Wall clock time and date at job start Wed Apr 1 2020 05:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38668 * 120.78863 * 2 1 4 4 C 1.38183 * 119.16283 * 180.02562 * 3 2 1 5 5 N 1.31887 * 120.76730 * 0.02562 * 4 3 2 6 6 C 1.31864 * 121.72375 * 359.68245 * 5 4 3 7 7 C 1.38232 * 120.75795 * 0.57858 * 6 5 4 8 8 C 1.50700 * 120.41491 * 179.73244 * 7 6 5 9 9 H 1.09008 * 109.46625 * 213.23930 * 8 7 6 10 10 C 1.52998 * 109.47312 * 93.24369 * 8 7 6 11 11 N 1.46504 * 109.47151 * 333.23788 * 8 7 6 12 12 C 1.34777 * 119.99783 * 207.26853 * 11 8 7 13 13 O 1.21351 * 119.99974 * 0.02562 * 12 11 8 14 14 C 1.49448 * 119.99812 * 179.97438 * 12 11 8 15 15 O 1.21349 * 119.99855 * 0.02562 * 14 12 11 16 16 N 1.34778 * 120.00042 * 180.02562 * 14 12 11 17 17 C 1.47023 * 125.64679 * 359.95629 * 16 14 12 18 18 C 1.54327 * 107.27084 * 181.09824 * 17 16 14 19 19 C 1.55162 * 102.94186 * 22.19506 * 18 17 16 20 20 O 1.42900 * 111.00519 * 82.57093 * 19 18 17 21 21 C 1.50703 * 111.03605 * 206.41204 * 19 18 17 22 22 H 1.07997 * 120.00263 * 356.79414 * 21 19 18 23 23 C 1.37878 * 119.99759 * 176.79511 * 21 19 18 24 24 N 1.31511 * 120.00099 * 0.02562 * 23 21 19 25 25 Si 1.86800 * 119.99916 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47018 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47037 * 120.00047 * 25 23 21 28 28 H 1.48495 * 109.47287 * 240.00371 * 25 23 21 29 29 C 1.47426 * 125.64990 * 180.02562 * 16 14 12 30 30 H 1.09003 * 109.47333 * 269.98475 * 1 2 3 31 31 H 1.09011 * 109.46972 * 29.98272 * 1 2 3 32 32 H 1.08993 * 109.47120 * 149.97962 * 1 2 3 33 33 H 1.08002 * 120.42142 * 359.97438 * 3 2 1 34 34 H 1.07999 * 119.61949 * 179.97438 * 4 3 2 35 35 H 1.07995 * 119.62073 * 180.28821 * 6 5 4 36 36 H 1.09001 * 109.47332 * 59.99408 * 10 8 7 37 37 H 1.08994 * 109.47402 * 179.97438 * 10 8 7 38 38 H 1.09009 * 109.46353 * 299.99890 * 10 8 7 39 39 H 0.96996 * 120.00013 * 27.27678 * 11 8 7 40 40 H 1.08994 * 109.88258 * 300.51712 * 17 16 14 41 41 H 1.09002 * 109.88144 * 61.68567 * 17 16 14 42 42 H 1.09002 * 110.71645 * 263.83678 * 18 17 16 43 43 H 1.08993 * 110.72435 * 140.55930 * 18 17 16 44 44 H 0.96697 * 113.99842 * 186.34824 * 20 19 18 45 45 H 0.96997 * 119.99973 * 180.02562 * 24 23 21 46 46 H 1.09007 * 110.36600 * 36.99144 * 29 16 14 47 47 H 1.09001 * 110.45674 * 274.72363 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2403 0.0001 -0.0016 6 6 3.5983 -1.1517 0.0041 7 6 2.2166 -1.1909 -0.0006 8 6 1.4908 -2.5116 -0.0001 9 1 0.5645 -2.4173 -0.5669 10 6 1.1686 -2.9160 1.4398 11 7 2.3386 -3.5350 -0.6168 12 6 1.7769 -4.5990 -1.2242 13 8 0.5690 -4.7090 -1.2606 14 6 2.6418 -5.6426 -1.8538 15 8 3.8497 -5.5322 -1.8177 16 7 2.0801 -6.7063 -2.4616 17 6 0.6373 -6.9641 -2.5772 18 6 0.4696 -8.3045 -3.3235 19 6 1.8334 -9.0061 -3.0883 20 8 1.8622 -9.6565 -1.8162 21 6 2.1390 -9.9802 -4.1969 22 1 1.4177 -10.1469 -4.9833 23 6 3.3393 -10.6585 -4.2072 24 7 4.2173 -10.4559 -3.2493 25 14 3.7177 -11.8665 -5.5809 26 1 2.5746 -11.9134 -6.5276 27 1 4.9396 -11.4286 -6.3023 28 1 3.9399 -13.2171 -5.0052 29 6 2.8108 -7.8049 -3.1195 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8897 -0.5141 33 1 1.6966 2.1378 -0.0004 34 1 4.1583 2.0754 -0.0010 35 1 4.1585 -2.0750 0.0078 36 1 0.5379 -2.1546 1.8987 37 1 0.6433 -3.8710 1.4402 38 1 2.0950 -3.0103 2.0066 39 1 3.3041 -3.4468 -0.5879 40 1 0.1926 -7.0344 -1.5846 41 1 0.1617 -6.1629 -3.1429 42 1 0.3014 -8.1352 -4.3871 43 1 -0.3435 -8.8875 -2.8913 44 1 2.7249 -10.0258 -1.5828 45 1 5.0619 -10.9329 -3.2567 46 1 3.7198 -8.0408 -2.5660 47 1 3.0524 -7.5391 -4.1486 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349222376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:04 Heat of formation + Delta-G solvation = -76.983434 kcal Electronic energy + Delta-G solvation = -30700.195478 eV Core-core repulsion = 26462.177351 eV Total energy + Delta-G solvation = -4238.018127 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.08393 -40.20227 -38.58055 -37.21376 -36.25333 -34.44602 -34.08129 -32.22842 -31.73354 -30.25465 -29.92549 -28.24659 -27.94935 -26.02629 -24.82657 -23.95190 -22.78471 -21.96593 -20.96057 -19.86653 -19.54869 -17.61634 -17.29654 -17.19005 -16.65335 -16.23361 -15.80364 -15.73464 -15.17093 -15.08213 -14.88790 -14.63277 -14.35652 -14.19767 -13.77353 -13.41354 -13.27563 -13.08683 -13.07372 -13.03110 -12.89507 -12.67940 -12.49595 -12.31211 -11.99930 -11.65784 -11.53153 -11.43464 -11.13508 -11.08438 -10.80619 -10.59108 -10.46654 -10.21630 -9.82889 -9.75013 -9.51705 -9.42263 -9.25830 -9.18184 -8.71707 -8.42302 -7.93052 -6.31683 -4.40601 0.71958 0.87781 1.73659 2.53811 3.18493 3.27587 3.30967 3.41885 3.55339 3.79766 3.98067 4.24504 4.26036 4.32437 4.45382 4.60082 4.63866 4.92234 4.95678 4.97484 5.05526 5.08916 5.16192 5.33144 5.40710 5.47031 5.49366 5.56493 5.72333 5.77686 5.82226 5.88968 5.94677 6.04080 6.17496 6.30242 6.32791 6.48744 6.70832 6.75731 6.81670 7.10254 7.17591 7.28722 7.64247 7.71136 7.79897 7.98437 8.00791 8.40168 8.63538 9.27967 9.37849 10.75978 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022879 B = 0.002288 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.519536 B =12233.569481 C =12843.290830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.030 4.030 3 C -0.172 4.172 4 C 0.099 3.901 5 N -0.482 5.482 6 C 0.110 3.890 7 C -0.146 4.146 8 C 0.186 3.814 9 H 0.107 0.893 10 C -0.159 4.159 11 N -0.706 5.706 12 C 0.515 3.485 13 O -0.514 6.514 14 C 0.507 3.493 15 O -0.537 6.537 16 N -0.573 5.573 17 C 0.111 3.889 18 C -0.122 4.122 19 C 0.249 3.751 20 O -0.581 6.581 21 C -0.535 4.535 22 H 0.069 0.931 23 C 0.071 3.929 24 N -0.894 5.894 25 Si 0.905 3.095 26 H -0.271 1.271 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.090 3.910 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.137 0.863 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.410 0.590 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.383 0.617 45 H 0.270 0.730 46 H 0.089 0.911 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.290 21.062 7.616 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.038 4.038 3 C -0.191 4.191 4 C -0.057 4.057 5 N -0.190 5.190 6 C -0.047 4.047 7 C -0.148 4.148 8 C 0.081 3.919 9 H 0.124 0.876 10 C -0.217 4.217 11 N -0.362 5.362 12 C 0.296 3.704 13 O -0.389 6.389 14 C 0.289 3.711 15 O -0.416 6.416 16 N -0.305 5.305 17 C -0.011 4.011 18 C -0.160 4.160 19 C 0.208 3.792 20 O -0.390 6.390 21 C -0.574 4.574 22 H 0.087 0.913 23 C -0.133 4.133 24 N -0.533 5.533 25 Si 0.732 3.268 26 H -0.196 1.196 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.031 4.031 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.154 0.846 34 H 0.174 0.826 35 H 0.172 0.828 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.248 0.752 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.233 0.767 45 H 0.080 0.920 46 H 0.107 0.893 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.042 21.210 7.688 23.355 hybrid contribution 0.562 -0.639 -0.688 1.094 sum -5.480 20.571 7.001 22.409 Atomic orbital electron populations 1.20954 0.89987 1.03900 1.03263 1.20112 0.96890 0.92061 0.94762 1.22034 0.95634 0.98506 1.02963 1.22815 0.91815 0.96342 0.94771 1.67732 1.41004 0.98327 1.11957 1.22551 0.90934 0.96508 0.94696 1.20796 0.95428 0.95106 1.03494 1.19801 0.93863 0.82916 0.95279 0.87554 1.22173 1.02480 1.02693 0.94389 1.45926 1.11338 1.22291 1.56695 1.20442 0.88417 0.82745 0.78761 1.90722 1.14268 1.76182 1.57695 1.19514 0.87681 0.82809 0.81084 1.90733 1.13910 1.76962 1.59970 1.48651 1.09612 1.20909 1.51288 1.22153 0.80186 0.97731 1.01058 1.22719 0.99672 0.93832 0.99762 1.19633 0.88380 0.87785 0.83380 1.86114 1.38814 1.76430 1.37668 1.21507 1.02554 1.24027 1.09272 0.91314 1.25088 0.95634 0.96363 0.96183 1.69654 1.08697 1.42269 1.32686 0.86329 0.78358 0.80562 0.81543 1.19552 1.20778 1.20732 1.23529 0.98160 0.85010 0.96418 0.90039 0.90723 0.90354 0.84557 0.82611 0.82846 0.91248 0.90977 0.91880 0.75158 0.91124 0.91745 0.90367 0.90480 0.76668 0.91970 0.89273 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 9.67 36.00 0.35 -0.38 16 2 C -0.03 -0.24 5.92 -104.32 -0.62 -0.86 16 3 C -0.17 -1.24 9.82 -39.44 -0.39 -1.63 16 4 C 0.10 0.84 11.18 -17.55 -0.20 0.65 16 5 N -0.48 -5.37 10.36 -13.25 -0.14 -5.51 16 6 C 0.11 1.18 10.40 -17.54 -0.18 0.99 16 7 C -0.15 -1.40 5.06 -104.48 -0.53 -1.93 16 8 C 0.19 1.92 2.40 -69.08 -0.17 1.75 16 9 H 0.11 1.14 5.58 -51.92 -0.29 0.85 16 10 C -0.16 -1.46 9.49 37.16 0.35 -1.11 16 11 N -0.71 -9.08 4.97 -55.36 -0.28 -9.35 16 12 C 0.51 8.41 7.84 -11.59 -0.09 8.32 16 13 O -0.51 -8.82 13.75 5.50 0.08 -8.74 16 14 C 0.51 10.02 7.91 -11.59 -0.09 9.93 16 15 O -0.54 -11.59 16.73 5.50 0.09 -11.50 16 16 N -0.57 -11.94 3.33 -171.03 -0.57 -12.51 16 17 C 0.11 2.11 5.49 -3.06 -0.02 2.09 16 18 C -0.12 -2.45 6.13 -24.89 -0.15 -2.60 16 19 C 0.25 5.95 0.87 -89.63 -0.08 5.88 16 20 O -0.58 -14.71 13.15 -35.23 -0.46 -15.17 16 21 C -0.54 -13.69 8.26 -34.44 -0.28 -13.98 16 22 H 0.07 1.73 7.78 -52.49 -0.41 1.32 16 23 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 24 N -0.89 -23.40 10.72 55.43 0.59 -22.81 16 25 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 29 C 0.09 2.10 5.50 -2.54 -0.01 2.09 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.34 8.10 -51.92 -0.42 -0.08 16 32 H 0.08 0.50 6.14 -51.93 -0.32 0.18 16 33 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 34 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.15 1.52 6.16 -52.49 -0.32 1.20 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.41 5.03 5.80 -40.82 -0.24 4.79 16 40 H 0.07 1.34 7.58 -51.93 -0.39 0.95 16 41 H 0.06 1.12 7.69 -51.93 -0.40 0.72 16 42 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 43 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.38 9.91 7.32 45.56 0.33 10.25 16 45 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 46 H 0.09 2.32 7.47 -51.93 -0.39 1.93 16 47 H 0.07 1.63 8.03 -51.93 -0.42 1.21 16 LS Contribution 385.94 15.07 5.82 5.82 Total: -1.00 -30.13 385.94 -7.86 -37.99 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -5.77 Total: 15.78 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -2.20 Total: 10.93 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.39 Total: -50.18 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -0.30 Total: -35.41 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.13 -7.86 -37.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349222376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.991 kcal (2) G-P(sol) polarization free energy of solvation -30.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds