Wall clock time and date at job start Wed Apr 1 2020 05:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 110.21761 * 2 1 4 4 N 1.46498 * 109.46906 * 64.30399 * 3 2 1 5 5 C 1.34776 * 119.99900 * 180.02562 * 4 3 2 6 6 O 1.21591 * 119.99803 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00307 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00020 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.47021 * 179.97438 * 8 7 5 10 10 C 1.38317 * 119.96742 * 269.72706 * 9 8 7 11 11 C 1.38283 * 120.13925 * 179.76680 * 10 9 8 12 12 C 1.38125 * 120.06725 * 0.50386 * 11 10 9 13 13 C 1.38857 * 119.92713 * 359.75344 * 12 11 10 14 14 O 1.35752 * 120.06526 * 180.02562 * 13 12 11 15 15 C 1.34829 * 117.00255 * 354.44249 * 14 13 12 16 16 H 1.08005 * 119.99797 * 5.05116 * 15 14 13 17 17 C 1.38659 * 120.00241 * 185.05559 * 15 14 13 18 18 N 1.31560 * 119.99723 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00165 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46966 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47232 * 120.00081 * 19 17 15 22 22 H 1.48495 * 109.47464 * 240.00496 * 19 17 15 23 23 C 1.38078 * 119.96154 * 89.99944 * 9 8 7 24 24 C 1.54482 * 110.24665 * 238.06604 * 2 1 3 25 25 C 1.54625 * 101.76773 * 215.58458 * 24 2 1 26 26 C 1.51275 * 104.19434 * 24.80158 * 25 24 2 27 27 O 1.21284 * 124.93912 * 163.71566 * 26 25 24 28 28 N 1.34412 * 110.11622 * 343.74410 * 26 25 24 29 29 H 1.09003 * 109.47334 * 181.93499 * 1 2 3 30 30 H 1.08994 * 109.47647 * 61.92951 * 1 2 3 31 31 H 1.09005 * 109.47013 * 301.92820 * 1 2 3 32 32 H 1.09001 * 109.46929 * 184.29965 * 3 2 1 33 33 H 1.08999 * 109.46750 * 304.30086 * 3 2 1 34 34 H 0.96998 * 120.00475 * 359.97438 * 4 3 2 35 35 H 0.96998 * 119.99317 * 359.97438 * 7 5 4 36 36 H 1.09001 * 109.47054 * 300.00118 * 8 7 5 37 37 H 1.08995 * 109.47166 * 59.99999 * 8 7 5 38 38 H 1.07998 * 119.93028 * 359.97438 * 10 9 8 39 39 H 1.07996 * 119.96533 * 180.27362 * 11 10 9 40 40 H 1.07997 * 120.03553 * 179.71986 * 12 11 10 41 41 H 0.96998 * 119.99482 * 180.02562 * 18 17 15 42 42 H 1.07998 * 120.04114 * 0.02562 * 23 9 8 43 43 H 1.09001 * 110.97005 * 333.70949 * 24 2 1 44 44 H 1.09007 * 110.96288 * 97.43041 * 24 2 1 45 45 H 1.09006 * 110.48519 * 143.48052 * 25 24 2 46 46 H 1.09004 * 110.48449 * 266.12039 * 25 24 2 47 47 H 0.97011 * 124.34813 * 179.59683 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0587 1.4357 0.0000 4 7 1.6654 2.1009 1.2446 5 6 2.0227 3.3814 1.4663 6 8 2.6718 3.9843 0.6335 7 7 1.6605 3.9936 2.6111 8 6 2.0494 5.3853 2.8523 9 6 1.5235 5.8286 4.1932 10 6 0.2720 6.4101 4.2867 11 6 -0.2159 6.8138 5.5160 12 6 0.5498 6.6468 6.6533 13 6 1.8088 6.0681 6.5620 14 8 2.5636 5.9021 7.6780 15 6 2.0834 6.4235 8.8250 16 1 1.1015 6.8730 8.8443 17 6 2.8500 6.3827 9.9796 18 7 4.0463 5.8357 9.9558 19 14 2.1850 7.1057 11.5684 20 1 0.8267 7.6571 11.3308 21 1 2.1134 6.0435 12.6037 22 1 3.0857 8.1906 12.0338 23 6 2.2940 5.6589 5.3265 24 6 2.0645 -0.7666 -1.2300 25 6 3.3287 -1.4453 -0.6536 26 6 3.0522 -1.5452 0.8303 27 8 3.6574 -2.2574 1.6032 28 7 2.0379 -0.7302 1.1674 29 1 -0.3634 -1.0271 0.0347 30 1 -0.3634 0.4835 -0.9067 31 1 -0.3633 0.5435 0.8722 32 1 3.1459 1.4225 -0.0770 33 1 1.6408 1.9768 -0.8490 34 1 1.1473 1.6200 1.9088 35 1 1.1424 3.5126 3.2753 36 1 3.1364 5.4656 2.8432 37 1 1.6316 6.0199 2.0708 38 1 -0.3266 6.5462 3.3982 39 1 -1.1953 7.2636 5.5863 40 1 0.1701 6.9664 7.6125 41 1 4.5824 5.8069 10.7636 42 1 3.2730 5.2091 5.2523 43 1 1.3434 -1.5098 -1.5702 44 1 2.3230 -0.0795 -2.0358 45 1 3.4591 -2.4379 -1.0850 46 1 4.2094 -0.8298 -0.8371 47 1 1.6866 -0.6366 2.0668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364529482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:45 Heat of formation + Delta-G solvation = -69.953433 kcal Electronic energy + Delta-G solvation = -29266.807373 eV Core-core repulsion = 25029.094090 eV Total energy + Delta-G solvation = -4237.713283 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.21521 -39.91107 -39.09019 -37.64485 -36.83857 -34.62674 -34.38922 -32.35827 -31.85257 -31.40915 -30.57370 -29.16512 -27.23682 -25.77328 -25.11530 -24.39171 -21.75142 -21.47164 -21.07236 -20.81032 -20.57100 -18.77089 -17.80439 -17.31565 -17.13130 -16.72984 -15.97303 -15.83898 -15.37155 -15.10799 -14.71814 -14.65260 -14.56732 -14.39024 -14.22418 -13.91242 -13.76082 -13.60984 -13.51912 -13.36947 -13.05702 -12.83526 -12.61386 -12.41989 -12.26143 -12.09371 -11.69871 -11.57339 -11.48324 -11.40646 -10.97677 -10.84052 -10.72150 -10.48180 -10.28968 -10.22247 -9.60796 -9.43483 -9.41027 -8.91975 -8.84830 -8.28445 -7.35763 -6.51211 -4.10824 1.82439 2.23364 2.25400 2.65838 2.90730 3.08396 3.09783 3.15364 3.18199 3.78393 3.90210 3.90664 4.03967 4.21245 4.31848 4.49384 4.53368 4.78501 4.90650 5.01279 5.04635 5.15698 5.15881 5.19479 5.25037 5.33571 5.41472 5.43504 5.51716 5.56914 5.73572 5.82053 5.88819 6.04762 6.18311 6.22371 6.40157 6.49378 6.52665 6.61978 6.78710 6.79508 6.97697 7.16236 7.24651 7.33374 7.67932 7.87709 7.92588 7.93810 8.54085 8.94116 9.62616 10.66554 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013660 B = 0.001957 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.233479 B =14302.751329 C =15551.339288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 C 0.136 3.864 4 N -0.747 5.747 5 C 0.704 3.296 6 O -0.593 6.593 7 N -0.735 5.735 8 C 0.187 3.813 9 C -0.073 4.073 10 C -0.195 4.195 11 C -0.077 4.077 12 C -0.225 4.225 13 C 0.150 3.850 14 O -0.176 6.176 15 C -0.393 4.393 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.275 1.275 23 C -0.170 4.170 24 C -0.119 4.119 25 C -0.159 4.159 26 C 0.521 3.479 27 O -0.531 6.531 28 N -0.723 5.723 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.393 0.607 35 H 0.398 0.602 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.270 0.730 42 H 0.118 0.882 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.575 -10.884 -21.711 26.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.057 3.943 3 C 0.010 3.990 4 N -0.404 5.404 5 C 0.404 3.596 6 O -0.472 6.472 7 N -0.390 5.390 8 C 0.064 3.936 9 C -0.074 4.074 10 C -0.214 4.214 11 C -0.095 4.095 12 C -0.245 4.245 13 C 0.096 3.904 14 O -0.079 6.079 15 C -0.469 4.469 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.190 4.190 24 C -0.157 4.157 25 C -0.199 4.199 26 C 0.307 3.693 27 O -0.407 6.407 28 N -0.379 5.379 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.227 0.773 35 H 0.232 0.768 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.080 0.920 42 H 0.136 0.864 43 H 0.109 0.891 44 H 0.115 0.885 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -8.156 -10.854 -21.988 25.842 hybrid contribution -1.070 0.127 1.989 2.262 sum -9.226 -10.727 -19.999 24.498 Atomic orbital electron populations 1.22112 0.92482 1.03144 1.03599 1.21337 0.95283 0.91133 0.86592 1.21581 1.00535 0.90032 0.86811 1.44962 1.60925 1.12329 1.22156 1.15912 0.79993 0.81111 0.82575 1.90924 1.44700 1.65317 1.46231 1.45256 1.59587 1.14606 1.19538 1.20004 0.99770 0.80081 0.93770 1.19267 0.94828 1.00319 0.92981 1.20474 0.96519 1.07300 0.97116 1.20748 0.98389 0.98007 0.92349 1.21245 0.95950 1.07936 0.99367 1.19331 0.90318 0.92765 0.87998 1.83985 1.43562 1.66628 1.13757 1.21374 1.02477 1.38633 0.84455 0.88969 1.25312 0.95299 0.96947 0.98974 1.70048 1.09334 1.40834 1.29243 0.85636 0.78862 0.78670 0.80188 1.19086 1.20110 1.20079 1.20101 1.01043 1.08002 0.89840 1.22652 0.96963 0.99830 0.96279 1.22400 0.99970 1.04189 0.93312 1.20879 0.78891 0.78457 0.91052 1.90793 1.51638 1.40752 1.57552 1.46370 1.36565 1.43784 1.11155 0.91332 0.90345 0.91733 0.91086 0.90155 0.77305 0.76781 0.91011 0.91069 0.87506 0.87300 0.85466 0.91964 0.86398 0.89112 0.88479 0.87792 0.87474 0.75166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.52 8.69 37.15 0.32 -0.19 16 2 C 0.14 0.67 0.83 -130.90 -0.11 0.56 16 3 C 0.14 0.96 4.71 -4.04 -0.02 0.94 16 4 N -0.75 -6.46 5.16 -65.23 -0.34 -6.80 16 5 C 0.70 9.10 8.57 -86.92 -0.74 8.35 16 6 O -0.59 -9.96 16.34 5.29 0.09 -9.87 16 7 N -0.74 -9.18 5.55 -66.41 -0.37 -9.54 16 8 C 0.19 2.69 5.80 -5.19 -0.03 2.66 16 9 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 10 C -0.19 -3.08 9.70 -39.54 -0.38 -3.47 16 11 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 12 C -0.23 -4.64 9.17 -39.39 -0.36 -5.00 16 13 C 0.15 3.46 6.65 -39.11 -0.26 3.20 16 14 O -0.18 -4.89 9.76 0.05 0.00 -4.89 16 15 C -0.39 -10.73 9.49 30.89 0.29 -10.43 16 16 H 0.09 2.32 5.20 -52.48 -0.27 2.04 16 17 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -24.94 13.67 55.48 0.76 -24.18 16 19 Si 0.94 20.16 29.55 -169.99 -5.02 15.14 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 C -0.17 -3.40 9.65 -39.39 -0.38 -3.78 16 24 C -0.12 -0.38 6.21 -25.10 -0.16 -0.53 16 25 C -0.16 -0.85 6.86 -26.75 -0.18 -1.04 16 26 C 0.52 4.89 8.43 -10.87 -0.09 4.80 16 27 O -0.53 -7.67 18.03 5.55 0.10 -7.57 16 28 N -0.72 -4.87 5.18 -46.62 -0.24 -5.11 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.23 7.15 -51.93 -0.37 -0.14 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.39 2.55 7.26 -40.82 -0.30 2.25 16 35 H 0.40 4.34 8.48 -40.82 -0.35 4.00 16 36 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 37 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 38 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 41 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 43 H 0.09 0.19 7.91 -51.93 -0.41 -0.23 16 44 H 0.10 0.18 7.89 -51.92 -0.41 -0.23 16 45 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.41 2.61 8.75 -40.82 -0.36 2.25 16 LS Contribution 395.87 15.07 5.97 5.97 Total: -1.00 -35.84 395.87 -8.74 -44.59 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -6.54 Total: 8.69 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -3.14 Total: -6.42 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.19 Total: -45.63 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: 0.19 Total: -22.33 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.84 -8.74 -44.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364529482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.367 kcal (2) G-P(sol) polarization free energy of solvation -35.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds