Wall clock time and date at job start Wed Apr 1 2020 05:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33644 * 125.80466 * 2 1 4 4 C 1.34214 * 110.91160 * 180.25168 * 3 2 1 5 5 C 1.34178 * 109.12216 * 359.76513 * 4 3 2 6 6 C 1.36417 * 125.79688 * 179.84307 * 2 1 3 7 7 C 1.47378 * 127.19319 * 0.03433 * 6 2 1 8 8 O 1.21612 * 119.99981 * 359.70873 * 7 6 2 9 9 N 1.34783 * 120.00001 * 179.43233 * 7 6 2 10 10 C 1.46496 * 119.99751 * 180.27356 * 9 7 6 11 11 C 1.50706 * 109.46745 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00204 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99723 * 180.02562 * 11 10 9 14 14 C 1.47157 * 120.71031 * 359.71697 * 13 11 10 15 15 C 1.54327 * 107.80291 * 132.68686 * 14 13 11 16 16 H 1.09002 * 112.53366 * 182.37647 * 15 14 13 17 17 C 1.54543 * 107.98306 * 306.74038 * 15 14 13 18 18 C 1.55852 * 105.00084 * 89.00456 * 17 15 14 19 19 C 1.54549 * 104.09498 * 0.02562 * 18 17 15 20 20 H 1.09002 * 112.18143 * 146.81658 * 19 18 17 21 21 C 1.47161 * 120.70682 * 180.02562 * 13 11 10 22 22 N 1.48303 * 107.10092 * 58.61830 * 15 14 13 23 23 C 1.36935 * 128.07793 * 106.57618 * 22 15 14 24 24 H 1.08003 * 120.00144 * 164.87030 * 23 22 15 25 25 C 1.38819 * 120.00163 * 344.87433 * 23 22 15 26 26 N 1.31621 * 119.99460 * 350.26140 * 25 23 22 27 27 Si 1.86795 * 120.00249 * 170.25792 * 25 23 22 28 28 H 1.48500 * 109.46984 * 0.02562 * 27 25 23 29 29 H 1.48504 * 109.46905 * 120.00035 * 27 25 23 30 30 H 1.48497 * 109.47169 * 239.99894 * 27 25 23 31 31 H 1.09007 * 109.46748 * 270.16411 * 1 2 3 32 32 H 1.09006 * 109.46978 * 30.15560 * 1 2 3 33 33 H 1.08998 * 109.47883 * 150.16078 * 1 2 3 34 34 H 1.07999 * 125.44453 * 179.73124 * 4 3 2 35 35 H 1.08001 * 127.02430 * 179.97438 * 5 4 3 36 36 H 0.97005 * 119.99342 * 0.27141 * 9 7 6 37 37 H 1.08993 * 109.47589 * 299.99666 * 10 9 7 38 38 H 1.09003 * 109.47097 * 60.00188 * 10 9 7 39 39 H 1.09003 * 109.75067 * 252.39085 * 14 13 11 40 40 H 1.08996 * 109.74999 * 13.12548 * 14 13 11 41 41 H 1.08999 * 110.36280 * 207.86279 * 17 15 14 42 42 H 1.09008 * 110.36644 * 330.06488 * 17 15 14 43 43 H 1.09003 * 110.90427 * 241.33705 * 18 17 15 44 44 H 1.09000 * 110.55029 * 118.52288 * 18 17 15 45 45 H 1.09003 * 109.75032 * 346.87219 * 21 13 11 46 46 H 1.08999 * 109.75827 * 107.55964 * 21 13 11 47 47 H 0.96997 * 119.99598 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0839 0.0000 4 6 3.5859 0.7389 -0.0055 5 6 3.6848 -0.5992 -0.0041 6 6 2.3049 -1.1065 0.0030 7 6 1.8738 -2.5158 0.0062 8 8 0.6888 -2.7891 0.0116 9 7 2.7928 -3.5017 -0.0026 10 6 2.3641 -4.9025 -0.0055 11 6 3.5758 -5.7985 -0.0149 12 8 4.6879 -5.3146 -0.0192 13 7 3.4236 -7.1377 -0.0195 14 6 2.0817 -7.7415 -0.0092 15 6 2.0497 -8.8387 -1.0941 16 1 1.0714 -9.3115 -1.1813 17 6 2.5131 -8.2065 -2.4259 18 6 4.0618 -8.3802 -2.4377 19 6 4.3696 -9.1025 -1.1064 20 1 5.2182 -9.7812 -1.1931 21 6 4.5959 -8.0272 -0.0281 22 7 3.1156 -9.8140 -0.7595 23 6 2.9749 -11.0770 -0.2494 24 1 3.8051 -11.7672 -0.2795 25 6 1.7652 -11.4703 0.3064 26 7 0.8185 -10.5809 0.5187 27 14 1.4808 -13.2618 0.7527 28 1 2.6916 -14.0536 0.4175 29 1 1.2053 -13.3716 2.2078 30 1 0.3198 -13.7841 -0.0117 31 1 -0.3633 0.0029 1.0277 32 1 -0.3633 0.8886 -0.5163 33 1 -0.3635 -0.8914 -0.5113 34 1 4.4173 1.4283 -0.0108 35 1 4.5927 -1.1842 -0.0079 36 1 3.7380 -3.2835 -0.0070 37 1 1.7714 -5.1030 0.8870 38 1 1.7616 -5.0963 -0.8930 39 1 1.8827 -8.1802 0.9686 40 1 1.3337 -6.9806 -0.2315 41 1 2.0672 -8.7317 -3.2705 42 1 2.2496 -7.1491 -2.4559 43 1 4.5616 -7.4120 -2.4684 44 1 4.3715 -8.9949 -3.2829 45 1 5.4923 -7.4530 -0.2628 46 1 4.7066 -8.5003 0.9476 47 1 -0.0267 -10.8556 0.9074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493915148.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:59 Heat of formation + Delta-G solvation = -33.894335 kcal Electronic energy + Delta-G solvation = -31042.368604 eV Core-core repulsion = 26806.218961 eV Total energy + Delta-G solvation = -4236.149643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.54453 -41.73223 -40.48354 -39.31561 -35.66246 -35.45516 -34.25985 -34.01380 -32.78857 -32.29175 -31.01575 -29.72868 -27.92288 -27.19249 -25.45042 -25.41376 -24.06834 -22.11413 -21.57090 -21.23848 -20.97392 -20.21859 -19.22936 -18.35538 -17.76393 -17.44504 -17.26397 -17.14872 -16.80585 -16.52276 -16.20835 -16.00593 -15.57344 -15.26480 -15.16961 -14.70457 -14.51825 -14.44413 -14.05473 -14.00986 -13.86605 -13.73660 -13.71470 -13.54308 -13.25594 -13.21249 -12.86682 -12.74335 -12.67547 -12.55251 -11.94584 -11.81285 -11.50767 -11.45926 -11.19892 -11.16868 -11.05442 -10.86840 -10.64883 -10.30005 -9.78313 -9.53642 -8.70761 -7.85252 -5.19092 0.30043 1.11461 1.46399 1.49858 1.52044 1.59597 1.64989 1.93454 2.25908 2.35495 2.51929 3.33677 3.35742 3.50956 3.60981 3.76462 3.89020 4.06829 4.11654 4.22028 4.23320 4.27906 4.32456 4.38272 4.43128 4.53159 4.64030 4.64520 4.71587 4.76312 4.81581 4.88592 4.97140 5.00818 5.06926 5.10465 5.16301 5.25256 5.32059 5.36331 5.38279 5.55818 5.60529 5.80002 6.02173 6.23647 6.41206 6.46399 7.00464 7.08884 7.09714 7.73295 8.52091 9.26616 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020956 B = 0.002395 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.815178 B =11686.997701 C =12387.549867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.074 3.926 3 O -0.179 6.179 4 C -0.026 4.026 5 C -0.202 4.202 6 C -0.274 4.274 7 C 0.589 3.411 8 O -0.571 6.571 9 N -0.705 5.705 10 C 0.109 3.891 11 C 0.510 3.490 12 O -0.576 6.576 13 N -0.584 5.584 14 C 0.114 3.886 15 C 0.163 3.837 16 H 0.088 0.912 17 C -0.127 4.127 18 C -0.113 4.113 19 C 0.129 3.871 20 H 0.084 0.916 21 C 0.109 3.891 22 N -0.603 5.603 23 C -0.232 4.232 24 H 0.075 0.925 25 C -0.051 4.051 26 N -0.932 5.932 27 Si 0.968 3.032 28 H -0.272 1.272 29 H -0.298 1.298 30 H -0.294 1.294 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.251 0.749 35 H 0.171 0.829 36 H 0.415 0.585 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.045 0.955 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.161 21.065 -3.211 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.021 3.979 3 O -0.075 6.075 4 C -0.091 4.091 5 C -0.221 4.221 6 C -0.278 4.278 7 C 0.379 3.621 8 O -0.452 6.452 9 N -0.359 5.359 10 C -0.018 4.018 11 C 0.298 3.702 12 O -0.458 6.458 13 N -0.315 5.315 14 C -0.010 4.010 15 C 0.055 3.945 16 H 0.106 0.894 17 C -0.166 4.166 18 C -0.152 4.152 19 C 0.022 3.978 20 H 0.102 0.898 21 C -0.015 4.015 22 N -0.325 5.325 23 C -0.361 4.361 24 H 0.093 0.907 25 C -0.245 4.245 26 N -0.580 5.580 27 Si 0.798 3.202 28 H -0.197 1.197 29 H -0.225 1.225 30 H -0.222 1.222 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.266 0.734 35 H 0.189 0.811 36 H 0.253 0.747 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.680 21.160 -3.093 21.699 hybrid contribution 0.251 -1.554 0.661 1.707 sum 3.932 19.606 -2.432 20.144 Atomic orbital electron populations 1.20655 0.82703 1.05417 1.05053 1.23132 0.94969 0.83071 0.96730 1.83796 1.18018 1.34536 1.71180 1.24667 0.83503 0.96608 1.04308 1.23152 0.96158 0.95527 1.07283 1.21138 0.95256 0.92731 1.18686 1.17453 0.84862 0.84536 0.75258 1.90749 1.17521 1.84610 1.52344 1.45456 1.11099 1.04300 1.75014 1.21028 0.94689 0.80819 1.05225 1.20543 0.90525 0.82860 0.76280 1.90603 1.27062 1.74755 1.53377 1.48104 1.08705 1.04587 1.70065 1.22475 0.81153 0.96203 1.01211 1.21876 0.94569 0.87773 0.90239 0.89439 1.22816 0.95941 0.99777 0.98079 1.22661 0.95877 0.99605 0.97065 1.22149 0.90762 0.91938 0.92991 0.89773 1.22273 0.87888 0.91770 0.99617 1.45332 1.01111 1.12652 1.73387 1.19279 0.98207 0.87756 1.30868 0.90688 1.25438 0.97628 1.00952 1.00521 1.69974 1.06186 1.32709 1.49097 0.85180 0.77452 0.80955 0.76644 1.19697 1.22510 1.22156 0.88509 0.88058 0.88874 0.73352 0.81148 0.74678 0.88322 0.87559 0.92959 0.89483 0.92430 0.91461 0.91425 0.91503 0.89368 0.93665 0.94200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 9.89 71.24 0.70 -0.67 16 2 C 0.07 1.53 7.37 25.26 0.19 1.72 16 3 O -0.18 -3.14 10.52 4.56 0.05 -3.09 16 4 C -0.03 -0.34 12.03 66.89 0.80 0.46 16 5 C -0.20 -3.51 10.60 23.65 0.25 -3.26 16 6 C -0.27 -6.40 6.31 -18.99 -0.12 -6.52 16 7 C 0.59 16.52 7.81 86.65 0.68 17.20 16 8 O -0.57 -18.67 14.85 -4.07 -0.06 -18.73 16 9 N -0.70 -18.82 5.52 -470.15 -2.60 -21.42 16 10 C 0.11 3.10 4.53 85.64 0.39 3.49 16 11 C 0.51 16.51 7.77 87.66 0.68 17.19 16 12 O -0.58 -20.30 15.13 -3.02 -0.05 -20.35 16 13 N -0.58 -20.45 2.25 -814.01 -1.83 -22.28 16 14 C 0.11 4.34 5.74 86.70 0.50 4.84 16 15 C 0.16 6.84 3.13 45.62 0.14 6.98 16 16 H 0.09 4.29 6.39 -2.39 -0.02 4.27 16 17 C -0.13 -4.37 6.22 32.11 0.20 -4.17 16 18 C -0.11 -3.67 6.31 32.11 0.20 -3.47 16 19 C 0.13 4.82 4.28 45.49 0.19 5.02 16 20 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 21 C 0.11 3.94 5.89 86.57 0.51 4.45 16 22 N -0.60 -27.53 2.81 -635.79 -1.78 -29.31 16 23 C -0.23 -11.89 10.37 84.04 0.87 -11.02 16 24 H 0.08 3.77 7.85 -2.91 -0.02 3.75 16 25 C -0.05 -2.65 5.41 84.86 0.46 -2.19 16 26 N -0.93 -50.22 10.43 21.65 0.23 -50.00 16 27 Si 0.97 43.33 29.56 68.60 2.03 45.36 16 28 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 29 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 30 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 31 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.09 1.91 6.49 -2.39 -0.02 1.90 16 34 H 0.25 0.83 8.06 -2.91 -0.02 0.81 16 35 H 0.17 2.40 7.74 -2.91 -0.02 2.38 16 36 H 0.41 10.40 6.61 -92.70 -0.61 9.79 16 37 H 0.10 2.83 8.05 -2.39 -0.02 2.81 16 38 H 0.11 2.89 7.60 -2.39 -0.02 2.87 16 39 H 0.05 2.38 7.82 -2.39 -0.02 2.37 16 40 H 0.09 2.86 6.08 -2.39 -0.01 2.85 16 41 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.07 2.07 7.85 -2.38 -0.02 2.05 16 43 H 0.07 2.06 7.84 -2.39 -0.02 2.04 16 44 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.09 2.98 7.11 -2.39 -0.02 2.96 16 46 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 47 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 Total: -1.00 -64.68 378.69 3.03 -61.65 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.40 Total: 28.13 kcal Atomic # 6 Polarization: 23.40 SS G_CDS: 6.65 Total: 30.05 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -5.98 Total: -123.01 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -0.06 Total: -42.17 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -64.68 3.03 -61.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493915148.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.754 kcal (2) G-P(sol) polarization free energy of solvation -64.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds