Wall clock time and date at job start Wed Apr 1 2020 05:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33644 * 125.80466 * 2 1 4 4 C 1.34214 * 110.91160 * 180.25168 * 3 2 1 5 5 C 1.34178 * 109.12216 * 359.76513 * 4 3 2 6 6 C 1.36417 * 125.79688 * 179.84307 * 2 1 3 7 7 C 1.47378 * 127.19319 * 0.03433 * 6 2 1 8 8 O 1.21612 * 119.99981 * 359.70873 * 7 6 2 9 9 N 1.34783 * 120.00001 * 179.43233 * 7 6 2 10 10 C 1.46496 * 119.99751 * 180.27356 * 9 7 6 11 11 C 1.50706 * 109.46745 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00204 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99723 * 180.02562 * 11 10 9 14 14 C 1.47157 * 120.71031 * 359.71697 * 13 11 10 15 15 C 1.54327 * 107.80291 * 132.68686 * 14 13 11 16 16 H 1.09002 * 112.53366 * 182.37647 * 15 14 13 17 17 C 1.54543 * 107.98306 * 306.74038 * 15 14 13 18 18 C 1.55852 * 105.00084 * 89.00456 * 17 15 14 19 19 C 1.54549 * 104.09498 * 0.02562 * 18 17 15 20 20 H 1.09002 * 112.18143 * 146.81658 * 19 18 17 21 21 C 1.47161 * 120.70682 * 180.02562 * 13 11 10 22 22 N 1.48303 * 107.10092 * 58.61830 * 15 14 13 23 23 C 1.36935 * 128.07793 * 106.57618 * 22 15 14 24 24 H 1.08003 * 120.00144 * 164.87030 * 23 22 15 25 25 C 1.38819 * 120.00163 * 344.87433 * 23 22 15 26 26 N 1.31621 * 119.99460 * 350.26140 * 25 23 22 27 27 Si 1.86795 * 120.00249 * 170.25792 * 25 23 22 28 28 H 1.48500 * 109.46984 * 0.02562 * 27 25 23 29 29 H 1.48504 * 109.46905 * 120.00035 * 27 25 23 30 30 H 1.48497 * 109.47169 * 239.99894 * 27 25 23 31 31 H 1.09007 * 109.46748 * 270.16411 * 1 2 3 32 32 H 1.09006 * 109.46978 * 30.15560 * 1 2 3 33 33 H 1.08998 * 109.47883 * 150.16078 * 1 2 3 34 34 H 1.07999 * 125.44453 * 179.73124 * 4 3 2 35 35 H 1.08001 * 127.02430 * 179.97438 * 5 4 3 36 36 H 0.97005 * 119.99342 * 0.27141 * 9 7 6 37 37 H 1.08993 * 109.47589 * 299.99666 * 10 9 7 38 38 H 1.09003 * 109.47097 * 60.00188 * 10 9 7 39 39 H 1.09003 * 109.75067 * 252.39085 * 14 13 11 40 40 H 1.08996 * 109.74999 * 13.12548 * 14 13 11 41 41 H 1.08999 * 110.36280 * 207.86279 * 17 15 14 42 42 H 1.09008 * 110.36644 * 330.06488 * 17 15 14 43 43 H 1.09003 * 110.90427 * 241.33705 * 18 17 15 44 44 H 1.09000 * 110.55029 * 118.52288 * 18 17 15 45 45 H 1.09003 * 109.75032 * 346.87219 * 21 13 11 46 46 H 1.08999 * 109.75827 * 107.55964 * 21 13 11 47 47 H 0.96997 * 119.99598 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0839 0.0000 4 6 3.5859 0.7389 -0.0055 5 6 3.6848 -0.5992 -0.0041 6 6 2.3049 -1.1065 0.0030 7 6 1.8738 -2.5158 0.0062 8 8 0.6888 -2.7891 0.0116 9 7 2.7928 -3.5017 -0.0026 10 6 2.3641 -4.9025 -0.0055 11 6 3.5758 -5.7985 -0.0149 12 8 4.6879 -5.3146 -0.0192 13 7 3.4236 -7.1377 -0.0195 14 6 2.0817 -7.7415 -0.0092 15 6 2.0497 -8.8387 -1.0941 16 1 1.0714 -9.3115 -1.1813 17 6 2.5131 -8.2065 -2.4259 18 6 4.0618 -8.3802 -2.4377 19 6 4.3696 -9.1025 -1.1064 20 1 5.2182 -9.7812 -1.1931 21 6 4.5959 -8.0272 -0.0281 22 7 3.1156 -9.8140 -0.7595 23 6 2.9749 -11.0770 -0.2494 24 1 3.8051 -11.7672 -0.2795 25 6 1.7652 -11.4703 0.3064 26 7 0.8185 -10.5809 0.5187 27 14 1.4808 -13.2618 0.7527 28 1 2.6916 -14.0536 0.4175 29 1 1.2053 -13.3716 2.2078 30 1 0.3198 -13.7841 -0.0117 31 1 -0.3633 0.0029 1.0277 32 1 -0.3633 0.8886 -0.5163 33 1 -0.3635 -0.8914 -0.5113 34 1 4.4173 1.4283 -0.0108 35 1 4.5927 -1.1842 -0.0079 36 1 3.7380 -3.2835 -0.0070 37 1 1.7714 -5.1030 0.8870 38 1 1.7616 -5.0963 -0.8930 39 1 1.8827 -8.1802 0.9686 40 1 1.3337 -6.9806 -0.2315 41 1 2.0672 -8.7317 -3.2705 42 1 2.2496 -7.1491 -2.4559 43 1 4.5616 -7.4120 -2.4684 44 1 4.3715 -8.9949 -3.2829 45 1 5.4923 -7.4530 -0.2628 46 1 4.7066 -8.5003 0.9476 47 1 -0.0267 -10.8556 0.9074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493915148.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:00 Heat of formation + Delta-G solvation = -16.049270 kcal Electronic energy + Delta-G solvation = -31041.594784 eV Core-core repulsion = 26806.218961 eV Total energy + Delta-G solvation = -4235.375823 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.79768 -40.30110 -39.27264 -37.86032 -34.48093 -33.85601 -33.22998 -32.48675 -32.06644 -30.76533 -29.28090 -28.52118 -26.94416 -25.79691 -23.97459 -23.73069 -23.07006 -21.25650 -20.25641 -19.84867 -19.68917 -18.66636 -18.22938 -16.97210 -16.59249 -16.31264 -16.08403 -15.92402 -15.46111 -15.03784 -14.93857 -14.70800 -14.21246 -13.96390 -13.71166 -13.52439 -13.28317 -13.14988 -13.09273 -13.07527 -12.86572 -12.58637 -12.45463 -11.97068 -11.81909 -11.74886 -11.68224 -11.13845 -10.94782 -10.82549 -10.40135 -10.09213 -10.08716 -10.05491 -9.93165 -9.70094 -9.65809 -9.55382 -9.18356 -8.85553 -8.78374 -8.18975 -6.91901 -5.91583 -3.25907 1.16829 1.81829 2.54342 2.86444 2.98074 3.26852 3.31821 3.39183 3.40612 3.62424 4.27310 4.36741 4.61964 4.63594 4.76307 5.03044 5.12197 5.27145 5.28353 5.31533 5.39788 5.43395 5.51997 5.57251 5.61544 5.66051 5.74572 5.84171 5.91108 5.92919 6.01799 6.04356 6.21779 6.29699 6.32271 6.46075 6.53194 6.55553 6.66852 6.76717 6.81760 6.85670 7.16733 7.38376 7.49516 7.59842 7.89621 8.06327 8.17278 8.44387 8.99240 9.61269 10.37253 11.22057 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020956 B = 0.002395 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.815178 B =11686.997701 C =12387.549867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.078 3.922 3 O -0.177 6.177 4 C -0.041 4.041 5 C -0.185 4.185 6 C -0.244 4.244 7 C 0.591 3.409 8 O -0.543 6.543 9 N -0.708 5.708 10 C 0.104 3.896 11 C 0.502 3.498 12 O -0.565 6.565 13 N -0.582 5.582 14 C 0.098 3.902 15 C 0.168 3.832 16 H 0.121 0.879 17 C -0.135 4.135 18 C -0.125 4.125 19 C 0.134 3.866 20 H 0.078 0.922 21 C 0.102 3.898 22 N -0.583 5.583 23 C -0.225 4.225 24 H 0.077 0.923 25 C -0.003 4.003 26 N -0.914 5.914 27 Si 0.912 3.088 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.290 1.290 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.208 0.792 35 H 0.159 0.841 36 H 0.411 0.589 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 19.027 -2.409 19.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.025 3.975 3 O -0.074 6.074 4 C -0.107 4.107 5 C -0.205 4.205 6 C -0.249 4.249 7 C 0.379 3.621 8 O -0.423 6.423 9 N -0.362 5.362 10 C -0.023 4.023 11 C 0.289 3.711 12 O -0.447 6.447 13 N -0.313 5.313 14 C -0.026 4.026 15 C 0.061 3.939 16 H 0.138 0.862 17 C -0.175 4.175 18 C -0.164 4.164 19 C 0.025 3.975 20 H 0.096 0.904 21 C -0.022 4.022 22 N -0.304 5.304 23 C -0.353 4.353 24 H 0.095 0.905 25 C -0.200 4.200 26 N -0.561 5.561 27 Si 0.743 3.257 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.216 1.216 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.225 0.775 35 H 0.176 0.824 36 H 0.248 0.752 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.459 19.096 -2.275 19.388 hybrid contribution 0.550 -0.994 0.401 1.205 sum 3.009 18.102 -1.874 18.445 Atomic orbital electron populations 1.20631 0.83637 1.05143 1.04490 1.22832 0.94149 0.83051 0.97434 1.83765 1.17204 1.34966 1.71421 1.23844 0.83486 0.96374 1.06997 1.22949 0.96819 0.94604 1.06088 1.21098 0.93427 0.93667 1.16674 1.17126 0.85276 0.83662 0.76033 1.90768 1.16467 1.84050 1.50973 1.45500 1.10891 1.04806 1.75026 1.21114 0.95776 0.80620 1.04828 1.20318 0.90122 0.83325 0.77302 1.90607 1.26309 1.74701 1.53047 1.48171 1.09415 1.04169 1.69543 1.22825 0.79965 0.96069 1.03694 1.21941 0.96249 0.87662 0.88097 0.86152 1.22911 0.95492 0.99039 1.00017 1.22752 0.96517 0.99141 0.97995 1.21972 0.91833 0.91789 0.91899 0.90370 1.22427 0.87229 0.91736 1.00813 1.45162 0.99191 1.12799 1.73277 1.19056 0.98350 0.86430 1.31495 0.90479 1.24823 0.97431 0.98092 0.99669 1.69821 1.06255 1.31753 1.48239 0.86047 0.77773 0.84205 0.77685 1.20496 1.21781 1.21648 0.89266 0.90425 0.87140 0.77537 0.82360 0.75163 0.88376 0.88328 0.89417 0.91852 0.92588 0.93232 0.92602 0.92597 0.90627 0.91764 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 9.89 36.01 0.36 -0.38 16 2 C 0.08 0.86 7.37 -34.97 -0.26 0.60 16 3 O -0.18 -1.76 10.52 7.68 0.08 -1.68 16 4 C -0.04 -0.33 12.03 29.30 0.35 0.02 16 5 C -0.19 -1.80 10.60 -37.45 -0.40 -2.20 16 6 C -0.24 -2.98 6.31 -103.27 -0.65 -3.63 16 7 C 0.59 8.44 7.81 -12.54 -0.10 8.34 16 8 O -0.54 -8.90 14.85 5.27 0.08 -8.82 16 9 N -0.71 -9.83 5.52 -62.58 -0.35 -10.17 16 10 C 0.10 1.53 4.53 -5.19 -0.02 1.50 16 11 C 0.50 8.50 7.77 -10.98 -0.09 8.41 16 12 O -0.57 -10.48 15.13 5.56 0.08 -10.40 16 13 N -0.58 -10.45 2.25 -171.22 -0.38 -10.83 16 14 C 0.10 1.87 5.74 -2.99 -0.02 1.85 16 15 C 0.17 3.52 3.13 -65.43 -0.20 3.32 16 16 H 0.12 2.87 6.39 -51.93 -0.33 2.54 16 17 C -0.14 -2.43 6.22 -24.40 -0.15 -2.58 16 18 C -0.12 -2.17 6.31 -24.40 -0.15 -2.32 16 19 C 0.13 2.56 4.28 -65.63 -0.28 2.28 16 20 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 21 C 0.10 1.89 5.89 -3.18 -0.02 1.87 16 22 N -0.58 -13.26 2.81 -152.31 -0.43 -13.69 16 23 C -0.23 -5.71 10.37 -15.06 -0.16 -5.86 16 24 H 0.08 1.93 7.85 -52.48 -0.41 1.51 16 25 C 0.00 -0.08 5.41 -17.43 -0.09 -0.17 16 26 N -0.91 -23.96 10.43 55.49 0.58 -23.38 16 27 Si 0.91 20.73 29.56 -169.99 -5.03 15.71 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 30 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.11 1.14 6.49 -51.93 -0.34 0.80 16 34 H 0.21 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.16 1.28 7.74 -52.49 -0.41 0.88 16 36 H 0.41 5.42 6.61 -40.82 -0.27 5.15 16 37 H 0.10 1.44 8.05 -51.93 -0.42 1.02 16 38 H 0.10 1.42 7.60 -51.93 -0.39 1.02 16 39 H 0.09 1.94 7.82 -51.93 -0.41 1.54 16 40 H 0.06 1.06 6.08 -51.93 -0.32 0.74 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.82 7.85 -51.92 -0.41 0.41 16 43 H 0.06 0.94 7.84 -51.93 -0.41 0.53 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.08 1.34 7.11 -51.93 -0.37 0.97 16 46 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 47 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 378.69 15.07 5.71 5.71 Total: -1.00 -29.82 378.69 -8.11 -37.92 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.57 Total: 8.58 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: -1.88 Total: 11.05 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.58 Total: -58.07 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: 0.24 Total: -20.90 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.82 -8.11 -37.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493915148.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.873 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds