.267 28 C 0.105 3.895 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.158 0.842 33 H 0.174 0.826 34 H 0.166 0.834 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.420 0.580 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.376 0.624 45 H 0.271 0.729 46 H 0.057 0.943 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.738 18.869 9.252 24.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.050 4.050 3 C -0.194 4.194 4 C -0.070 4.070 5 N -0.229 5.229 6 C -0.062 4.062 7 C -0.143 4.143 8 C -0.118 4.118 9 C 0.003 3.997 10 N -0.341 5.341 11 C 0.297 3.703 12 O -0.407 6.407 13 C 0.285 3.715 14 O -0.440 6.440 15 N -0.315 5.315 16 C -0.002 4.002 17 C -0.154 4.154 18 C 0.192 3.808 19 O -0.397 6.397 20 C -0.593 4.593 21 H 0.088 0.912 22 C -0.174 4.174 23 N -0.554 5.554 24 Si 0.791 3.209 25 H -0.201 1.201 26 H -0.209 1.209 27 H -0.192 1.192 28 C -0.017 4.017 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.176 0.824 33 H 0.191 0.809 34 H 0.183 0.817 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.258 0.742 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.226 0.774 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.924 19.404 8.842 24.934 hybrid contribution -1.586 -1.659 0.598 2.371 sum 11.338 17.746 9.439 23.077 Atomic orbital electron populations 1.20979 0.89001 1.04123 1.03904 1.20566 0.97779 0.92599 0.94089 1.22339 0.95427 0.99593 1.02055 1.23187 0.92622 0.96559 0.94611 1.67706 1.42253 0.99384 1.13560 1.22988 0.91582 0.96687 0.94903 1.20590 0.94849 0.95430 1.03392 1.20652 1.02006 0.94067 0.95030 1.21529 0.96731 0.83159 0.98247 1.45669 1.56557 1.23171 1.08705 1.19770 0.80095 0.85320 0.85078 1.90733 1.55881 1.62642 1.31490 1.20234 0.81220 0.86824 0.83219 1.90702 1.58319 1.64095 1.30885 1.48693 1.53100 1.22704 1.06960 1.22159 1.01091 0.96734 0.80251 1.22740 0.97520 0.97845 0.97280 1.19865 0.82086 0.89720 0.89100 1.86103 1.29787 1.51454 1.72352 1.21774 1.30384 0.99322 1.07836 0.91158 1.25816 0.94556 1.02280 0.94713 1.69754 1.32079 1.37967 1.15645 0.85432 0.77373 0.79172 0.78912 1.20118 1.20945 1.19175 1.23074 0.94387 0.82540 1.01702 0.89138 0.89871 0.90974 0.82427 0.80853 0.81663 0.88329 0.88078 0.91120 0.91068 0.74180 0.91264 0.89739 0.88909 0.89689 0.77401 0.91947 0.92493 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.31 71.24 0.66 -0.52 16 2 C -0.04 -0.55 5.92 -19.67 -0.12 -0.67 16 3 C -0.17 -2.08 9.82 22.36 0.22 -1.87 16 4 C 0.09 1.24 11.18 84.67 0.95 2.18 16 5 N -0.52 -9.81 10.36 -195.84 -2.03 -11.84 16 6 C 0.09 1.54 10.84 84.69 0.92 2.45 16 7 C -0.14 -1.95 5.15 -19.77 -0.10 -2.05 16 8 C -0.08 -0.91 4.79 29.85 0.14 -0.77 16 9 C 0.13 2.15 5.49 86.38 0.47 2.62 16 10 N -0.69 -15.31 5.55 -464.42 -2.58 -17.89 16 11 C 0.52 16.26 7.86 87.27 0.69 16.95 16 12 O -0.53 -18.15 14.12 -3.24 -0.05 -18.20 16 13 C 0.50 19.54 7.91 87.27 0.69 20.23 16 14 O -0.56 -23.86 16.73 -3.25 -0.05 -23.91 16 15 N -0.58 -24.33 3.33 -813.23 -2.70 -27.03 16 16 C 0.12 4.45 5.49 86.75 0.48 4.93 16 17 C -0.12 -4.58 6.13 31.80 0.19 -4.38 16 18 C 0.23 11.21 0.88 -10.14 -0.01 11.20 16 19 O -0.59 -30.24 13.17 -148.98 -1.96 -32.21 16 20 C -0.56 -28.36 8.26 25.60 0.21 -28.15 16 21 H 0.07 3.48 7.78 -2.91 -0.02 3.46 16 22 C 0.03 1.40 5.29 84.66 0.45 1.84 16 23 N -0.92 -48.44 10.69 21.45 0.23 -48.21 16 24 Si 0.97 40.89 29.54 68.60 2.03 42.92 16 25 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 C 0.11 5.03 5.50 86.86 0.48 5.51 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 0.65 8.10 -2.38 -0.02 0.63 16 31 H 0.07 0.78 5.61 -2.39 -0.01 0.77 16 32 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 33 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 34 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 35 H 0.10 0.93 7.11 -2.39 -0.02 0.91 16 36 H 0.10 0.91 8.06 -2.39 -0.02 0.89 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.30 6.94 -2.39 -0.02 1.28 16 39 H 0.42 8.25 7.94 -92.71 -0.74 7.51 16 40 H 0.07 2.60 7.58 -2.39 -0.02 2.58 16 41 H 0.08 2.82 7.70 -2.39 -0.02 2.80 16 42 H 0.09 3.36 8.03 -2.39 -0.02 3.34 16 43 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 44 H 0.38 20.07 7.26 -74.06 -0.54 19.53 16 45 H 0.27 13.73 8.31 -92.70 -0.77 12.96 16 46 H 0.06 3.06 7.47 -2.39 -0.02 3.04 16 47 H 0.06 2.82 8.03 -2.39 -0.02 2.80 16 Total: -1.00 -65.87 389.16 -1.05 -66.92 By element: Atomic # 1 Polarization: 40.19 SS G_CDS: -0.25 Total: 39.94 kcal Atomic # 6 Polarization: 23.19 SS G_CDS: 6.32 Total: 29.51 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -7.08 Total: -104.97 kcal Atomic # 8 Polarization: -72.25 SS G_CDS: -2.06 Total: -74.32 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -65.87 -1.05 -66.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346996551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.153 kcal (2) G-P(sol) polarization free energy of solvation -65.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds