Wall clock time and date at job start Wed Apr 1 2020 04:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34710 * 117.00014 * 2 1 4 4 O 1.21472 * 119.99932 * 359.97438 * 3 2 1 5 5 C 1.47734 * 120.00044 * 180.02562 * 3 2 1 6 6 C 1.39977 * 120.53115 * 6.81445 * 5 3 2 7 7 C 1.38973 * 118.22319 * 180.23720 * 6 5 3 8 8 N 1.40007 * 120.41425 * 179.81307 * 7 6 5 9 9 C 1.34777 * 120.00243 * 326.06547 * 8 7 6 10 10 O 1.21588 * 119.99987 * 4.57359 * 9 8 7 11 11 N 1.34777 * 120.00299 * 184.57657 * 9 8 7 12 12 C 1.46925 * 120.62557 * 354.94332 * 11 9 8 13 13 C 1.53200 * 108.77288 * 126.41473 * 12 11 9 14 14 C 1.53041 * 109.31531 * 54.63313 * 13 12 11 15 15 C 1.53049 * 109.53446 * 298.63721 * 14 13 12 16 16 H 1.08998 * 109.51883 * 301.39497 * 15 14 13 17 17 C 1.50695 * 109.49353 * 181.31793 * 15 14 13 18 18 H 1.08000 * 120.00321 * 0.15722 * 17 15 14 19 19 C 1.37878 * 119.99827 * 180.43733 * 17 15 14 20 20 N 1.31510 * 120.00236 * 179.72691 * 19 17 15 21 21 Si 1.86805 * 119.99960 * 359.71755 * 19 17 15 22 22 H 1.48500 * 109.46938 * 90.00572 * 21 19 17 23 23 H 1.48501 * 109.47102 * 210.00307 * 21 19 17 24 24 H 1.48500 * 109.47033 * 330.00631 * 21 19 17 25 25 C 1.46920 * 120.63139 * 174.96073 * 11 9 8 26 26 C 1.38979 * 119.16512 * 359.53804 * 7 6 5 27 27 N 1.31869 * 120.99420 * 0.22580 * 26 7 6 28 28 C 1.31675 * 121.96468 * 0.02688 * 27 26 7 29 29 C 1.50693 * 119.64705 * 179.97438 * 28 27 26 30 30 H 1.09005 * 109.47343 * 60.00487 * 1 2 3 31 31 H 1.09001 * 109.47378 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47602 * 300.00580 * 1 2 3 33 33 H 1.08000 * 120.89248 * 0.02884 * 6 5 3 34 34 H 0.96996 * 119.99875 * 146.06846 * 8 7 6 35 35 H 1.09000 * 109.58316 * 246.19419 * 12 11 9 36 36 H 1.08999 * 109.59161 * 6.62847 * 12 11 9 37 37 H 1.09000 * 109.49590 * 174.58437 * 13 12 11 38 38 H 1.08994 * 109.49488 * 294.67946 * 13 12 11 39 39 H 1.08995 * 109.45948 * 178.61442 * 14 13 12 40 40 H 1.09006 * 109.46225 * 58.65043 * 14 13 12 41 41 H 0.97000 * 120.00424 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.58104 * 113.79901 * 25 11 9 43 43 H 1.08996 * 109.70703 * 353.45218 * 25 11 9 44 44 H 1.08001 * 119.50754 * 180.25051 * 26 7 6 45 45 H 1.09000 * 109.47398 * 97.08198 * 29 28 27 46 46 H 1.09003 * 109.47549 * 217.08925 * 29 28 27 47 47 H 1.09001 * 109.47024 * 337.08343 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3116 0.1193 -0.1442 7 6 5.6954 0.2469 -0.1330 8 7 6.5123 -0.8819 -0.2692 9 6 6.1210 -2.0634 0.2480 10 8 5.0231 -2.1694 0.7594 11 7 6.9468 -3.1274 0.1983 12 6 8.2300 -3.0465 -0.5127 13 6 9.3495 -3.4788 0.4396 14 6 9.0286 -4.8657 1.0015 15 6 7.7186 -4.8076 1.7907 16 1 7.8112 -4.0801 2.5971 17 6 7.4202 -6.1661 2.3706 18 1 8.0982 -6.9885 2.1964 19 6 6.2785 -6.3606 3.1188 20 7 6.0153 -7.5475 3.6205 21 14 5.1057 -4.9382 3.4203 22 1 4.0901 -4.8962 2.3378 23 1 4.4277 -5.1244 4.7283 24 1 5.8672 -3.6633 3.4344 25 6 6.5807 -4.3903 0.8538 26 6 6.2580 1.5097 0.0092 27 7 5.4993 2.5806 0.1373 28 6 4.1846 2.5075 0.1374 29 6 3.3681 3.7651 0.2879 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 3.8449 -0.8481 -0.2572 34 1 7.3600 -0.8137 -0.7357 35 1 8.2105 -3.7088 -1.3782 36 1 8.4032 -2.0209 -0.8385 37 1 10.2943 -3.5157 -0.1026 38 1 9.4270 -2.7636 1.2583 39 1 9.8356 -5.1862 1.6603 40 1 8.9267 -5.5755 0.1805 41 1 5.2120 -7.6844 4.1466 42 1 6.4267 -5.1621 0.0996 43 1 5.6651 -4.2539 1.4291 44 1 7.3328 1.6157 0.0145 45 1 3.0582 4.1171 -0.6960 46 1 2.4862 3.5556 0.8933 47 1 3.9694 4.5325 0.7755 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365543554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:25 Heat of formation + Delta-G solvation = -57.690384 kcal Electronic energy + Delta-G solvation = -31136.265020 eV Core-core repulsion = 26899.083502 eV Total energy + Delta-G solvation = -4237.181517 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.39279 -40.51693 -39.58655 -37.50614 -36.70799 -35.28924 -33.62448 -32.86507 -32.23592 -31.51055 -30.55382 -28.29444 -27.27474 -25.35903 -24.96063 -24.78923 -22.62521 -22.19881 -21.53783 -20.27409 -19.37295 -18.73252 -17.74868 -17.47698 -16.81120 -16.66557 -16.48677 -16.34077 -16.08475 -15.37576 -15.02510 -14.66534 -14.27770 -14.10986 -13.96657 -13.85393 -13.44652 -13.35950 -13.17913 -13.03545 -12.85476 -12.74266 -12.55589 -12.30920 -12.29254 -12.16224 -11.46311 -11.16375 -11.00572 -10.91931 -10.74709 -10.65711 -10.50580 -10.22432 -10.13869 -10.00774 -9.83366 -9.60576 -9.33292 -9.18447 -8.68760 -8.53016 -8.11488 -6.15843 -4.17992 0.26246 0.96790 2.26056 2.44370 2.53095 3.14945 3.34081 3.41833 3.52297 3.54536 3.75763 4.06198 4.35334 4.37074 4.52066 4.62896 4.81921 4.90804 4.93521 4.99348 5.04937 5.15555 5.17047 5.29913 5.34807 5.53092 5.57424 5.58545 5.63031 5.76661 5.85656 5.95907 5.96975 5.98949 6.02305 6.26020 6.28061 6.39894 6.46231 6.54429 6.59897 6.68859 6.92845 7.09537 7.35411 7.49820 7.59425 7.65205 7.89526 8.40945 8.56491 8.87227 9.45290 10.96015 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012216 B = 0.003403 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.444172 B = 8225.703621 C = 9888.203853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.347 6.347 3 C 0.517 3.483 4 O -0.500 6.500 5 C -0.165 4.165 6 C -0.021 4.021 7 C 0.106 3.894 8 N -0.685 5.685 9 C 0.699 3.301 10 O -0.573 6.573 11 N -0.615 5.615 12 C 0.112 3.888 13 C -0.137 4.137 14 C -0.100 4.100 15 C 0.004 3.996 16 H 0.031 0.969 17 C -0.517 4.517 18 H 0.078 0.922 19 C 0.074 3.926 20 N -0.894 5.894 21 Si 0.879 3.121 22 H -0.271 1.271 23 H -0.295 1.295 24 H -0.265 1.265 25 C 0.117 3.883 26 C 0.110 3.890 27 N -0.469 5.469 28 C 0.169 3.831 29 C -0.106 4.106 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.170 0.830 34 H 0.409 0.591 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.266 0.734 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.165 0.835 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.191 18.271 -11.817 21.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.263 6.263 3 C 0.362 3.638 4 O -0.390 6.390 5 C -0.169 4.169 6 C -0.049 4.049 7 C 0.008 3.992 8 N -0.336 5.336 9 C 0.401 3.599 10 O -0.450 6.450 11 N -0.350 5.350 12 C -0.011 4.011 13 C -0.175 4.175 14 C -0.138 4.138 15 C -0.015 4.015 16 H 0.049 0.951 17 C -0.556 4.556 18 H 0.096 0.904 19 C -0.129 4.129 20 N -0.531 5.531 21 Si 0.709 3.291 22 H -0.197 1.197 23 H -0.223 1.223 24 H -0.190 1.190 25 C -0.003 4.003 26 C -0.050 4.050 27 N -0.178 5.178 28 C 0.030 3.970 29 C -0.163 4.163 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.187 0.813 34 H 0.248 0.752 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.183 0.817 45 H 0.101 0.899 46 H 0.115 0.885 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.908 19.042 -11.226 22.186 hybrid contribution -0.729 -0.265 -0.086 0.780 sum -2.636 18.777 -11.311 22.079 Atomic orbital electron populations 1.23322 0.75673 1.04106 1.02525 1.86631 1.23744 1.32132 1.83817 1.20859 0.88555 0.81635 0.72731 1.90784 1.66771 1.35446 1.46020 1.19861 0.90569 0.94985 1.11526 1.22236 0.92197 0.99708 0.90762 1.18478 0.90728 0.87650 1.02366 1.42781 1.23739 1.07067 1.60060 1.15962 0.84612 0.80063 0.79248 1.90926 1.20397 1.83003 1.50625 1.47752 1.18882 1.12484 1.55926 1.21660 0.83809 1.00265 0.95360 1.22002 0.96780 0.99805 0.98936 1.21439 0.98989 0.93859 0.99528 1.19511 0.90688 0.97998 0.93352 0.95138 1.20937 1.08399 0.94378 1.31849 0.90368 1.25045 0.97622 0.95404 0.94840 1.69881 1.26643 1.21818 1.34784 0.86998 0.81814 0.83048 0.77255 1.19730 1.22269 1.19022 1.22637 1.01012 0.80575 0.96085 1.22850 1.00595 0.86480 0.95064 1.67667 1.05149 1.30961 1.13985 1.21405 0.89829 0.93940 0.91818 1.20999 0.99005 0.92533 1.03788 0.91748 0.87768 0.91684 0.81276 0.75236 0.90945 0.91720 0.91422 0.91904 0.92053 0.92364 0.92429 0.91312 0.90145 0.81746 0.89902 0.88528 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.42 16 2 O -0.35 -4.67 9.91 -40.52 -0.40 -5.07 16 3 C 0.52 7.09 7.82 34.61 0.27 7.36 16 4 O -0.50 -6.93 13.17 -19.24 -0.25 -7.18 16 5 C -0.17 -2.27 5.89 -104.86 -0.62 -2.89 16 6 C -0.02 -0.31 8.37 -38.66 -0.32 -0.63 16 7 C 0.11 1.37 6.34 -83.58 -0.53 0.84 16 8 N -0.69 -8.59 5.27 -14.15 -0.07 -8.67 16 9 C 0.70 12.12 8.16 -86.92 -0.71 11.41 16 10 O -0.57 -12.27 13.19 5.29 0.07 -12.20 16 11 N -0.61 -10.43 2.97 -178.50 -0.53 -10.96 16 12 C 0.11 1.35 6.43 -3.71 -0.02 1.32 16 13 C -0.14 -1.77 6.08 -26.61 -0.16 -1.93 16 14 C -0.10 -1.74 5.11 -26.69 -0.14 -1.88 16 15 C 0.00 0.09 1.84 -91.65 -0.17 -0.08 16 16 H 0.03 0.73 7.21 -51.93 -0.37 0.35 16 17 C -0.52 -13.89 9.15 -34.44 -0.32 -14.21 16 18 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 19 C 0.07 2.10 5.45 -17.82 -0.10 2.01 16 20 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 21 Si 0.88 22.84 24.32 -169.99 -4.13 18.70 16 22 H -0.27 -7.09 6.91 56.52 0.39 -6.70 16 23 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 24 H -0.27 -6.91 6.54 56.52 0.37 -6.54 16 25 C 0.12 2.49 5.09 -3.72 -0.02 2.47 16 26 C 0.11 1.22 11.11 -17.26 -0.19 1.02 16 27 N -0.47 -5.79 10.25 -8.99 -0.09 -5.89 16 28 C 0.17 2.15 6.82 -82.16 -0.56 1.59 16 29 C -0.11 -1.13 8.84 36.00 0.32 -0.82 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.17 2.79 5.89 -52.49 -0.31 2.48 16 34 H 0.41 3.56 6.27 -40.82 -0.26 3.31 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.53 5.56 -51.93 -0.29 0.25 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.08 1.95 2.33 -51.93 -0.12 1.83 16 44 H 0.17 1.25 8.06 -52.49 -0.42 0.82 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.10 1.10 5.90 -51.93 -0.31 0.80 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -34.26 373.74 -7.53 -41.80 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.33 Total: 2.93 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -2.20 Total: 7.03 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.08 Total: -51.63 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.59 Total: -24.46 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.13 Total: 18.70 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.26 -7.53 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365543554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.895 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds