Wall clock time and date at job start Wed Apr 1 2020 05:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38671 * 120.79228 * 2 1 4 4 C 1.38183 * 119.16268 * 180.27307 * 3 2 1 5 5 N 1.31888 * 120.76450 * 359.71013 * 4 3 2 6 6 C 1.31855 * 121.72599 * 0.02562 * 5 4 3 7 7 C 1.38224 * 120.76597 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.42015 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47301 * 264.99695 * 8 7 6 10 10 N 1.46504 * 109.46973 * 180.02562 * 9 8 7 11 11 C 1.34777 * 119.99545 * 179.97438 * 10 9 8 12 12 O 1.21353 * 120.00349 * 0.02562 * 11 10 9 13 13 C 1.49450 * 119.99901 * 179.97438 * 11 10 9 14 14 O 1.21346 * 120.00070 * 0.02562 * 13 11 10 15 15 N 1.34777 * 119.99901 * 180.02562 * 13 11 10 16 16 C 1.47018 * 125.64981 * 0.03117 * 15 13 11 17 17 C 1.54325 * 107.40412 * 178.82520 * 16 15 13 18 18 C 1.55405 * 102.82616 * 337.97548 * 17 16 15 19 19 O 1.42894 * 110.89418 * 277.26698 * 18 17 16 20 20 C 1.50704 * 111.07313 * 153.48318 * 18 17 16 21 21 H 1.08006 * 119.99604 * 6.21211 * 20 18 17 22 22 C 1.37874 * 120.00539 * 186.20801 * 20 18 17 23 23 N 1.31519 * 119.99600 * 0.02562 * 22 20 18 24 24 Si 1.86798 * 120.00227 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46817 * 60.00331 * 24 22 20 26 26 H 1.48501 * 109.46772 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46938 * 300.00200 * 24 22 20 28 28 C 1.47426 * 125.64500 * 179.97438 * 15 13 11 29 29 H 1.08994 * 109.47270 * 270.28616 * 1 2 3 30 30 H 1.09004 * 109.47054 * 30.28891 * 1 2 3 31 31 H 1.09003 * 109.47178 * 150.28784 * 1 2 3 32 32 H 1.07998 * 120.41696 * 359.97438 * 3 2 1 33 33 H 1.07993 * 119.61794 * 179.72440 * 4 3 2 34 34 H 1.08005 * 119.61476 * 180.02562 * 6 5 4 35 35 H 1.09005 * 109.46993 * 144.99551 * 8 7 6 36 36 H 1.09001 * 109.47122 * 25.00297 * 8 7 6 37 37 H 1.09001 * 109.46735 * 60.00046 * 9 8 7 38 38 H 1.08998 * 109.47041 * 300.00295 * 9 8 7 39 39 H 0.96990 * 119.99946 * 0.02562 * 10 9 8 40 40 H 1.09002 * 109.88241 * 298.32048 * 16 15 13 41 41 H 1.09000 * 109.88049 * 59.33177 * 16 15 13 42 42 H 1.09000 * 110.72188 * 96.24097 * 17 16 15 43 43 H 1.09002 * 110.72265 * 219.52294 * 17 16 15 44 44 H 0.96703 * 114.00602 * 173.68794 * 19 18 17 45 45 H 0.96998 * 120.00006 * 179.97438 * 23 22 20 46 46 H 1.08999 * 110.36956 * 323.01018 * 28 15 13 47 47 H 1.09001 * 110.36709 * 85.22211 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1519 -0.0058 5 7 4.2402 -0.0001 -0.0055 6 6 3.5982 -1.1517 -0.0002 7 6 2.2166 -1.1910 0.0057 8 6 1.4908 -2.5116 0.0123 9 6 1.1288 -2.9018 -1.4222 10 7 0.4227 -4.1854 -1.4157 11 6 0.0034 -4.7297 -2.5752 12 8 0.2113 -4.1568 -3.6246 13 6 -0.7164 -6.0394 -2.5687 14 8 -0.9239 -6.6125 -1.5195 15 7 -1.1352 -6.5839 -3.7283 16 6 -0.9507 -6.0002 -5.0650 17 6 -1.5619 -6.9827 -6.0861 18 6 -1.5565 -8.3310 -5.3134 19 8 -0.2764 -8.9606 -5.3960 20 6 -2.6402 -9.2489 -5.8176 21 1 -3.2253 -8.9700 -6.6816 22 6 -2.8847 -10.4446 -5.1762 23 7 -2.1725 -10.7839 -4.1239 24 14 -4.2275 -11.5826 -5.8017 25 1 -3.9270 -11.9807 -7.2004 26 1 -4.2893 -12.7934 -4.9442 27 1 -5.5339 -10.8779 -5.7574 28 6 -1.8531 -7.8641 -3.8665 29 1 -0.3633 0.0051 1.0276 30 1 -0.3633 0.8874 -0.5183 31 1 -0.3634 -0.8926 -0.5094 32 1 1.6967 2.1377 -0.0004 33 1 4.1583 2.0752 -0.0103 34 1 4.1585 -2.0751 0.0003 35 1 0.5805 -2.4230 0.6054 36 1 2.1338 -3.2775 0.4459 37 1 2.0390 -2.9904 -2.0153 38 1 0.4858 -2.1359 -1.8558 39 1 0.2562 -4.6431 -0.5769 40 1 -1.4617 -5.0391 -5.1235 41 1 0.1120 -5.8678 -5.2682 42 1 -2.5801 -6.6894 -6.3417 43 1 -0.9414 -7.0453 -6.9801 44 1 -0.1929 -9.7553 -4.8514 45 1 -2.3448 -11.6249 -3.6724 46 1 -1.4742 -8.5910 -3.1480 47 1 -2.9238 -7.7157 -3.7260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346996552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:47 Heat of formation + Delta-G solvation = -86.504105 kcal Electronic energy + Delta-G solvation = -29894.111744 eV Core-core repulsion = 25655.680770 eV Total energy + Delta-G solvation = -4238.430974 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.82158 -40.30492 -38.53559 -37.19738 -36.19555 -34.53612 -34.04974 -32.71491 -32.26705 -30.23658 -29.45920 -28.20424 -27.90311 -26.02340 -24.71094 -23.35755 -22.82924 -21.70534 -21.55335 -19.81828 -19.46350 -17.38225 -17.22644 -17.13314 -16.82850 -16.62249 -15.90460 -15.75351 -15.20231 -15.14536 -14.91284 -14.68628 -14.48194 -14.09682 -13.87705 -13.66517 -13.28415 -13.07567 -13.07076 -13.02446 -12.88803 -12.76221 -12.45217 -12.30564 -11.90237 -11.69430 -11.63647 -11.51592 -11.13626 -11.05206 -10.81428 -10.59330 -10.51725 -10.23050 -9.81244 -9.81126 -9.40844 -9.37251 -9.29819 -9.15542 -8.71877 -8.43059 -7.92981 -6.31364 -4.40983 0.70377 0.86265 1.76291 2.58811 3.20513 3.26284 3.28264 3.39480 3.57179 3.82424 4.09997 4.24138 4.28027 4.31666 4.44868 4.51650 4.59353 4.73918 4.85374 4.96217 4.98459 5.08241 5.12484 5.23003 5.37408 5.40596 5.46939 5.55708 5.68461 5.73918 5.77537 5.81286 5.95538 6.03931 6.13242 6.30934 6.33708 6.49266 6.71175 6.76937 6.82501 7.13044 7.19935 7.29229 7.61851 7.70370 7.83483 7.98749 8.02223 8.41522 8.62949 9.26342 9.34873 10.75824 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029375 B = 0.001867 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.977309 B =14996.766002 C =15088.017009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.034 4.034 3 C -0.174 4.174 4 C 0.098 3.902 5 N -0.488 5.488 6 C 0.110 3.890 7 C -0.134 4.134 8 C -0.090 4.090 9 C 0.124 3.876 10 N -0.709 5.709 11 C 0.510 3.490 12 O -0.515 6.515 13 C 0.508 3.492 14 O -0.538 6.538 15 N -0.574 5.574 16 C 0.111 3.889 17 C -0.122 4.122 18 C 0.249 3.751 19 O -0.581 6.581 20 C -0.537 4.537 21 H 0.068 0.932 22 C 0.071 3.929 23 N -0.894 5.894 24 Si 0.905 3.095 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.275 1.275 28 C 0.092 3.908 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.135 0.865 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.413 0.587 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.381 0.619 45 H 0.271 0.729 46 H 0.091 0.909 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.078 20.647 9.686 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.042 4.042 3 C -0.193 4.193 4 C -0.058 4.058 5 N -0.197 5.197 6 C -0.047 4.047 7 C -0.137 4.137 8 C -0.128 4.128 9 C 0.001 3.999 10 N -0.364 5.364 11 C 0.292 3.708 12 O -0.390 6.390 13 C 0.290 3.710 14 O -0.417 6.417 15 N -0.306 5.306 16 C -0.012 4.012 17 C -0.160 4.160 18 C 0.208 3.792 19 O -0.389 6.389 20 C -0.575 4.575 21 H 0.086 0.914 22 C -0.133 4.133 23 N -0.532 5.532 24 Si 0.732 3.268 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.200 1.200 28 C -0.029 4.029 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.152 0.848 33 H 0.172 0.828 34 H 0.174 0.826 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.249 0.751 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.231 0.769 45 H 0.081 0.919 46 H 0.109 0.891 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.193 21.151 9.239 24.176 hybrid contribution -1.777 -1.187 0.585 2.215 sum 5.416 19.964 9.825 22.900 Atomic orbital electron populations 1.20946 0.90128 1.03904 1.03136 1.20259 0.96856 0.92466 0.94641 1.22053 0.95646 0.98639 1.03010 1.22771 0.91802 0.96319 0.94954 1.67713 1.41186 0.98489 1.12300 1.22746 0.90963 0.96451 0.94565 1.20542 0.95088 0.94961 1.03106 1.20721 1.01240 0.94075 0.96792 1.21379 0.97419 0.84824 0.96327 1.45716 1.58156 1.22775 1.09778 1.20438 0.79848 0.86527 0.84024 1.90738 1.54925 1.62598 1.30729 1.19537 0.81579 0.85886 0.84047 1.90723 1.57682 1.63034 1.30308 1.48674 1.52963 1.23253 1.05666 1.22141 1.01268 0.96195 0.81555 1.22755 1.00683 0.94932 0.97588 1.19690 0.82912 0.88633 0.87973 1.86134 1.35073 1.45718 1.72024 1.21422 1.17980 1.03601 1.14526 0.91425 1.25091 0.96223 0.97746 0.94212 1.69701 1.40176 1.23881 1.19476 0.86436 0.81682 0.79725 0.78918 1.19963 1.21092 1.20015 1.23494 0.95273 0.81513 1.02574 0.90249 0.90782 0.90444 0.84753 0.82780 0.82618 0.89555 0.89419 0.90786 0.90945 0.75125 0.91779 0.91173 0.90342 0.90490 0.76948 0.91898 0.89073 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 9.31 36.00 0.34 -0.36 16 2 C -0.03 -0.25 5.92 -104.32 -0.62 -0.87 16 3 C -0.17 -1.19 9.82 -39.44 -0.39 -1.57 16 4 C 0.10 0.77 11.18 -17.55 -0.20 0.57 16 5 N -0.49 -4.83 10.36 -13.25 -0.14 -4.97 16 6 C 0.11 0.95 10.84 -17.55 -0.19 0.76 16 7 C -0.13 -1.04 5.15 -104.48 -0.54 -1.58 16 8 C -0.09 -0.61 4.79 -27.89 -0.13 -0.74 16 9 C 0.12 1.17 5.49 -4.04 -0.02 1.15 16 10 N -0.71 -8.51 5.55 -60.73 -0.34 -8.85 16 11 C 0.51 8.33 7.86 -11.58 -0.09 8.24 16 12 O -0.52 -9.19 14.12 5.49 0.08 -9.11 16 13 C 0.51 9.96 7.91 -11.58 -0.09 9.86 16 14 O -0.54 -11.44 16.73 5.50 0.09 -11.35 16 15 N -0.57 -11.99 3.33 -171.03 -0.57 -12.56 16 16 C 0.11 2.13 5.48 -3.07 -0.02 2.11 16 17 C -0.12 -2.46 6.15 -24.76 -0.15 -2.61 16 18 C 0.25 5.95 0.87 -89.49 -0.08 5.87 16 19 O -0.58 -14.67 13.16 -35.23 -0.46 -15.14 16 20 C -0.54 -13.72 8.28 -34.44 -0.29 -14.01 16 21 H 0.07 1.69 7.79 -52.48 -0.41 1.28 16 22 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 23 N -0.89 -23.31 10.69 55.43 0.59 -22.71 16 24 Si 0.91 20.01 29.54 -169.99 -5.02 14.99 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 26 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 C 0.09 2.16 5.39 -2.53 -0.01 2.15 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 31 H 0.08 0.47 5.61 -51.93 -0.29 0.18 16 32 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 33 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 34 H 0.16 1.08 8.06 -52.48 -0.42 0.66 16 35 H 0.09 0.51 7.11 -51.93 -0.37 0.14 16 36 H 0.09 0.51 8.06 -51.93 -0.42 0.09 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.71 6.94 -51.93 -0.36 0.35 16 39 H 0.41 4.43 7.94 -40.82 -0.32 4.10 16 40 H 0.06 1.13 7.70 -51.93 -0.40 0.73 16 41 H 0.07 1.36 7.57 -51.93 -0.39 0.97 16 42 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 44 H 0.38 9.77 7.57 45.56 0.34 10.12 16 45 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 46 H 0.09 2.37 7.32 -51.93 -0.38 1.99 16 47 H 0.07 1.62 8.03 -51.93 -0.42 1.21 16 LS Contribution 389.23 15.07 5.87 5.87 Total: -1.00 -30.73 389.23 -8.40 -39.13 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -5.93 Total: 14.03 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: -2.57 Total: 10.68 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: -0.45 Total: -49.10 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -0.29 Total: -35.60 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.73 -8.40 -39.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346996552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.377 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds