Wall clock time and date at job start Wed Apr 1 2020 05:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 110.21768 * 2 1 4 4 N 1.46497 * 109.47063 * 301.92567 * 3 2 1 5 5 C 1.34774 * 119.99758 * 179.97438 * 4 3 2 6 6 O 1.21585 * 120.00075 * 0.02562 * 5 4 3 7 7 N 1.34781 * 119.99883 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99839 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.47074 * 180.02562 * 8 7 5 10 10 C 1.38322 * 119.96857 * 90.00078 * 9 8 7 11 11 C 1.38275 * 120.13916 * 179.97438 * 10 9 8 12 12 C 1.38116 * 120.07038 * 359.97438 * 11 10 9 13 13 C 1.38852 * 119.93228 * 0.02562 * 12 11 10 14 14 O 1.35751 * 120.07364 * 179.97438 * 13 12 11 15 15 C 1.34832 * 116.99677 * 354.48505 * 14 13 12 16 16 H 1.07999 * 120.00031 * 5.06419 * 15 14 13 17 17 C 1.38656 * 120.00253 * 185.05374 * 15 14 13 18 18 N 1.31556 * 120.00299 * 180.02562 * 17 15 14 19 19 Si 1.86810 * 119.99731 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47118 * 89.99581 * 19 17 15 21 21 H 1.48499 * 109.47020 * 209.99432 * 19 17 15 22 22 H 1.48497 * 109.46985 * 329.99761 * 19 17 15 23 23 C 1.38082 * 119.96472 * 269.97922 * 9 8 7 24 24 C 1.54485 * 110.24492 * 121.92982 * 2 1 3 25 25 C 1.54629 * 101.76581 * 93.66976 * 24 2 1 26 26 C 1.51283 * 104.19580 * 24.79891 * 25 24 2 27 27 O 1.21284 * 124.94438 * 163.74825 * 26 25 24 28 28 N 1.34421 * 110.11384 * 343.74649 * 26 25 24 29 29 H 1.09007 * 109.47050 * 59.29657 * 1 2 3 30 30 H 1.08995 * 109.47599 * 179.29986 * 1 2 3 31 31 H 1.08994 * 109.47236 * 299.30307 * 1 2 3 32 32 H 1.09006 * 109.46723 * 181.92840 * 3 2 1 33 33 H 1.08996 * 109.46979 * 61.93371 * 3 2 1 34 34 H 0.97000 * 120.00061 * 0.02562 * 4 3 2 35 35 H 0.97000 * 119.99935 * 0.02562 * 7 5 4 36 36 H 1.08999 * 109.47706 * 60.00467 * 8 7 5 37 37 H 1.09003 * 109.47682 * 299.99989 * 8 7 5 38 38 H 1.08000 * 119.92941 * 359.95649 * 10 9 8 39 39 H 1.08009 * 119.96415 * 179.72072 * 11 10 9 40 40 H 1.08000 * 120.03374 * 179.97438 * 12 11 10 41 41 H 0.97002 * 120.00007 * 180.02562 * 18 17 15 42 42 H 1.08003 * 120.03568 * 359.97438 * 23 9 8 43 43 H 1.09000 * 110.97193 * 211.79082 * 24 2 1 44 44 H 1.08997 * 110.96967 * 335.51589 * 24 2 1 45 45 H 1.08995 * 110.48728 * 143.47601 * 25 24 2 46 46 H 1.09002 * 110.48976 * 265.99351 * 25 24 2 47 47 H 0.97006 * 124.35129 * 179.57195 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4357 0.0000 4 7 1.5421 2.1464 -1.1723 5 6 1.8774 3.4350 -1.3810 6 8 2.6090 4.0075 -0.5966 7 7 1.4017 4.0889 -2.4592 8 6 1.7666 5.4894 -2.6864 9 6 1.1078 5.9817 -3.9492 10 6 -0.1480 6.5589 -3.8936 11 6 -0.7555 7.0123 -5.0501 12 6 -0.1094 6.8905 -6.2647 13 6 1.1513 6.3116 -6.3239 14 8 1.7887 6.1899 -7.5163 15 6 1.0982 6.5455 -8.6184 16 1 0.1160 6.9840 -8.5223 17 6 1.6494 6.3484 -9.8754 18 7 0.9759 6.6958 -10.9508 19 14 3.3483 5.5896 -10.0418 20 1 3.2236 4.1129 -10.1379 21 1 4.0057 6.1115 -11.2668 22 1 4.1659 5.9410 -8.8531 23 6 1.7587 5.8565 -5.1605 24 6 2.0645 -0.7666 1.2301 25 6 2.2646 -2.1874 0.6537 26 6 2.4538 -1.9625 -0.8303 27 8 2.9124 -2.7768 -1.6033 28 7 2.0396 -0.7290 -1.1674 29 1 -0.3633 0.5248 -0.8837 30 1 -0.3634 -1.0275 -0.0126 31 1 -0.3633 0.5029 0.8961 32 1 3.1481 1.4217 -0.0346 33 1 1.7306 1.9437 0.9068 34 1 0.9581 1.6897 -1.7978 35 1 0.8177 3.6323 -3.0848 36 1 2.8490 5.5715 -2.7851 37 1 1.4319 6.0936 -1.8431 38 1 -0.6552 6.6554 -2.9450 39 1 -1.7381 7.4584 -5.0040 40 1 -0.5846 7.2444 -7.1676 41 1 1.3613 6.5576 -11.8302 42 1 2.7395 5.4065 -5.2033 43 1 3.0112 -0.3468 1.5703 44 1 1.3305 -0.7716 2.0358 45 1 3.1508 -2.6528 1.0851 46 1 1.3835 -2.8019 0.8391 47 1 2.0735 -0.3669 -2.0667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364529479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:41 Heat of formation + Delta-G solvation = -94.206952 kcal Electronic energy + Delta-G solvation = -29246.469225 eV Core-core repulsion = 25007.704231 eV Total energy + Delta-G solvation = -4238.764995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.82077 -41.11313 -40.66286 -38.70518 -38.29810 -35.78846 -35.41182 -34.46385 -32.45014 -32.27920 -31.34351 -30.87551 -28.12583 -27.34390 -26.58203 -24.86428 -23.33150 -22.36316 -22.14579 -21.70707 -21.14603 -19.89033 -19.54822 -18.88819 -17.95755 -17.32568 -17.13689 -16.87350 -16.82523 -16.43856 -16.02483 -15.83735 -15.70398 -15.50257 -15.41693 -15.06854 -14.89497 -14.63400 -14.46652 -14.21677 -14.00820 -13.82058 -13.65492 -13.50000 -13.36016 -13.12674 -13.09948 -12.78035 -12.58753 -12.48251 -12.37528 -11.98476 -11.95569 -11.80013 -11.44026 -11.31086 -10.97885 -10.93153 -10.40170 -10.23253 -9.81770 -9.78173 -9.13021 -8.51684 -6.24156 0.33079 0.64440 1.30250 1.32884 1.49617 1.54585 1.75116 2.14836 2.25558 2.32582 2.74107 2.98872 3.09119 3.28982 3.39169 3.45896 3.74938 3.77041 3.92316 4.06306 4.12237 4.28027 4.40415 4.42716 4.49804 4.59891 4.64759 4.69703 4.74208 4.78749 4.86937 4.93518 4.95349 5.11380 5.12956 5.18678 5.33906 5.35964 5.41115 5.44839 5.63051 5.68820 5.73946 5.81748 5.88431 5.93265 5.99548 6.19071 6.83025 7.02920 7.19402 7.55524 7.57376 8.59640 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011757 B = 0.002092 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.059918 B =13380.121967 C =14907.203318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.150 3.850 3 C 0.139 3.861 4 N -0.735 5.735 5 C 0.703 3.297 6 O -0.632 6.632 7 N -0.731 5.731 8 C 0.194 3.806 9 C -0.060 4.060 10 C -0.156 4.156 11 C -0.074 4.074 12 C -0.228 4.228 13 C 0.118 3.882 14 O -0.246 6.246 15 C -0.397 4.397 16 H 0.084 0.916 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.967 3.033 20 H -0.267 1.267 21 H -0.269 1.269 22 H -0.264 1.264 23 C -0.170 4.170 24 C -0.113 4.113 25 C -0.148 4.148 26 C 0.508 3.492 27 O -0.594 6.594 28 N -0.719 5.719 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.407 0.593 35 H 0.408 0.592 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.109 0.891 41 H 0.284 0.716 42 H 0.121 0.879 43 H 0.093 0.907 44 H 0.127 0.873 45 H 0.109 0.891 46 H 0.124 0.876 47 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.801 -13.652 29.141 32.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.063 3.937 3 C 0.014 3.986 4 N -0.392 5.392 5 C 0.403 3.597 6 O -0.513 6.513 7 N -0.386 5.386 8 C 0.070 3.930 9 C -0.060 4.060 10 C -0.175 4.175 11 C -0.092 4.092 12 C -0.247 4.247 13 C 0.069 3.931 14 O -0.154 6.154 15 C -0.473 4.473 16 H 0.102 0.898 17 C -0.187 4.187 18 N -0.562 5.562 19 Si 0.790 3.210 20 H -0.192 1.192 21 H -0.193 1.193 22 H -0.189 1.189 23 C -0.190 4.190 24 C -0.151 4.151 25 C -0.188 4.188 26 C 0.297 3.703 27 O -0.475 6.475 28 N -0.373 5.373 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.243 0.757 35 H 0.243 0.757 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.169 0.831 39 H 0.162 0.838 40 H 0.127 0.873 41 H 0.094 0.906 42 H 0.139 0.861 43 H 0.112 0.888 44 H 0.145 0.855 45 H 0.128 0.872 46 H 0.142 0.858 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.682 -13.645 29.317 32.448 hybrid contribution 0.005 -0.081 -2.331 2.332 sum -2.677 -13.726 26.987 30.395 Atomic orbital electron populations 1.22209 0.91617 1.03541 1.04071 1.21466 0.95715 0.90096 0.86385 1.21609 0.98520 0.89922 0.88513 1.44986 1.54589 1.10221 1.29416 1.16021 0.80218 0.81899 0.81567 1.90911 1.42965 1.68565 1.48854 1.45069 1.53990 1.13009 1.26556 1.19866 0.98646 0.80845 0.93632 1.19474 0.94954 0.99109 0.92491 1.21044 0.95064 1.02561 0.98820 1.21152 0.99836 0.97223 0.90988 1.21398 0.96609 1.06913 0.99815 1.19597 0.92172 0.95179 0.86189 1.83525 1.41108 1.78052 1.12695 1.20698 1.02191 1.41582 0.82849 0.89819 1.25233 1.03074 0.97134 0.93307 1.69720 1.39961 1.47946 0.98593 0.85266 0.78599 0.78955 0.78206 1.19180 1.19348 1.18885 1.20287 1.01740 1.06852 0.90076 1.22757 1.04353 0.91963 0.96017 1.22395 1.06463 0.99968 0.89968 1.21667 0.74931 0.81173 0.92578 1.90752 1.47868 1.49424 1.59499 1.46562 1.63305 1.15567 1.11880 0.92115 0.91163 0.88838 0.92309 0.88993 0.75677 0.75652 0.91805 0.89605 0.83116 0.83793 0.87278 0.90602 0.86133 0.88826 0.85457 0.87248 0.85807 0.75537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.51 8.61 71.98 0.62 0.11 16 2 C 0.15 0.89 0.84 4.06 0.00 0.89 16 3 C 0.14 1.43 4.76 86.38 0.41 1.84 16 4 N -0.74 -9.45 5.14 -478.54 -2.46 -11.91 16 5 C 0.70 14.88 8.57 179.05 1.53 16.42 16 6 O -0.63 -18.65 16.34 -3.98 -0.07 -18.72 16 7 N -0.73 -14.35 5.55 -482.30 -2.68 -17.03 16 8 C 0.19 4.47 5.80 85.63 0.50 4.97 16 9 C -0.06 -1.63 5.25 -19.88 -0.10 -1.73 16 10 C -0.16 -3.95 9.70 22.30 0.22 -3.74 16 11 C -0.07 -2.23 10.04 22.25 0.22 -2.01 16 12 C -0.23 -9.27 9.17 22.39 0.21 -9.06 16 13 C 0.12 5.20 6.65 22.58 0.15 5.35 16 14 O -0.25 -13.00 8.59 -22.77 -0.20 -13.19 16 15 C -0.40 -22.83 9.95 67.92 0.68 -22.16 16 16 H 0.08 5.01 5.44 -2.91 -0.02 4.99 16 17 C 0.01 0.63 5.49 84.83 0.47 1.10 16 18 N -0.92 -54.37 13.96 21.61 0.30 -54.07 16 19 Si 0.97 45.21 28.62 68.60 1.96 47.17 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 22 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 23 C -0.17 -6.05 9.65 22.39 0.22 -5.83 16 24 C -0.11 -0.27 6.21 31.65 0.20 -0.07 16 25 C -0.15 -0.99 6.86 30.59 0.21 -0.78 16 26 C 0.51 8.50 8.43 87.90 0.74 9.24 16 27 O -0.59 -16.77 18.03 -3.04 -0.05 -16.83 16 28 N -0.72 -8.43 5.43 -419.97 -2.28 -10.71 16 29 H 0.06 0.25 6.79 -2.38 -0.02 0.24 16 30 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.41 3.48 7.04 -92.71 -0.65 2.83 16 35 H 0.41 6.66 8.48 -92.71 -0.79 5.87 16 36 H 0.06 1.63 8.08 -2.39 -0.02 1.61 16 37 H 0.09 1.83 8.08 -2.39 -0.02 1.81 16 38 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 39 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 40 H 0.11 4.95 5.64 -2.91 -0.02 4.93 16 41 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 42 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 43 H 0.09 0.21 7.91 -2.39 -0.02 0.19 16 44 H 0.13 -0.37 7.89 -2.39 -0.02 -0.39 16 45 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.41 5.14 8.72 -92.70 -0.81 4.34 16 Total: -1.00 -80.10 394.34 -0.42 -80.52 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -1.21 Total: 20.23 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 6.26 Total: -5.47 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -7.11 Total: -93.72 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -0.32 Total: -48.74 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.96 Total: 47.17 kcal Total: -80.10 -0.42 -80.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364529479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.689 kcal (2) G-P(sol) polarization free energy of solvation -80.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds