Wall clock time and date at job start Wed Apr 1 2020 04:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34713 * 116.99774 * 2 1 4 4 O 1.21470 * 119.99902 * 0.02562 * 3 2 1 5 5 C 1.47740 * 119.99935 * 179.97438 * 3 2 1 6 6 C 1.39983 * 120.52747 * 353.79247 * 5 3 2 7 7 C 1.38963 * 118.21838 * 179.97438 * 6 5 3 8 8 N 1.40010 * 120.41411 * 180.02562 * 7 6 5 9 9 C 1.34776 * 119.99890 * 330.33602 * 8 7 6 10 10 O 1.21580 * 119.99945 * 354.18783 * 9 8 7 11 11 N 1.34774 * 119.99746 * 174.18496 * 9 8 7 12 12 C 1.46929 * 120.63342 * 4.28179 * 11 9 8 13 13 C 1.52760 * 109.00358 * 233.58303 * 12 11 9 14 14 C 1.53037 * 109.38725 * 305.58502 * 13 12 11 15 15 C 1.50701 * 109.45029 * 181.25953 * 14 13 12 16 16 H 1.08001 * 119.99554 * 239.93374 * 15 14 13 17 17 C 1.37877 * 120.00327 * 59.93688 * 15 14 13 18 18 N 1.31512 * 119.99676 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99983 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46958 * 90.00136 * 19 17 15 21 21 H 1.48498 * 109.47117 * 210.00253 * 19 17 15 22 22 H 1.48502 * 109.46960 * 330.00251 * 19 17 15 23 23 C 1.53038 * 109.53656 * 61.24026 * 14 13 12 24 24 C 1.46928 * 120.62841 * 184.55546 * 11 9 8 25 25 C 1.38991 * 119.16920 * 359.97438 * 7 6 5 26 26 N 1.31863 * 120.98750 * 0.27810 * 25 7 6 27 27 C 1.31678 * 121.96897 * 359.43091 * 26 25 7 28 28 C 1.50691 * 119.64642 * 180.29247 * 27 26 25 29 29 H 1.09000 * 109.46949 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47361 * 299.99659 * 1 2 3 31 31 H 1.08998 * 109.47367 * 59.99740 * 1 2 3 32 32 H 1.08002 * 120.88644 * 0.02562 * 6 5 3 33 33 H 0.97004 * 120.00206 * 150.34068 * 8 7 6 34 34 H 1.08994 * 109.58431 * 353.41262 * 12 11 9 35 35 H 1.09001 * 109.59057 * 113.84070 * 12 11 9 36 36 H 1.09005 * 109.56376 * 185.54920 * 13 12 11 37 37 H 1.09006 * 109.39129 * 65.51429 * 13 12 11 38 38 H 1.09010 * 109.45918 * 301.22298 * 14 13 12 39 39 H 0.97005 * 119.99773 * 180.02562 * 18 17 15 40 40 H 1.09004 * 109.49635 * 178.68436 * 23 14 13 41 41 H 1.09001 * 109.52392 * 58.61158 * 23 14 13 42 42 H 1.08999 * 109.58663 * 246.15929 * 24 11 9 43 43 H 1.09000 * 109.58492 * 6.44285 * 24 11 9 44 44 H 1.07994 * 119.50190 * 179.97438 * 25 7 6 45 45 H 1.09000 * 109.47193 * 262.85581 * 28 27 26 46 46 H 1.09002 * 109.47306 * 22.85663 * 28 27 26 47 47 H 1.09001 * 109.47385 * 142.85880 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5389 1.2777 0.0006 6 6 4.3117 0.1179 0.1315 7 6 5.6953 0.2461 0.1254 8 7 6.5124 -0.8837 0.2528 9 6 6.0789 -1.9540 0.9477 10 8 5.0252 -1.9004 1.5519 11 7 6.8133 -3.0838 0.9727 12 6 8.1317 -3.1341 0.3261 13 6 8.1664 -4.3155 -0.6417 14 6 7.7828 -5.5952 0.1048 15 6 7.8465 -6.7664 -0.8413 16 1 6.9616 -7.3556 -1.0316 17 6 9.0345 -7.0858 -1.4641 18 7 10.1121 -6.3686 -1.2320 19 14 9.1135 -8.5380 -2.6364 20 1 8.8018 -8.0796 -4.0140 21 1 10.4774 -9.1246 -2.6066 22 1 8.1240 -9.5643 -2.2204 23 6 6.3610 -5.4604 0.6545 24 6 6.3082 -4.2903 1.6419 25 6 6.2580 1.5098 -0.0097 26 7 5.4991 2.5819 -0.1260 27 6 4.1844 2.5083 -0.1310 28 6 3.3679 3.7668 -0.2735 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 3.8449 -0.8507 0.2336 33 1 7.3906 -0.8961 -0.1590 34 1 8.3050 -2.2086 -0.2230 35 1 8.9054 -3.2626 1.0831 36 1 9.1703 -4.4212 -1.0529 37 1 7.4581 -4.1407 -1.4517 38 1 8.4772 -5.7565 0.9295 39 1 10.9478 -6.5931 -1.6705 40 1 6.0799 -6.3811 1.1660 41 1 5.6689 -5.2749 -0.1669 42 1 6.9301 -4.5150 2.5084 43 1 5.2795 -4.1265 1.9630 44 1 7.3327 1.6157 -0.0147 45 1 3.0537 4.1097 0.7124 46 1 3.9707 4.5389 -0.7516 47 1 2.4885 3.5622 -0.8842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364467035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:21 Heat of formation + Delta-G solvation = -84.045927 kcal Electronic energy + Delta-G solvation = -30570.808334 eV Core-core repulsion = 26332.483954 eV Total energy + Delta-G solvation = -4238.324379 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.40175 -41.59545 -40.58907 -38.71753 -37.67933 -36.41464 -35.40502 -33.82197 -33.39722 -32.30552 -31.64960 -29.16467 -28.34905 -27.60997 -25.89343 -24.93255 -24.04967 -23.50379 -22.54832 -21.62054 -20.60194 -19.84887 -18.84480 -18.44388 -18.25761 -17.61859 -17.36291 -17.36076 -17.12569 -16.61086 -16.42931 -15.92202 -15.61875 -15.22790 -14.91824 -14.74798 -14.63397 -14.42462 -14.29044 -14.22598 -14.08063 -13.66307 -13.47867 -13.29504 -13.18452 -13.04752 -12.94938 -12.80423 -12.47008 -12.16016 -12.00402 -11.99571 -11.84884 -11.62701 -11.48067 -11.33945 -11.00404 -10.96191 -10.81053 -10.63974 -10.38564 -9.72661 -9.22000 -8.07344 -6.19323 -0.66450 -0.01873 1.29949 1.40945 1.41616 1.44704 1.52453 1.58492 1.93957 2.44837 2.61458 2.64936 3.19812 3.23085 3.43616 3.59963 3.67995 3.93587 4.07777 4.15024 4.23441 4.26821 4.31887 4.35009 4.46579 4.58488 4.64750 4.67761 4.69089 4.73100 4.75983 4.88000 4.88562 4.98895 5.00860 5.09406 5.21078 5.21893 5.36356 5.43861 5.45159 5.58714 5.66078 5.87001 6.01588 6.15506 6.41348 6.54815 6.68414 6.73311 6.90032 7.31779 7.48328 8.95866 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.002403 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.057369 B =11649.057706 C =12367.226892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.516 3.484 4 O -0.509 6.509 5 C -0.176 4.176 6 C -0.035 4.035 7 C 0.099 3.901 8 N -0.668 5.668 9 C 0.704 3.296 10 O -0.611 6.611 11 N -0.611 5.611 12 C 0.117 3.883 13 C -0.116 4.116 14 C 0.045 3.955 15 C -0.533 4.533 16 H 0.046 0.954 17 C 0.020 3.980 18 N -0.910 5.910 19 Si 0.944 3.056 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.274 1.274 23 C -0.114 4.114 24 C 0.135 3.865 25 C 0.126 3.874 26 N -0.474 5.474 27 C 0.165 3.835 28 C -0.102 4.102 29 H 0.126 0.874 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.147 0.853 33 H 0.425 0.575 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.028 0.972 38 H 0.006 0.994 39 H 0.261 0.739 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.204 0.796 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.812 16.773 1.943 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.280 6.280 3 C 0.362 3.638 4 O -0.399 6.399 5 C -0.180 4.180 6 C -0.063 4.063 7 C 0.001 3.999 8 N -0.319 5.319 9 C 0.406 3.594 10 O -0.491 6.491 11 N -0.346 5.346 12 C -0.005 4.005 13 C -0.155 4.155 14 C 0.027 3.973 15 C -0.571 4.571 16 H 0.064 0.936 17 C -0.179 4.179 18 N -0.549 5.549 19 Si 0.771 3.229 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.199 1.199 23 C -0.152 4.152 24 C 0.013 3.987 25 C -0.035 4.035 26 N -0.183 5.183 27 C 0.026 3.974 28 C -0.158 4.158 29 H 0.144 0.856 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.164 0.836 33 H 0.268 0.732 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.047 0.953 38 H 0.024 0.976 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.220 0.780 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.162 17.793 2.254 20.614 hybrid contribution 0.095 -2.202 -0.767 2.334 sum -10.066 15.591 1.487 18.618 Atomic orbital electron populations 1.23611 0.73816 1.05747 1.03130 1.86601 1.25720 1.32014 1.83681 1.20899 0.88647 0.81718 0.72561 1.90771 1.66972 1.35630 1.46575 1.19907 0.90676 0.95229 1.12152 1.21980 0.92974 0.99352 0.91993 1.18596 0.90331 0.88163 1.02814 1.42559 1.21051 1.13025 1.55286 1.15904 0.83294 0.80653 0.79572 1.90875 1.25039 1.83119 1.50115 1.47446 1.19659 1.10151 1.57328 1.21799 0.82778 0.99774 0.96169 1.21719 1.02650 0.94184 0.96910 1.18607 0.91459 0.93071 0.94209 1.21545 0.95298 1.13736 1.26531 0.93617 1.25570 0.95608 0.98680 0.98067 1.69921 1.00560 1.40281 1.44175 0.85774 0.77175 0.80362 0.79614 1.20438 1.20949 1.19906 1.21874 0.98773 0.96782 0.97804 1.21540 1.00092 0.82562 0.94554 1.23358 1.02199 0.84514 0.93392 1.67774 1.05034 1.31205 1.14293 1.21707 0.90236 0.94250 0.91214 1.20988 0.98691 0.92072 1.04073 0.85620 0.91334 0.90985 0.83578 0.73233 0.88724 0.90816 0.90000 0.95313 0.97587 0.92940 0.91677 0.93934 0.90945 0.89840 0.77968 0.89557 0.89433 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.36 -8.97 9.91 -56.22 -0.56 -9.53 16 3 C 0.52 13.35 7.83 70.33 0.55 13.90 16 4 O -0.51 -13.35 13.17 19.93 0.26 -13.08 16 5 C -0.18 -4.54 5.89 -20.02 -0.12 -4.65 16 6 C -0.03 -0.96 8.34 22.87 0.19 -0.77 16 7 C 0.10 2.35 6.36 38.19 0.24 2.59 16 8 N -0.67 -15.60 5.28 -316.97 -1.67 -17.27 16 9 C 0.70 21.65 8.08 179.06 1.45 23.09 16 10 O -0.61 -22.33 13.28 -3.97 -0.05 -22.38 16 11 N -0.61 -19.01 2.98 -837.75 -2.49 -21.50 16 12 C 0.12 3.47 6.40 86.22 0.55 4.02 16 13 C -0.12 -4.65 5.14 30.53 0.16 -4.50 16 14 C 0.05 2.03 2.07 -11.51 -0.02 2.00 16 15 C -0.53 -27.51 8.56 25.60 0.22 -27.29 16 16 H 0.05 2.38 7.74 -2.91 -0.02 2.36 16 17 C 0.02 1.03 5.30 84.66 0.45 1.48 16 18 N -0.91 -48.07 11.31 21.45 0.24 -47.83 16 19 Si 0.94 41.53 29.54 68.60 2.03 43.56 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 C -0.11 -4.34 5.30 30.67 0.16 -4.18 16 24 C 0.14 4.44 6.42 86.36 0.55 4.99 16 25 C 0.13 2.40 11.10 84.87 0.94 3.34 16 26 N -0.47 -10.45 10.25 -182.36 -1.87 -12.31 16 27 C 0.16 3.84 6.82 42.90 0.29 4.13 16 28 C -0.10 -1.95 8.83 71.23 0.63 -1.32 16 29 H 0.13 1.42 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.15 4.66 5.92 -2.91 -0.02 4.64 16 33 H 0.43 7.38 6.27 -92.71 -0.58 6.80 16 34 H 0.09 2.07 5.57 -2.39 -0.01 2.06 16 35 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.08 3.73 6.03 -2.38 -0.01 3.72 16 37 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.01 0.29 8.14 -2.38 -0.02 0.28 16 39 H 0.26 13.24 8.31 -92.70 -0.77 12.47 16 40 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.08 2.74 7.03 -2.39 -0.02 2.72 16 44 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 45 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.09 1.87 5.91 -2.39 -0.01 1.86 16 Total: -1.00 -64.66 380.42 3.76 -60.90 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.43 Total: 20.94 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 7.44 Total: 18.52 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -5.79 Total: -98.92 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -0.35 Total: -44.99 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -64.66 3.76 -60.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364467035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.150 kcal (2) G-P(sol) polarization free energy of solvation -64.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds