Wall clock time and date at job start Wed Apr 1 2020 04:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34710 * 117.00014 * 2 1 4 4 O 1.21472 * 119.99932 * 359.97438 * 3 2 1 5 5 C 1.47734 * 120.00044 * 180.02562 * 3 2 1 6 6 C 1.39977 * 120.53115 * 6.81445 * 5 3 2 7 7 C 1.38973 * 118.22319 * 180.23720 * 6 5 3 8 8 N 1.40007 * 120.41425 * 179.81307 * 7 6 5 9 9 C 1.34777 * 120.00243 * 326.06547 * 8 7 6 10 10 O 1.21588 * 119.99987 * 4.57359 * 9 8 7 11 11 N 1.34777 * 120.00299 * 184.57657 * 9 8 7 12 12 C 1.46925 * 120.62557 * 354.94332 * 11 9 8 13 13 C 1.53200 * 108.77288 * 126.41473 * 12 11 9 14 14 C 1.53041 * 109.31531 * 54.63313 * 13 12 11 15 15 C 1.53049 * 109.53446 * 298.63721 * 14 13 12 16 16 H 1.08998 * 109.51883 * 301.39497 * 15 14 13 17 17 C 1.50695 * 109.49353 * 181.31793 * 15 14 13 18 18 H 1.08000 * 120.00321 * 0.15722 * 17 15 14 19 19 C 1.37878 * 119.99827 * 180.43733 * 17 15 14 20 20 N 1.31510 * 120.00236 * 179.72691 * 19 17 15 21 21 Si 1.86805 * 119.99960 * 359.71755 * 19 17 15 22 22 H 1.48500 * 109.46938 * 90.00572 * 21 19 17 23 23 H 1.48501 * 109.47102 * 210.00307 * 21 19 17 24 24 H 1.48500 * 109.47033 * 330.00631 * 21 19 17 25 25 C 1.46920 * 120.63139 * 174.96073 * 11 9 8 26 26 C 1.38979 * 119.16512 * 359.53804 * 7 6 5 27 27 N 1.31869 * 120.99420 * 0.22580 * 26 7 6 28 28 C 1.31675 * 121.96468 * 0.02688 * 27 26 7 29 29 C 1.50693 * 119.64705 * 179.97438 * 28 27 26 30 30 H 1.09005 * 109.47343 * 60.00487 * 1 2 3 31 31 H 1.09001 * 109.47378 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47602 * 300.00580 * 1 2 3 33 33 H 1.08000 * 120.89248 * 0.02884 * 6 5 3 34 34 H 0.96996 * 119.99875 * 146.06846 * 8 7 6 35 35 H 1.09000 * 109.58316 * 246.19419 * 12 11 9 36 36 H 1.08999 * 109.59161 * 6.62847 * 12 11 9 37 37 H 1.09000 * 109.49590 * 174.58437 * 13 12 11 38 38 H 1.08994 * 109.49488 * 294.67946 * 13 12 11 39 39 H 1.08995 * 109.45948 * 178.61442 * 14 13 12 40 40 H 1.09006 * 109.46225 * 58.65043 * 14 13 12 41 41 H 0.97000 * 120.00424 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.58104 * 113.79901 * 25 11 9 43 43 H 1.08996 * 109.70703 * 353.45218 * 25 11 9 44 44 H 1.08001 * 119.50754 * 180.25051 * 26 7 6 45 45 H 1.09000 * 109.47398 * 97.08198 * 29 28 27 46 46 H 1.09003 * 109.47549 * 217.08925 * 29 28 27 47 47 H 1.09001 * 109.47024 * 337.08343 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3116 0.1193 -0.1442 7 6 5.6954 0.2469 -0.1330 8 7 6.5123 -0.8819 -0.2692 9 6 6.1210 -2.0634 0.2480 10 8 5.0231 -2.1694 0.7594 11 7 6.9468 -3.1274 0.1983 12 6 8.2300 -3.0465 -0.5127 13 6 9.3495 -3.4788 0.4396 14 6 9.0286 -4.8657 1.0015 15 6 7.7186 -4.8076 1.7907 16 1 7.8112 -4.0801 2.5971 17 6 7.4202 -6.1661 2.3706 18 1 8.0982 -6.9885 2.1964 19 6 6.2785 -6.3606 3.1188 20 7 6.0153 -7.5475 3.6205 21 14 5.1057 -4.9382 3.4203 22 1 4.0901 -4.8962 2.3378 23 1 4.4277 -5.1244 4.7283 24 1 5.8672 -3.6633 3.4344 25 6 6.5807 -4.3903 0.8538 26 6 6.2580 1.5097 0.0092 27 7 5.4993 2.5806 0.1373 28 6 4.1846 2.5075 0.1374 29 6 3.3681 3.7651 0.2879 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 3.8449 -0.8481 -0.2572 34 1 7.3600 -0.8137 -0.7357 35 1 8.2105 -3.7088 -1.3782 36 1 8.4032 -2.0209 -0.8385 37 1 10.2943 -3.5157 -0.1026 38 1 9.4270 -2.7636 1.2583 39 1 9.8356 -5.1862 1.6603 40 1 8.9267 -5.5755 0.1805 41 1 5.2120 -7.6844 4.1466 42 1 6.4267 -5.1621 0.0996 43 1 5.6651 -4.2539 1.4291 44 1 7.3328 1.6157 0.0145 45 1 3.0582 4.1171 -0.6960 46 1 2.4862 3.5556 0.8933 47 1 3.9694 4.5325 0.7755 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365543554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:24 Heat of formation + Delta-G solvation = -81.222139 kcal Electronic energy + Delta-G solvation = -31137.285433 eV Core-core repulsion = 26899.083502 eV Total energy + Delta-G solvation = -4238.201931 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.44642 -41.66292 -40.65414 -38.85048 -37.73002 -36.48314 -35.35777 -33.94779 -33.71681 -32.60115 -32.09621 -29.20095 -28.22925 -27.02787 -26.21122 -25.91906 -23.65545 -23.60171 -22.61439 -21.61737 -20.66520 -19.92393 -19.05477 -18.72492 -18.48589 -17.63423 -17.48919 -17.36060 -17.25944 -16.77324 -16.43363 -15.81343 -15.65538 -15.46573 -15.35522 -14.92483 -14.78932 -14.62861 -14.44594 -14.26466 -14.09862 -13.79310 -13.69415 -13.48418 -13.22333 -13.13781 -13.02026 -12.91367 -12.34809 -12.14396 -12.02341 -11.89814 -11.88806 -11.67150 -11.59452 -11.44921 -11.10773 -11.03235 -11.00698 -10.81046 -10.63975 -9.80653 -9.28026 -8.39699 -6.41258 -0.70278 -0.06202 1.22387 1.24112 1.28341 1.34247 1.39197 1.54717 1.90022 2.19519 2.55794 2.64839 2.98184 3.19173 3.40024 3.56441 3.65586 3.87441 3.97233 4.03723 4.14322 4.15279 4.20923 4.25890 4.43653 4.50515 4.59735 4.61364 4.62112 4.69151 4.72273 4.73089 4.84939 4.86065 4.95869 5.00374 5.05044 5.11073 5.22779 5.32441 5.37635 5.53908 5.54557 5.60584 5.68718 5.80605 6.26477 6.49916 6.64378 6.67742 6.76066 7.24455 7.29194 8.76394 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012216 B = 0.003403 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.444172 B = 8225.703621 C = 9888.203853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.514 3.486 4 O -0.507 6.507 5 C -0.180 4.180 6 C -0.036 4.036 7 C 0.094 3.906 8 N -0.660 5.660 9 C 0.695 3.305 10 O -0.621 6.621 11 N -0.617 5.617 12 C 0.105 3.895 13 C -0.127 4.127 14 C -0.099 4.099 15 C 0.004 3.996 16 H 0.014 0.986 17 C -0.510 4.510 18 H 0.052 0.948 19 C 0.030 3.970 20 N -0.937 5.937 21 Si 0.937 3.063 22 H -0.280 1.280 23 H -0.298 1.298 24 H -0.268 1.268 25 C 0.126 3.874 26 C 0.133 3.867 27 N -0.474 5.474 28 C 0.169 3.831 29 C -0.102 4.102 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.068 0.932 33 H 0.144 0.856 34 H 0.430 0.570 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.267 0.733 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.209 0.791 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.958 21.229 -13.693 25.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.283 6.283 3 C 0.360 3.640 4 O -0.398 6.398 5 C -0.184 4.184 6 C -0.064 4.064 7 C -0.004 4.004 8 N -0.313 5.313 9 C 0.397 3.603 10 O -0.501 6.501 11 N -0.352 5.352 12 C -0.016 4.016 13 C -0.165 4.165 14 C -0.137 4.137 15 C -0.016 4.016 16 H 0.032 0.968 17 C -0.549 4.549 18 H 0.070 0.930 19 C -0.169 4.169 20 N -0.578 5.578 21 Si 0.767 3.233 22 H -0.207 1.207 23 H -0.225 1.225 24 H -0.194 1.194 25 C 0.004 3.996 26 C -0.028 4.028 27 N -0.183 5.183 28 C 0.031 3.969 29 C -0.159 4.159 30 H 0.093 0.907 31 H 0.140 0.860 32 H 0.087 0.913 33 H 0.162 0.838 34 H 0.273 0.727 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.226 0.774 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.287 22.049 -13.145 25.671 hybrid contribution -1.357 -1.188 0.454 1.860 sum -1.070 20.861 -12.691 24.441 Atomic orbital electron populations 1.23606 0.73837 1.05620 1.03264 1.86621 1.25758 1.32256 1.83698 1.20950 0.88791 0.81641 0.72622 1.90766 1.66987 1.35495 1.46550 1.19939 0.90614 0.95291 1.12576 1.22097 0.93442 0.98929 0.91950 1.18592 0.90086 0.88391 1.03342 1.42362 1.24281 1.05342 1.59306 1.16121 0.83989 0.81115 0.79091 1.90910 1.22606 1.83924 1.52641 1.47599 1.20734 1.10914 1.55959 1.22088 0.80756 1.03745 0.95038 1.21952 0.98982 0.96194 0.99380 1.21386 0.95842 0.97461 0.99008 1.19443 0.93908 0.94486 0.93754 0.96759 1.21338 1.06885 0.96029 1.30603 0.92974 1.25608 0.99201 0.96681 0.95417 1.69979 1.27614 1.23424 1.36740 0.86091 0.80075 0.80783 0.76362 1.20688 1.22539 1.19363 1.22050 0.98924 0.82865 0.95804 1.23457 1.02325 0.84925 0.92057 1.67796 1.04876 1.31300 1.14355 1.21714 0.90344 0.94095 0.90793 1.20998 0.98592 0.92053 1.04247 0.90651 0.85971 0.91306 0.83846 0.72697 0.89170 0.86989 0.87133 0.92093 0.92636 0.92083 0.92398 0.91520 0.93442 0.77421 0.88990 0.89485 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.76 16 2 O -0.37 -10.15 9.91 -56.20 -0.56 -10.71 16 3 C 0.51 14.26 7.82 70.33 0.55 14.81 16 4 O -0.51 -13.98 13.17 19.93 0.26 -13.72 16 5 C -0.18 -4.88 5.89 -20.02 -0.12 -5.00 16 6 C -0.04 -1.04 8.37 22.87 0.19 -0.85 16 7 C 0.09 2.20 6.34 38.19 0.24 2.44 16 8 N -0.66 -14.39 5.27 -316.96 -1.67 -16.06 16 9 C 0.69 22.96 8.16 179.05 1.46 24.42 16 10 O -0.62 -26.83 13.19 -3.99 -0.05 -26.88 16 11 N -0.62 -19.57 2.97 -836.92 -2.49 -22.06 16 12 C 0.10 2.02 6.43 86.37 0.56 2.57 16 13 C -0.13 -2.70 6.08 30.67 0.19 -2.51 16 14 C -0.10 -3.24 5.11 30.62 0.16 -3.09 16 15 C 0.00 0.17 1.84 -11.46 -0.02 0.15 16 16 H 0.01 0.68 7.21 -2.39 -0.02 0.66 16 17 C -0.51 -28.05 9.15 25.60 0.23 -27.82 16 18 H 0.05 3.08 7.99 -2.91 -0.02 3.06 16 19 C 0.03 1.74 5.45 84.66 0.46 2.20 16 20 N -0.94 -58.33 13.96 21.45 0.30 -58.03 16 21 Si 0.94 49.46 24.32 68.60 1.67 51.13 16 22 H -0.28 -15.01 6.91 99.48 0.69 -14.33 16 23 H -0.30 -15.57 7.11 99.48 0.71 -14.86 16 24 H -0.27 -14.10 6.54 99.48 0.65 -13.45 16 25 C 0.13 5.33 5.09 86.36 0.44 5.76 16 26 C 0.13 2.40 11.11 84.87 0.94 3.35 16 27 N -0.47 -10.26 10.25 -182.35 -1.87 -12.13 16 28 C 0.17 4.01 6.82 42.91 0.29 4.31 16 29 C -0.10 -2.01 8.84 71.23 0.63 -1.38 16 30 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.14 4.93 5.89 -2.91 -0.02 4.91 16 34 H 0.43 5.22 6.27 -92.71 -0.58 4.64 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.11 1.11 5.56 -2.39 -0.01 1.10 16 37 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 42 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 43 H 0.05 2.34 2.33 -2.39 -0.01 2.33 16 44 H 0.21 1.87 8.06 -2.91 -0.02 1.85 16 45 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.09 1.91 5.90 -2.39 -0.01 1.90 16 47 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -79.80 373.74 3.36 -76.44 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.36 Total: 10.91 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 7.40 Total: 21.11 kcal Atomic # 7 Polarization: -102.56 SS G_CDS: -5.73 Total: -108.29 kcal Atomic # 8 Polarization: -50.96 SS G_CDS: -0.35 Total: -51.31 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 1.67 Total: 51.13 kcal Total: -79.80 3.36 -76.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365543554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.781 kcal (2) G-P(sol) polarization free energy of solvation -79.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds