Wall clock time and date at job start Wed Apr 1 2020 04:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34713 * 116.99774 * 2 1 4 4 O 1.21470 * 119.99902 * 0.02562 * 3 2 1 5 5 C 1.47740 * 119.99935 * 179.97438 * 3 2 1 6 6 C 1.39983 * 120.52747 * 353.79247 * 5 3 2 7 7 C 1.38963 * 118.21838 * 179.97438 * 6 5 3 8 8 N 1.40010 * 120.41411 * 180.02562 * 7 6 5 9 9 C 1.34776 * 119.99890 * 330.33602 * 8 7 6 10 10 O 1.21580 * 119.99945 * 354.18783 * 9 8 7 11 11 N 1.34774 * 119.99746 * 174.18496 * 9 8 7 12 12 C 1.46929 * 120.63342 * 4.28179 * 11 9 8 13 13 C 1.52760 * 109.00358 * 233.58303 * 12 11 9 14 14 C 1.53037 * 109.38725 * 305.58502 * 13 12 11 15 15 C 1.50701 * 109.45029 * 181.25953 * 14 13 12 16 16 H 1.08001 * 119.99554 * 239.93374 * 15 14 13 17 17 C 1.37877 * 120.00327 * 59.93688 * 15 14 13 18 18 N 1.31512 * 119.99676 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99983 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46958 * 90.00136 * 19 17 15 21 21 H 1.48498 * 109.47117 * 210.00253 * 19 17 15 22 22 H 1.48502 * 109.46960 * 330.00251 * 19 17 15 23 23 C 1.53038 * 109.53656 * 61.24026 * 14 13 12 24 24 C 1.46928 * 120.62841 * 184.55546 * 11 9 8 25 25 C 1.38991 * 119.16920 * 359.97438 * 7 6 5 26 26 N 1.31863 * 120.98750 * 0.27810 * 25 7 6 27 27 C 1.31678 * 121.96897 * 359.43091 * 26 25 7 28 28 C 1.50691 * 119.64642 * 180.29247 * 27 26 25 29 29 H 1.09000 * 109.46949 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47361 * 299.99659 * 1 2 3 31 31 H 1.08998 * 109.47367 * 59.99740 * 1 2 3 32 32 H 1.08002 * 120.88644 * 0.02562 * 6 5 3 33 33 H 0.97004 * 120.00206 * 150.34068 * 8 7 6 34 34 H 1.08994 * 109.58431 * 353.41262 * 12 11 9 35 35 H 1.09001 * 109.59057 * 113.84070 * 12 11 9 36 36 H 1.09005 * 109.56376 * 185.54920 * 13 12 11 37 37 H 1.09006 * 109.39129 * 65.51429 * 13 12 11 38 38 H 1.09010 * 109.45918 * 301.22298 * 14 13 12 39 39 H 0.97005 * 119.99773 * 180.02562 * 18 17 15 40 40 H 1.09004 * 109.49635 * 178.68436 * 23 14 13 41 41 H 1.09001 * 109.52392 * 58.61158 * 23 14 13 42 42 H 1.08999 * 109.58663 * 246.15929 * 24 11 9 43 43 H 1.09000 * 109.58492 * 6.44285 * 24 11 9 44 44 H 1.07994 * 119.50190 * 179.97438 * 25 7 6 45 45 H 1.09000 * 109.47193 * 262.85581 * 28 27 26 46 46 H 1.09002 * 109.47306 * 22.85663 * 28 27 26 47 47 H 1.09001 * 109.47385 * 142.85880 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5389 1.2777 0.0006 6 6 4.3117 0.1179 0.1315 7 6 5.6953 0.2461 0.1254 8 7 6.5124 -0.8837 0.2528 9 6 6.0789 -1.9540 0.9477 10 8 5.0252 -1.9004 1.5519 11 7 6.8133 -3.0838 0.9727 12 6 8.1317 -3.1341 0.3261 13 6 8.1664 -4.3155 -0.6417 14 6 7.7828 -5.5952 0.1048 15 6 7.8465 -6.7664 -0.8413 16 1 6.9616 -7.3556 -1.0316 17 6 9.0345 -7.0858 -1.4641 18 7 10.1121 -6.3686 -1.2320 19 14 9.1135 -8.5380 -2.6364 20 1 8.8018 -8.0796 -4.0140 21 1 10.4774 -9.1246 -2.6066 22 1 8.1240 -9.5643 -2.2204 23 6 6.3610 -5.4604 0.6545 24 6 6.3082 -4.2903 1.6419 25 6 6.2580 1.5098 -0.0097 26 7 5.4991 2.5819 -0.1260 27 6 4.1844 2.5083 -0.1310 28 6 3.3679 3.7668 -0.2735 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 3.8449 -0.8507 0.2336 33 1 7.3906 -0.8961 -0.1590 34 1 8.3050 -2.2086 -0.2230 35 1 8.9054 -3.2626 1.0831 36 1 9.1703 -4.4212 -1.0529 37 1 7.4581 -4.1407 -1.4517 38 1 8.4772 -5.7565 0.9295 39 1 10.9478 -6.5931 -1.6705 40 1 6.0799 -6.3811 1.1660 41 1 5.6689 -5.2749 -0.1669 42 1 6.9301 -4.5150 2.5084 43 1 5.2795 -4.1265 1.9630 44 1 7.3327 1.6157 -0.0147 45 1 3.0537 4.1097 0.7124 46 1 3.9707 4.5389 -0.7516 47 1 2.4885 3.5622 -0.8842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364467035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:22 Heat of formation + Delta-G solvation = -67.414928 kcal Electronic energy + Delta-G solvation = -30570.087160 eV Core-core repulsion = 26332.483954 eV Total energy + Delta-G solvation = -4237.603205 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.37716 -40.49413 -39.54527 -37.31985 -36.70951 -35.27234 -33.73306 -32.84273 -32.06541 -30.93491 -30.20818 -28.29373 -27.30078 -26.10186 -24.95946 -23.44021 -22.67100 -22.35941 -21.46559 -20.30860 -19.32400 -18.62575 -17.63188 -17.45315 -16.70497 -16.47648 -16.46039 -16.24464 -16.01761 -15.28837 -14.85662 -14.67552 -14.56828 -13.90139 -13.88235 -13.50344 -13.40525 -13.23829 -13.00656 -12.83898 -12.79600 -12.66822 -12.44357 -12.31619 -12.19329 -11.74809 -11.43480 -11.03619 -11.00680 -10.93191 -10.72931 -10.65155 -10.49396 -10.32602 -10.10000 -9.98012 -9.74698 -9.58003 -9.28436 -9.06515 -8.51919 -8.43055 -8.05592 -6.11926 -4.17879 0.28176 0.99278 2.27323 2.43306 2.56915 3.14256 3.22747 3.30375 3.33564 3.60032 3.81238 4.09972 4.34129 4.36798 4.53243 4.64428 4.88178 4.89437 4.96759 5.04929 5.17089 5.31767 5.33280 5.53804 5.56579 5.59427 5.62630 5.76911 5.82159 5.91685 5.96389 5.97597 6.04650 6.11757 6.26189 6.30764 6.52729 6.55638 6.64313 6.83695 6.98370 7.02568 7.21309 7.49036 7.56674 7.62622 7.80949 7.90694 7.95263 8.30633 8.54620 8.85545 9.47849 10.93704 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.002403 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.057369 B =11649.057706 C =12367.226892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.349 6.349 3 C 0.518 3.482 4 O -0.500 6.500 5 C -0.164 4.164 6 C -0.023 4.023 7 C 0.112 3.888 8 N -0.683 5.683 9 C 0.704 3.296 10 O -0.585 6.585 11 N -0.608 5.608 12 C 0.107 3.893 13 C -0.125 4.125 14 C 0.049 3.951 15 C -0.512 4.512 16 H 0.055 0.945 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.125 4.125 24 C 0.128 3.872 25 C 0.107 3.893 26 N -0.467 5.467 27 C 0.166 3.834 28 C -0.106 4.106 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.168 0.832 33 H 0.412 0.588 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.040 0.960 38 H 0.029 0.971 39 H 0.261 0.739 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.166 0.834 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.136 15.362 2.116 18.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.265 6.265 3 C 0.363 3.637 4 O -0.390 6.390 5 C -0.168 4.168 6 C -0.051 4.051 7 C 0.013 3.987 8 N -0.333 5.333 9 C 0.406 3.594 10 O -0.464 6.464 11 N -0.344 5.344 12 C -0.015 4.015 13 C -0.164 4.164 14 C 0.031 3.969 15 C -0.550 4.550 16 H 0.074 0.926 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.163 4.163 24 C 0.006 3.994 25 C -0.053 4.053 26 N -0.176 5.176 27 C 0.026 3.974 28 C -0.163 4.163 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.185 0.815 33 H 0.252 0.748 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.183 0.817 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.482 16.361 2.443 19.584 hybrid contribution 0.249 -1.760 -0.813 1.955 sum -10.234 14.601 1.629 17.904 Atomic orbital electron populations 1.23311 0.75724 1.04028 1.02543 1.86612 1.23705 1.32232 1.83917 1.20865 0.88552 0.81597 0.72687 1.90787 1.66769 1.35456 1.45985 1.19828 0.90461 0.95073 1.11402 1.22106 0.92081 0.99937 0.91022 1.18492 0.90811 0.87588 1.01808 1.42813 1.20609 1.13849 1.56017 1.15834 0.83801 0.80224 0.79578 1.90882 1.23941 1.82597 1.48937 1.47505 1.19491 1.10140 1.57215 1.21919 0.82850 1.00022 0.96753 1.21973 1.04718 0.93171 0.96514 1.18625 0.90139 0.92884 0.95290 1.21195 0.95523 1.12550 1.25750 0.92650 1.24955 0.95701 0.96578 0.96712 1.69819 1.00370 1.39375 1.43562 0.86609 0.77315 0.82886 0.81299 1.20732 1.21222 1.19931 1.22039 1.01138 0.95428 0.97674 1.21679 0.99585 0.83148 0.94986 1.22821 1.00655 0.85784 0.96031 1.67657 1.05142 1.30901 1.13891 1.21384 0.89826 0.93937 0.92203 1.20988 0.98916 0.92542 1.03827 0.87813 0.91727 0.91752 0.81495 0.74793 0.92530 0.91396 0.87562 0.94152 0.95340 0.92923 0.91849 0.92866 0.92023 0.90048 0.81691 0.89966 0.90904 0.88582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.35 -4.29 9.91 -40.53 -0.40 -4.69 16 3 C 0.52 6.73 7.83 34.61 0.27 7.00 16 4 O -0.50 -6.67 13.17 -19.24 -0.25 -6.92 16 5 C -0.16 -2.15 5.89 -104.86 -0.62 -2.77 16 6 C -0.02 -0.33 8.34 -38.66 -0.32 -0.65 16 7 C 0.11 1.43 6.36 -83.57 -0.53 0.90 16 8 N -0.68 -8.75 5.28 -14.16 -0.07 -8.82 16 9 C 0.70 11.33 8.08 -86.92 -0.70 10.63 16 10 O -0.58 -10.86 13.28 5.29 0.07 -10.79 16 11 N -0.61 -9.89 2.98 -178.76 -0.53 -10.43 16 12 C 0.11 1.68 6.40 -3.93 -0.03 1.65 16 13 C -0.13 -2.53 5.14 -26.83 -0.14 -2.66 16 14 C 0.05 1.09 2.07 -91.73 -0.19 0.90 16 15 C -0.51 -13.02 8.56 -34.44 -0.29 -13.31 16 16 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 17 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 18 N -0.89 -23.42 11.31 55.43 0.63 -22.79 16 19 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 C -0.12 -2.36 5.30 -26.61 -0.14 -2.51 16 24 C 0.13 2.15 6.42 -3.71 -0.02 2.13 16 25 C 0.11 1.19 11.10 -17.26 -0.19 0.99 16 26 N -0.47 -5.72 10.25 -8.99 -0.09 -5.81 16 27 C 0.17 2.06 6.82 -82.16 -0.56 1.50 16 28 C -0.11 -1.10 8.83 36.00 0.32 -0.78 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.17 2.61 5.92 -52.49 -0.31 2.30 16 33 H 0.41 4.26 6.27 -40.82 -0.26 4.01 16 34 H 0.06 0.71 5.57 -51.93 -0.29 0.42 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.11 2.41 6.03 -51.93 -0.31 2.10 16 37 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.08 1.36 7.03 -51.93 -0.36 1.00 16 44 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.10 1.03 5.91 -51.93 -0.31 0.73 16 LS Contribution 380.42 15.07 5.73 5.73 Total: -1.00 -29.78 380.42 -8.58 -38.35 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.46 Total: 5.10 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -2.18 Total: 5.90 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.07 Total: -47.86 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.58 Total: -22.40 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.78 -8.58 -38.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364467035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.061 kcal (2) G-P(sol) polarization free energy of solvation -29.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds