Wall clock time and date at job start Wed Apr 1 2020 05:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38668 * 120.78863 * 2 1 4 4 C 1.38183 * 119.16283 * 180.02562 * 3 2 1 5 5 N 1.31887 * 120.76730 * 0.02562 * 4 3 2 6 6 C 1.31864 * 121.72375 * 359.68245 * 5 4 3 7 7 C 1.38232 * 120.75795 * 0.57858 * 6 5 4 8 8 C 1.50700 * 120.41491 * 179.73244 * 7 6 5 9 9 H 1.09008 * 109.46625 * 213.23930 * 8 7 6 10 10 C 1.52998 * 109.47312 * 93.24369 * 8 7 6 11 11 N 1.46504 * 109.47151 * 333.23788 * 8 7 6 12 12 C 1.34777 * 119.99783 * 207.26853 * 11 8 7 13 13 O 1.21351 * 119.99974 * 0.02562 * 12 11 8 14 14 C 1.49448 * 119.99812 * 179.97438 * 12 11 8 15 15 O 1.21349 * 119.99855 * 0.02562 * 14 12 11 16 16 N 1.34778 * 120.00042 * 180.02562 * 14 12 11 17 17 C 1.47023 * 125.64679 * 359.95629 * 16 14 12 18 18 C 1.54327 * 107.27084 * 181.09824 * 17 16 14 19 19 C 1.55162 * 102.94186 * 22.19506 * 18 17 16 20 20 O 1.42900 * 111.00519 * 82.57093 * 19 18 17 21 21 C 1.50703 * 111.03605 * 206.41204 * 19 18 17 22 22 H 1.07997 * 120.00263 * 356.79414 * 21 19 18 23 23 C 1.37878 * 119.99759 * 176.79511 * 21 19 18 24 24 N 1.31511 * 120.00099 * 0.02562 * 23 21 19 25 25 Si 1.86800 * 119.99916 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47018 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47037 * 120.00047 * 25 23 21 28 28 H 1.48495 * 109.47287 * 240.00371 * 25 23 21 29 29 C 1.47426 * 125.64990 * 180.02562 * 16 14 12 30 30 H 1.09003 * 109.47333 * 269.98475 * 1 2 3 31 31 H 1.09011 * 109.46972 * 29.98272 * 1 2 3 32 32 H 1.08993 * 109.47120 * 149.97962 * 1 2 3 33 33 H 1.08002 * 120.42142 * 359.97438 * 3 2 1 34 34 H 1.07999 * 119.61949 * 179.97438 * 4 3 2 35 35 H 1.07995 * 119.62073 * 180.28821 * 6 5 4 36 36 H 1.09001 * 109.47332 * 59.99408 * 10 8 7 37 37 H 1.08994 * 109.47402 * 179.97438 * 10 8 7 38 38 H 1.09009 * 109.46353 * 299.99890 * 10 8 7 39 39 H 0.96996 * 120.00013 * 27.27678 * 11 8 7 40 40 H 1.08994 * 109.88258 * 300.51712 * 17 16 14 41 41 H 1.09002 * 109.88144 * 61.68567 * 17 16 14 42 42 H 1.09002 * 110.71645 * 263.83678 * 18 17 16 43 43 H 1.08993 * 110.72435 * 140.55930 * 18 17 16 44 44 H 0.96697 * 113.99842 * 186.34824 * 20 19 18 45 45 H 0.96997 * 119.99973 * 180.02562 * 24 23 21 46 46 H 1.09007 * 110.36600 * 36.99144 * 29 16 14 47 47 H 1.09001 * 110.45674 * 274.72363 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2403 0.0001 -0.0016 6 6 3.5983 -1.1517 0.0041 7 6 2.2166 -1.1909 -0.0006 8 6 1.4908 -2.5116 -0.0001 9 1 0.5645 -2.4173 -0.5669 10 6 1.1686 -2.9160 1.4398 11 7 2.3386 -3.5350 -0.6168 12 6 1.7769 -4.5990 -1.2242 13 8 0.5690 -4.7090 -1.2606 14 6 2.6418 -5.6426 -1.8538 15 8 3.8497 -5.5322 -1.8177 16 7 2.0801 -6.7063 -2.4616 17 6 0.6373 -6.9641 -2.5772 18 6 0.4696 -8.3045 -3.3235 19 6 1.8334 -9.0061 -3.0883 20 8 1.8622 -9.6565 -1.8162 21 6 2.1390 -9.9802 -4.1969 22 1 1.4177 -10.1469 -4.9833 23 6 3.3393 -10.6585 -4.2072 24 7 4.2173 -10.4559 -3.2493 25 14 3.7177 -11.8665 -5.5809 26 1 2.5746 -11.9134 -6.5276 27 1 4.9396 -11.4286 -6.3023 28 1 3.9399 -13.2171 -5.0052 29 6 2.8108 -7.8049 -3.1195 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8897 -0.5141 33 1 1.6966 2.1378 -0.0004 34 1 4.1583 2.0754 -0.0010 35 1 4.1585 -2.0750 0.0078 36 1 0.5379 -2.1546 1.8987 37 1 0.6433 -3.8710 1.4402 38 1 2.0950 -3.0103 2.0066 39 1 3.3041 -3.4468 -0.5879 40 1 0.1926 -7.0344 -1.5846 41 1 0.1617 -6.1629 -3.1429 42 1 0.3014 -8.1352 -4.3871 43 1 -0.3435 -8.8875 -2.8913 44 1 2.7249 -10.0258 -1.5828 45 1 5.0619 -10.9329 -3.2567 46 1 3.7198 -8.0408 -2.5660 47 1 3.0524 -7.5391 -4.1486 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349222376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:03 Heat of formation + Delta-G solvation = -98.807062 kcal Electronic energy + Delta-G solvation = -30701.141821 eV Core-core repulsion = 26462.177351 eV Total energy + Delta-G solvation = -4238.964470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.09056 -41.35839 -40.03701 -38.90781 -37.28107 -36.07713 -34.93217 -34.21085 -32.61957 -31.96678 -30.69057 -29.72004 -28.79593 -27.72948 -25.97583 -25.12291 -23.91398 -23.00257 -21.91247 -21.55189 -20.97646 -19.20041 -18.91131 -18.29876 -17.65493 -17.31829 -17.25610 -17.04415 -16.67593 -16.27729 -16.08752 -15.94390 -15.50211 -15.38447 -14.91289 -14.69703 -14.66504 -14.49894 -14.07734 -13.92494 -13.84217 -13.61260 -13.51494 -13.47661 -13.34254 -13.15947 -12.87397 -12.78278 -12.62210 -12.54221 -12.35331 -12.20082 -12.10658 -12.09692 -11.25032 -10.78803 -10.62595 -10.57599 -10.43478 -10.37006 -10.32873 -10.00135 -9.66006 -8.26146 -6.42198 0.04962 0.23648 0.30012 1.20634 1.42325 1.45824 1.56292 2.07596 2.35715 2.45282 2.75866 3.00159 3.19246 3.31633 3.58849 3.76301 3.77382 3.85481 3.90455 4.06308 4.13845 4.14966 4.29532 4.32700 4.47433 4.57100 4.62127 4.65769 4.72987 4.74133 4.77036 4.82473 4.92216 4.95420 5.05377 5.10686 5.14243 5.17834 5.24595 5.32861 5.38023 5.42929 5.70950 5.74686 5.90589 6.05139 6.33161 6.55446 6.66792 6.86439 6.97332 7.28060 7.35754 8.80117 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022879 B = 0.002288 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.519536 B =12233.569481 C =12843.290830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.032 4.032 3 C -0.164 4.164 4 C 0.089 3.911 5 N -0.514 5.514 6 C 0.091 3.909 7 C -0.153 4.153 8 C 0.188 3.812 9 H 0.109 0.891 10 C -0.155 4.155 11 N -0.692 5.692 12 C 0.524 3.476 13 O -0.521 6.521 14 C 0.500 3.500 15 O -0.562 6.562 16 N -0.581 5.581 17 C 0.119 3.881 18 C -0.116 4.116 19 C 0.233 3.767 20 O -0.588 6.588 21 C -0.553 4.553 22 H 0.071 0.929 23 C 0.027 3.973 24 N -0.916 5.916 25 Si 0.965 3.035 26 H -0.264 1.264 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.103 3.897 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.170 0.830 34 H 0.181 0.819 35 H 0.148 0.852 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.413 0.587 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.375 0.625 45 H 0.270 0.730 46 H 0.056 0.944 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.143 23.173 7.593 25.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.040 4.040 3 C -0.183 4.183 4 C -0.067 4.067 5 N -0.223 5.223 6 C -0.066 4.066 7 C -0.156 4.156 8 C 0.085 3.915 9 H 0.126 0.874 10 C -0.213 4.213 11 N -0.347 5.347 12 C 0.304 3.696 13 O -0.397 6.397 14 C 0.283 3.717 15 O -0.442 6.442 16 N -0.312 5.312 17 C -0.003 4.003 18 C -0.153 4.153 19 C 0.193 3.807 20 O -0.396 6.396 21 C -0.591 4.591 22 H 0.089 0.911 23 C -0.174 4.174 24 N -0.555 5.555 25 Si 0.791 3.209 26 H -0.188 1.188 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.019 4.019 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.187 0.813 34 H 0.198 0.802 35 H 0.165 0.835 36 H 0.112 0.888 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.251 0.749 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.916 23.356 7.684 25.830 hybrid contribution 1.173 -1.178 -0.636 1.780 sum -6.743 22.178 7.048 24.229 Atomic orbital electron populations 1.21029 0.88144 1.04462 1.04395 1.20451 0.98223 0.91635 0.93680 1.22388 0.95158 0.99595 1.01200 1.23326 0.92944 0.96360 0.94038 1.67705 1.42135 0.99187 1.13294 1.22543 0.91563 0.96526 0.95957 1.20703 0.94998 0.95256 1.04620 1.19978 0.93366 0.82490 0.95695 0.87381 1.22145 1.02745 1.02730 0.93661 1.45955 1.11889 1.21563 1.55261 1.19709 0.87708 0.82851 0.79332 1.90715 1.14023 1.76451 1.58495 1.20233 0.87899 0.83104 0.80435 1.90710 1.15276 1.77590 1.60655 1.48685 1.10208 1.20758 1.51594 1.22186 0.79008 0.97782 1.01316 1.22731 0.97669 0.93930 1.00995 1.19866 0.90718 0.87701 0.82439 1.86106 1.38310 1.76623 1.38561 1.21798 1.02807 1.24646 1.09825 0.91114 1.25819 0.95565 0.97886 0.98159 1.69761 1.08888 1.42900 1.33959 0.85389 0.78115 0.78358 0.79055 1.18806 1.20794 1.20678 1.23104 0.97149 0.86239 0.95443 0.88489 0.88970 0.91007 0.81253 0.80249 0.83505 0.88764 0.92389 0.91951 0.74876 0.91016 0.89535 0.88905 0.89577 0.77509 0.92026 0.92584 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.67 71.24 0.69 -0.34 16 2 C -0.03 -0.43 5.92 -19.67 -0.12 -0.54 16 3 C -0.16 -1.88 9.82 22.36 0.22 -1.66 16 4 C 0.09 1.36 11.18 84.67 0.95 2.30 16 5 N -0.51 -11.20 10.36 -195.83 -2.03 -13.23 16 6 C 0.09 1.92 10.40 84.69 0.88 2.80 16 7 C -0.15 -2.75 5.06 -19.77 -0.10 -2.85 16 8 C 0.19 3.65 2.40 44.24 0.11 3.76 16 9 H 0.11 2.11 5.58 -2.38 -0.01 2.10 16 10 C -0.15 -2.62 9.49 71.98 0.68 -1.94 16 11 N -0.69 -17.57 4.97 -447.42 -2.22 -19.79 16 12 C 0.52 16.91 7.84 87.27 0.68 17.59 16 13 O -0.52 -17.23 13.75 -3.25 -0.04 -17.28 16 14 C 0.50 20.04 7.91 87.27 0.69 20.74 16 15 O -0.56 -25.05 16.73 -3.24 -0.05 -25.10 16 16 N -0.58 -24.44 3.33 -813.39 -2.71 -27.15 16 17 C 0.12 4.38 5.49 86.73 0.48 4.85 16 18 C -0.12 -4.53 6.13 31.79 0.19 -4.33 16 19 C 0.23 11.27 0.87 -10.15 -0.01 11.26 16 20 O -0.59 -30.34 13.15 -148.98 -1.96 -32.30 16 21 C -0.55 -28.40 8.26 25.60 0.21 -28.19 16 22 H 0.07 3.52 7.78 -2.91 -0.02 3.50 16 23 C 0.03 1.37 5.30 84.66 0.45 1.82 16 24 N -0.92 -49.10 10.72 21.45 0.23 -48.87 16 25 Si 0.97 41.33 29.54 68.60 2.03 43.36 16 26 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 27 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 28 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 29 C 0.10 4.97 5.50 86.85 0.48 5.45 16 30 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.09 0.47 8.10 -2.38 -0.02 0.45 16 32 H 0.07 0.72 6.14 -2.39 -0.01 0.71 16 33 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 34 H 0.18 1.65 8.06 -2.91 -0.02 1.62 16 35 H 0.15 3.06 6.16 -2.91 -0.02 3.05 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.41 10.30 5.80 -92.71 -0.54 9.76 16 40 H 0.07 2.64 7.58 -2.39 -0.02 2.62 16 41 H 0.09 2.82 7.69 -2.39 -0.02 2.80 16 42 H 0.09 3.34 8.03 -2.39 -0.02 3.32 16 43 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 44 H 0.38 20.18 7.32 -74.06 -0.54 19.64 16 45 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 46 H 0.06 3.05 7.47 -2.38 -0.02 3.04 16 47 H 0.06 2.86 8.03 -2.39 -0.02 2.84 16 Total: -1.00 -65.74 385.94 -0.33 -66.07 By element: Atomic # 1 Polarization: 43.61 SS G_CDS: -0.05 Total: 43.56 kcal Atomic # 6 Polarization: 24.24 SS G_CDS: 6.48 Total: 30.73 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -6.73 Total: -109.04 kcal Atomic # 8 Polarization: -72.62 SS G_CDS: -2.06 Total: -74.68 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -65.74 -0.33 -66.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349222376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.732 kcal (2) G-P(sol) polarization free energy of solvation -65.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds