Wall clock time and date at job start Wed Apr 1 2020 05:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 110.21768 * 2 1 4 4 N 1.46497 * 109.47063 * 301.92567 * 3 2 1 5 5 C 1.34774 * 119.99758 * 179.97438 * 4 3 2 6 6 O 1.21585 * 120.00075 * 0.02562 * 5 4 3 7 7 N 1.34781 * 119.99883 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99839 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.47074 * 180.02562 * 8 7 5 10 10 C 1.38322 * 119.96857 * 90.00078 * 9 8 7 11 11 C 1.38275 * 120.13916 * 179.97438 * 10 9 8 12 12 C 1.38116 * 120.07038 * 359.97438 * 11 10 9 13 13 C 1.38852 * 119.93228 * 0.02562 * 12 11 10 14 14 O 1.35751 * 120.07364 * 179.97438 * 13 12 11 15 15 C 1.34832 * 116.99677 * 354.48505 * 14 13 12 16 16 H 1.07999 * 120.00031 * 5.06419 * 15 14 13 17 17 C 1.38656 * 120.00253 * 185.05374 * 15 14 13 18 18 N 1.31556 * 120.00299 * 180.02562 * 17 15 14 19 19 Si 1.86810 * 119.99731 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47118 * 89.99581 * 19 17 15 21 21 H 1.48499 * 109.47020 * 209.99432 * 19 17 15 22 22 H 1.48497 * 109.46985 * 329.99761 * 19 17 15 23 23 C 1.38082 * 119.96472 * 269.97922 * 9 8 7 24 24 C 1.54485 * 110.24492 * 121.92982 * 2 1 3 25 25 C 1.54629 * 101.76581 * 93.66976 * 24 2 1 26 26 C 1.51283 * 104.19580 * 24.79891 * 25 24 2 27 27 O 1.21284 * 124.94438 * 163.74825 * 26 25 24 28 28 N 1.34421 * 110.11384 * 343.74649 * 26 25 24 29 29 H 1.09007 * 109.47050 * 59.29657 * 1 2 3 30 30 H 1.08995 * 109.47599 * 179.29986 * 1 2 3 31 31 H 1.08994 * 109.47236 * 299.30307 * 1 2 3 32 32 H 1.09006 * 109.46723 * 181.92840 * 3 2 1 33 33 H 1.08996 * 109.46979 * 61.93371 * 3 2 1 34 34 H 0.97000 * 120.00061 * 0.02562 * 4 3 2 35 35 H 0.97000 * 119.99935 * 0.02562 * 7 5 4 36 36 H 1.08999 * 109.47706 * 60.00467 * 8 7 5 37 37 H 1.09003 * 109.47682 * 299.99989 * 8 7 5 38 38 H 1.08000 * 119.92941 * 359.95649 * 10 9 8 39 39 H 1.08009 * 119.96415 * 179.72072 * 11 10 9 40 40 H 1.08000 * 120.03374 * 179.97438 * 12 11 10 41 41 H 0.97002 * 120.00007 * 180.02562 * 18 17 15 42 42 H 1.08003 * 120.03568 * 359.97438 * 23 9 8 43 43 H 1.09000 * 110.97193 * 211.79082 * 24 2 1 44 44 H 1.08997 * 110.96967 * 335.51589 * 24 2 1 45 45 H 1.08995 * 110.48728 * 143.47601 * 25 24 2 46 46 H 1.09002 * 110.48976 * 265.99351 * 25 24 2 47 47 H 0.97006 * 124.35129 * 179.57195 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4357 0.0000 4 7 1.5421 2.1464 -1.1723 5 6 1.8774 3.4350 -1.3810 6 8 2.6090 4.0075 -0.5966 7 7 1.4017 4.0889 -2.4592 8 6 1.7666 5.4894 -2.6864 9 6 1.1078 5.9817 -3.9492 10 6 -0.1480 6.5589 -3.8936 11 6 -0.7555 7.0123 -5.0501 12 6 -0.1094 6.8905 -6.2647 13 6 1.1513 6.3116 -6.3239 14 8 1.7887 6.1899 -7.5163 15 6 1.0982 6.5455 -8.6184 16 1 0.1160 6.9840 -8.5223 17 6 1.6494 6.3484 -9.8754 18 7 0.9759 6.6958 -10.9508 19 14 3.3483 5.5896 -10.0418 20 1 3.2236 4.1129 -10.1379 21 1 4.0057 6.1115 -11.2668 22 1 4.1659 5.9410 -8.8531 23 6 1.7587 5.8565 -5.1605 24 6 2.0645 -0.7666 1.2301 25 6 2.2646 -2.1874 0.6537 26 6 2.4538 -1.9625 -0.8303 27 8 2.9124 -2.7768 -1.6033 28 7 2.0396 -0.7290 -1.1674 29 1 -0.3633 0.5248 -0.8837 30 1 -0.3634 -1.0275 -0.0126 31 1 -0.3633 0.5029 0.8961 32 1 3.1481 1.4217 -0.0346 33 1 1.7306 1.9437 0.9068 34 1 0.9581 1.6897 -1.7978 35 1 0.8177 3.6323 -3.0848 36 1 2.8490 5.5715 -2.7851 37 1 1.4319 6.0936 -1.8431 38 1 -0.6552 6.6554 -2.9450 39 1 -1.7381 7.4584 -5.0040 40 1 -0.5846 7.2444 -7.1676 41 1 1.3613 6.5576 -11.8302 42 1 2.7395 5.4065 -5.2033 43 1 3.0112 -0.3468 1.5703 44 1 1.3305 -0.7716 2.0358 45 1 3.1508 -2.6528 1.0851 46 1 1.3835 -2.8019 0.8391 47 1 2.0735 -0.3669 -2.0667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364529479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:42 Heat of formation + Delta-G solvation = -67.871678 kcal Electronic energy + Delta-G solvation = -29245.327242 eV Core-core repulsion = 25007.704231 eV Total energy + Delta-G solvation = -4237.623011 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.25460 -40.02494 -39.26649 -37.72115 -37.02454 -34.78853 -34.50574 -32.47476 -31.90272 -31.35859 -30.50212 -29.43366 -27.51108 -25.91261 -25.16529 -24.26683 -21.89530 -21.52209 -21.10461 -20.75578 -20.59456 -18.85198 -17.85544 -17.54765 -17.01286 -16.69413 -16.39102 -15.86485 -15.44878 -15.28193 -14.95315 -14.75988 -14.60269 -14.32698 -14.27731 -14.00560 -13.87397 -13.50348 -13.45084 -13.31688 -13.05336 -12.95304 -12.60895 -12.60026 -12.44972 -12.23186 -12.03195 -11.61488 -11.49997 -11.48001 -10.97994 -10.87606 -10.83527 -10.37608 -10.28568 -10.23154 -9.65965 -9.51126 -9.49476 -8.96479 -8.94218 -8.38971 -7.52415 -6.49441 -4.16944 1.71730 2.10444 2.18657 2.58876 2.84368 3.09755 3.17201 3.21212 3.35454 3.71166 3.80526 4.03979 4.12980 4.17128 4.28050 4.42152 4.46145 4.62322 4.72465 4.98570 5.00313 5.05766 5.07719 5.11323 5.15620 5.29646 5.36730 5.37251 5.39257 5.59008 5.61171 5.70880 5.78525 5.96852 6.10260 6.10541 6.34319 6.37799 6.40278 6.56895 6.63134 6.70574 6.95863 7.07217 7.16439 7.45599 7.69437 7.81954 7.84431 7.94082 8.45258 8.85368 9.46056 10.57835 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011757 B = 0.002092 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.059918 B =13380.121967 C =14907.203318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 C 0.139 3.861 4 N -0.751 5.751 5 C 0.704 3.296 6 O -0.592 6.592 7 N -0.736 5.736 8 C 0.187 3.813 9 C -0.076 4.076 10 C -0.186 4.186 11 C -0.078 4.078 12 C -0.212 4.212 13 C 0.156 3.844 14 O -0.215 6.215 15 C -0.392 4.392 16 H 0.107 0.893 17 C 0.064 3.936 18 N -0.877 5.877 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.259 1.259 23 C -0.170 4.170 24 C -0.120 4.120 25 C -0.155 4.155 26 C 0.520 3.480 27 O -0.533 6.533 28 N -0.723 5.723 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.395 0.605 35 H 0.399 0.601 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.134 0.866 41 H 0.280 0.720 42 H 0.118 0.882 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.886 -12.918 25.084 28.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.057 3.943 3 C 0.014 3.986 4 N -0.408 5.408 5 C 0.404 3.596 6 O -0.470 6.470 7 N -0.391 5.391 8 C 0.064 3.936 9 C -0.076 4.076 10 C -0.205 4.205 11 C -0.096 4.096 12 C -0.231 4.231 13 C 0.103 3.897 14 O -0.120 6.120 15 C -0.467 4.467 16 H 0.124 0.876 17 C -0.139 4.139 18 N -0.514 5.514 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.190 4.190 24 C -0.159 4.159 25 C -0.196 4.196 26 C 0.306 3.694 27 O -0.409 6.409 28 N -0.379 5.379 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.229 0.771 35 H 0.233 0.767 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.152 0.848 41 H 0.091 0.909 42 H 0.136 0.864 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -1.711 -12.909 25.205 28.370 hybrid contribution -0.126 -0.349 -1.434 1.481 sum -1.837 -13.257 23.771 27.280 Atomic orbital electron populations 1.22202 0.93003 1.03048 1.03391 1.21346 0.94880 0.91528 0.86564 1.21508 0.99356 0.88912 0.88835 1.45089 1.55246 1.11556 1.28941 1.15909 0.80620 0.81017 0.82035 1.90931 1.41191 1.67401 1.47516 1.45266 1.53857 1.13594 1.26344 1.20005 0.99248 0.79679 0.94699 1.19269 0.95061 1.00432 0.92871 1.20549 0.95920 1.06238 0.97820 1.20808 0.98720 0.97906 0.92172 1.21366 0.96648 1.06233 0.98885 1.19069 0.90891 0.93342 0.86362 1.83580 1.40510 1.75668 1.12236 1.20757 1.02676 1.41681 0.81582 0.87582 1.24474 0.99516 0.96321 0.93618 1.69641 1.38162 1.45527 0.98088 0.86186 0.82896 0.79580 0.78288 1.19853 1.20696 1.18323 1.20096 1.01482 1.07330 0.90123 1.22663 1.03257 0.93753 0.96200 1.22357 1.05392 0.98518 0.93299 1.20889 0.76049 0.81384 0.91032 1.90791 1.44998 1.47523 1.57565 1.46413 1.64321 1.15879 1.11294 0.91776 0.91552 0.90493 0.90708 0.89909 0.77078 0.76715 0.90992 0.90955 0.87280 0.86977 0.84835 0.90942 0.86389 0.89184 0.88447 0.87773 0.87624 0.75045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 8.61 37.16 0.32 -0.21 16 2 C 0.14 0.62 0.84 -130.90 -0.11 0.51 16 3 C 0.14 0.89 4.76 -4.04 -0.02 0.87 16 4 N -0.75 -5.77 5.14 -65.23 -0.33 -6.11 16 5 C 0.70 8.34 8.57 -86.92 -0.74 7.60 16 6 O -0.59 -9.35 16.34 5.29 0.09 -9.27 16 7 N -0.74 -8.34 5.55 -66.42 -0.37 -8.71 16 8 C 0.19 2.46 5.80 -5.20 -0.03 2.43 16 9 C -0.08 -1.15 5.25 -104.65 -0.55 -1.70 16 10 C -0.19 -2.77 9.70 -39.54 -0.38 -3.15 16 11 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 12 C -0.21 -4.26 9.17 -39.40 -0.36 -4.62 16 13 C 0.16 3.38 6.65 -39.11 -0.26 3.12 16 14 O -0.22 -5.45 8.59 0.04 0.00 -5.45 16 15 C -0.39 -10.67 9.95 30.89 0.31 -10.37 16 16 H 0.11 2.94 5.44 -52.49 -0.29 2.66 16 17 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 18 N -0.88 -24.77 13.96 55.48 0.77 -23.99 16 19 Si 0.91 21.27 28.62 -169.99 -4.86 16.40 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.26 -6.13 7.11 56.52 0.40 -5.72 16 23 C -0.17 -3.11 9.65 -39.39 -0.38 -3.49 16 24 C -0.12 -0.35 6.21 -25.10 -0.16 -0.50 16 25 C -0.16 -0.70 6.86 -26.74 -0.18 -0.88 16 26 C 0.52 4.51 8.43 -10.86 -0.09 4.42 16 27 O -0.53 -7.29 18.03 5.55 0.10 -7.19 16 28 N -0.72 -4.68 5.43 -46.61 -0.25 -4.94 16 29 H 0.06 0.24 6.79 -51.93 -0.35 -0.11 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.39 2.22 7.04 -40.82 -0.29 1.94 16 35 H 0.40 3.90 8.48 -40.82 -0.35 3.56 16 36 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 37 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 38 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 40 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 41 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.12 2.08 8.06 -52.48 -0.42 1.65 16 43 H 0.09 0.24 7.91 -51.93 -0.41 -0.17 16 44 H 0.10 0.10 7.89 -51.93 -0.41 -0.31 16 45 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.41 2.75 8.72 -40.82 -0.36 2.39 16 LS Contribution 394.34 15.07 5.94 5.94 Total: -1.00 -34.29 394.34 -8.58 -42.86 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.52 Total: 6.44 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -3.14 Total: -5.99 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: -0.18 Total: -43.75 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: 0.19 Total: -21.91 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.86 Total: 16.40 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.29 -8.58 -42.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364529479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.007 kcal (2) G-P(sol) polarization free energy of solvation -34.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds