Wall clock time and date at job start Wed Apr 1 2020 05:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 110.27218 * 2 1 4 4 C 1.34778 * 119.99864 * 300.69637 * 3 2 1 5 5 O 1.21773 * 120.00006 * 0.02562 * 4 3 2 6 6 C 1.41548 * 119.99734 * 180.02562 * 4 3 2 7 7 C 1.35621 * 120.00294 * 282.97068 * 6 4 3 8 8 C 1.41603 * 119.99975 * 4.23286 * 7 6 4 9 9 C 1.37953 * 126.10615 * 185.11482 * 8 7 6 10 10 C 1.40314 * 106.52884 * 179.97438 * 9 8 7 11 11 C 1.35152 * 107.20617 * 0.02562 * 10 9 8 12 12 O 1.34021 * 109.03526 * 359.75750 * 11 10 9 13 13 C 1.54592 * 110.30999 * 237.90938 * 2 1 3 14 14 C 1.55200 * 102.80095 * 219.05164 * 13 2 1 15 15 N 1.48530 * 103.23459 * 37.43401 * 14 13 2 16 16 C 1.46904 * 110.99716 * 200.25762 * 15 14 13 17 17 C 1.50701 * 109.47013 * 287.39505 * 16 15 14 18 18 O 1.21288 * 120.00371 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99860 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99941 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00119 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00110 * 179.97438 * 20 19 17 23 23 N 1.31414 * 120.00107 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00079 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47048 * 90.00781 * 24 22 20 26 26 H 1.48502 * 109.47538 * 210.00493 * 24 22 20 27 27 H 1.48500 * 109.47352 * 330.00839 * 24 22 20 28 28 C 1.47900 * 105.82353 * 320.76779 * 15 14 13 29 29 H 1.09005 * 109.46917 * 59.30362 * 1 2 3 30 30 H 1.08998 * 109.46995 * 179.29803 * 1 2 3 31 31 H 1.08999 * 109.47251 * 299.30158 * 1 2 3 32 32 H 0.97004 * 119.99889 * 120.70093 * 3 2 1 33 33 H 1.08006 * 119.99690 * 102.97048 * 6 4 3 34 34 H 1.08001 * 120.00101 * 183.95603 * 7 6 4 35 35 H 1.08003 * 126.73412 * 359.97438 * 9 8 7 36 36 H 1.07997 * 126.39893 * 179.97438 * 10 9 8 37 37 H 1.08000 * 125.48428 * 179.97438 * 11 10 9 38 38 H 1.08997 * 110.72390 * 337.38454 * 13 2 1 39 39 H 1.08999 * 110.72683 * 100.67179 * 13 2 1 40 40 H 1.09002 * 110.67804 * 278.98522 * 14 13 2 41 41 H 1.09001 * 110.78688 * 155.93131 * 14 13 2 42 42 H 1.08996 * 109.47137 * 47.39704 * 16 15 14 43 43 H 1.09002 * 109.47270 * 167.40040 * 16 15 14 44 44 H 0.96999 * 120.00061 * 359.97438 * 19 17 16 45 45 H 0.96993 * 120.00350 * 179.97438 * 23 22 20 46 46 H 1.08997 * 109.91877 * 265.97755 * 28 15 14 47 47 H 1.09002 * 109.91435 * 144.68638 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3743 0.0000 4 6 1.7122 2.2128 -1.0037 5 8 0.9958 1.8283 -1.9102 6 6 2.2031 3.5405 -1.0039 7 6 1.6416 4.4713 -0.1929 8 6 0.6251 4.0956 0.7185 9 6 -0.0980 4.9484 1.5266 10 6 -0.9886 4.1470 2.2568 11 6 -0.7794 2.8673 1.8759 12 8 0.1872 2.8400 0.9479 13 6 2.0666 -0.7702 -1.2283 14 6 3.2882 -1.5326 -0.6493 15 7 2.8333 -1.9216 0.7100 16 6 3.9767 -2.2223 1.5818 17 6 4.5876 -3.5380 1.1732 18 8 4.1170 -4.1634 0.2466 19 7 5.6568 -4.0197 1.8374 20 6 6.2128 -5.2164 1.4654 21 1 5.7943 -5.7728 0.6398 22 6 7.3154 -5.7128 2.1498 23 7 7.8250 -5.0355 3.1541 24 14 8.0726 -7.3436 1.6433 25 1 9.1252 -7.1051 0.6232 26 1 8.6745 -8.0003 2.8314 27 1 7.0201 -8.2220 1.0724 28 6 2.0645 -0.7672 1.2236 29 1 -0.3633 0.5246 -0.8837 30 1 -0.3633 -1.0276 -0.0126 31 1 -0.3634 0.5029 0.8962 32 1 2.6080 1.6806 0.7223 33 1 3.0248 3.8122 -1.6500 34 1 1.9730 5.4982 -0.2390 35 1 0.0020 6.0222 1.5856 36 1 -1.7066 4.4888 2.9876 37 1 -1.3086 2.0057 2.2553 38 1 1.3180 -1.4681 -1.6032 39 1 2.3776 -0.0789 -2.0115 40 1 4.1581 -0.8784 -0.5914 41 1 3.5119 -2.4159 -1.2476 42 1 4.7215 -1.4318 1.4899 43 1 3.6386 -2.2845 2.6162 44 1 6.0333 -3.5194 2.5782 45 1 8.5945 -5.3822 3.6321 46 1 2.7147 -0.1204 1.8125 47 1 1.2326 -1.1174 1.8347 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716833808.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:34 Heat of formation + Delta-G solvation = -38.713432 kcal Electronic energy + Delta-G solvation = -30862.840231 eV Core-core repulsion = 26626.481617 eV Total energy + Delta-G solvation = -4236.358615 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.44309 -41.56493 -40.28785 -39.08996 -36.06539 -35.49503 -35.37970 -33.91380 -33.28396 -32.34454 -30.73756 -29.68266 -28.90633 -26.89060 -25.60543 -25.03403 -22.89100 -22.64913 -22.18715 -21.06140 -20.88259 -20.25316 -19.86709 -18.76135 -17.90150 -17.36747 -17.06421 -16.90513 -16.68497 -16.56765 -16.18293 -16.06361 -15.92805 -15.63285 -14.98773 -14.70956 -14.67060 -14.20898 -14.13834 -14.02076 -13.70402 -13.63682 -13.46030 -13.35529 -13.20489 -12.95993 -12.91091 -12.88326 -12.42518 -12.38550 -12.37361 -12.12068 -11.95748 -11.85520 -11.59430 -11.47975 -10.80008 -10.71751 -10.31453 -10.01810 -9.98916 -9.34668 -8.85987 -8.46103 -5.94296 -0.21878 1.37598 1.37958 1.41271 1.53918 1.60862 1.97148 2.07090 2.15059 2.28042 2.42452 2.86441 3.20438 3.32248 3.48747 3.71529 3.81252 3.94618 4.02401 4.12425 4.16334 4.21675 4.28387 4.31660 4.43190 4.50455 4.56839 4.64910 4.76678 4.80020 4.81178 4.87462 4.93257 4.94668 5.08167 5.08723 5.10217 5.18513 5.31605 5.39326 5.41517 5.57027 5.63821 5.82336 5.94224 6.09014 6.19972 6.58265 6.62188 7.14388 7.28283 7.57891 8.14603 8.71455 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021535 B = 0.002149 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.896100 B =13024.419984 C =13296.640500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.176 3.824 3 N -0.694 5.694 4 C 0.557 3.443 5 O -0.578 6.578 6 C -0.212 4.212 7 C -0.019 4.019 8 C -0.049 4.049 9 C -0.167 4.167 10 C -0.229 4.229 11 C -0.030 4.030 12 O -0.167 6.167 13 C -0.112 4.112 14 C 0.046 3.954 15 N -0.509 5.509 16 C 0.049 3.951 17 C 0.442 3.558 18 O -0.617 6.617 19 N -0.575 5.575 20 C -0.331 4.331 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.274 1.274 28 C 0.042 3.958 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.407 0.593 33 H 0.173 0.827 34 H 0.193 0.807 35 H 0.174 0.826 36 H 0.168 0.832 37 H 0.222 0.778 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.115 0.885 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.071 0.929 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.700 25.294 1.674 28.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.089 3.911 3 N -0.346 5.346 4 C 0.346 3.654 5 O -0.459 6.459 6 C -0.232 4.232 7 C -0.037 4.037 8 C -0.098 4.098 9 C -0.186 4.186 10 C -0.248 4.248 11 C -0.099 4.099 12 O -0.062 6.062 13 C -0.151 4.151 14 C -0.082 4.082 15 N -0.233 5.233 16 C -0.082 4.082 17 C 0.229 3.771 18 O -0.502 6.502 19 N -0.213 5.213 20 C -0.460 4.460 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.086 4.086 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.244 0.756 33 H 0.190 0.810 34 H 0.210 0.790 35 H 0.191 0.809 36 H 0.186 0.814 37 H 0.238 0.762 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.133 0.867 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.548 23.819 0.409 27.913 hybrid contribution 1.397 0.065 0.501 1.486 sum -13.151 23.884 0.910 27.280 Atomic orbital electron populations 1.22052 0.92892 1.02127 1.02863 1.20929 0.94878 0.81073 0.94240 1.46192 1.51485 1.11118 1.25786 1.17562 0.79569 0.86930 0.81295 1.90837 1.39015 1.78281 1.37770 1.22382 1.04255 0.92787 1.03784 1.20855 0.91383 1.01187 0.90310 1.20449 1.02677 0.82538 1.04115 1.22647 0.97051 1.01450 0.97475 1.22088 1.04356 0.92972 1.05378 1.24838 0.92104 1.00886 0.92066 1.84314 1.43848 1.29887 1.48199 1.22771 0.96912 0.98039 0.97423 1.23174 0.96397 0.98014 0.90632 1.64433 1.20617 1.36381 1.01910 1.21950 0.93189 0.94083 0.98969 1.20779 0.82165 0.89251 0.84897 1.90491 1.64310 1.62542 1.32876 1.41917 1.27343 1.20496 1.31561 1.19625 1.11802 0.98520 1.16095 0.90548 1.26001 0.96804 1.02764 0.95688 1.69662 1.24748 1.40433 1.21338 0.84960 0.78165 0.77399 0.78011 1.19692 1.19431 1.19935 1.23236 0.98906 0.90695 0.95769 0.92596 0.91774 0.90847 0.75644 0.80996 0.79045 0.80855 0.81418 0.76158 0.91130 0.91246 0.93946 0.92327 0.91023 0.86747 0.76994 0.91323 0.91109 0.87895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 7.50 71.98 0.54 -2.63 16 2 C 0.18 4.07 0.94 4.48 0.00 4.07 16 3 N -0.69 -13.62 3.69 -427.82 -1.58 -15.20 16 4 C 0.56 12.60 4.44 85.06 0.38 12.97 16 5 O -0.58 -18.05 13.95 -4.58 -0.06 -18.12 16 6 C -0.21 -3.22 9.75 22.48 0.22 -3.00 16 7 C -0.02 -0.21 9.96 22.49 0.22 0.01 16 8 C -0.05 -0.72 6.69 23.03 0.15 -0.57 16 9 C -0.17 -1.99 10.90 22.71 0.25 -1.74 16 10 C -0.23 -2.67 10.87 22.06 0.24 -2.43 16 11 C -0.03 -0.39 11.21 67.11 0.75 0.36 16 12 O -0.17 -2.84 5.76 -6.19 -0.04 -2.88 16 13 C -0.11 -3.31 5.85 31.89 0.19 -3.12 16 14 C 0.05 1.54 5.94 86.74 0.52 2.05 16 15 N -0.51 -16.56 4.91 -887.02 -4.35 -20.91 16 16 C 0.05 1.69 5.19 85.56 0.44 2.13 16 17 C 0.44 21.26 7.61 87.66 0.67 21.93 16 18 O -0.62 -34.89 14.64 -3.05 -0.04 -34.93 16 19 N -0.58 -29.68 5.29 -306.99 -1.62 -31.30 16 20 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 21 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 23 N -0.92 -49.72 13.05 21.66 0.28 -49.43 16 24 Si 0.99 43.36 29.55 68.60 2.03 45.38 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 28 C 0.04 0.95 6.12 86.45 0.53 1.48 16 29 H 0.06 1.53 6.16 -2.38 -0.01 1.52 16 30 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 31 H 0.07 1.30 6.01 -2.39 -0.01 1.29 16 32 H 0.41 6.29 8.05 -92.71 -0.75 5.54 16 33 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.19 0.63 8.06 -2.91 -0.02 0.61 16 35 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 37 H 0.22 1.63 7.74 -2.91 -0.02 1.61 16 38 H 0.07 2.22 7.86 -2.39 -0.02 2.20 16 39 H 0.07 2.14 6.68 -2.39 -0.02 2.12 16 40 H 0.04 1.35 7.81 -2.39 -0.02 1.33 16 41 H 0.06 2.44 7.10 -2.39 -0.02 2.42 16 42 H 0.07 2.15 7.83 -2.39 -0.02 2.13 16 43 H 0.11 3.33 8.08 -2.39 -0.02 3.31 16 44 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 45 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 46 H 0.07 1.29 7.09 -2.39 -0.02 1.28 16 47 H 0.10 2.12 7.68 -2.39 -0.02 2.10 16 Total: -1.00 -78.02 382.15 0.54 -77.49 By element: Atomic # 1 Polarization: 37.22 SS G_CDS: -0.46 Total: 36.76 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 6.38 Total: 13.14 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -7.27 Total: -116.85 kcal Atomic # 8 Polarization: -55.78 SS G_CDS: -0.14 Total: -55.93 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -78.02 0.54 -77.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716833808.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.774 kcal (2) G-P(sol) polarization free energy of solvation -78.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds