Wall clock time and date at job start Wed Apr 1 2020 05:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 110.35300 * 2 1 4 4 C 1.34783 * 119.99843 * 57.85386 * 3 2 1 5 5 O 1.21778 * 119.99921 * 359.97438 * 4 3 2 6 6 C 1.41550 * 119.99776 * 179.97438 * 4 3 2 7 7 C 1.35627 * 119.99998 * 180.02562 * 6 4 3 8 8 C 1.41599 * 120.00199 * 180.02562 * 7 6 4 9 9 C 1.37956 * 126.10394 * 179.71853 * 8 7 6 10 10 C 1.40315 * 106.52539 * 179.84893 * 9 8 7 11 11 C 1.35150 * 107.20661 * 0.40513 * 10 9 8 12 12 O 1.34016 * 109.03648 * 359.74691 * 11 10 9 13 13 C 1.54601 * 110.30588 * 122.13649 * 2 1 3 14 14 C 1.54938 * 102.91726 * 140.87380 * 13 2 1 15 15 N 1.48528 * 103.23097 * 322.58954 * 14 13 2 16 16 C 1.46903 * 111.00089 * 159.72013 * 15 14 13 17 17 C 1.50694 * 109.47066 * 52.60302 * 16 15 14 18 18 O 1.21297 * 120.00199 * 359.97438 * 17 16 15 19 19 N 1.34784 * 119.99988 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99735 * 179.72439 * 19 17 16 21 21 H 1.07998 * 120.00618 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99464 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00058 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99669 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47319 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.46816 * 120.00520 * 24 22 20 27 27 H 1.48501 * 109.47099 * 240.00173 * 24 22 20 28 28 C 1.47897 * 105.82095 * 39.20531 * 15 14 13 29 29 H 1.08997 * 109.46915 * 182.14109 * 1 2 3 30 30 H 1.09000 * 109.47580 * 302.14594 * 1 2 3 31 31 H 1.09007 * 109.46744 * 62.14711 * 1 2 3 32 32 H 0.96995 * 120.00307 * 237.85531 * 3 2 1 33 33 H 1.07997 * 120.00075 * 0.02562 * 6 4 3 34 34 H 1.08007 * 119.99688 * 359.97438 * 7 6 4 35 35 H 1.07997 * 126.73673 * 359.97438 * 9 8 7 36 36 H 1.08001 * 126.39614 * 180.13229 * 10 9 8 37 37 H 1.08005 * 125.48463 * 179.76218 * 11 10 9 38 38 H 1.08993 * 110.73005 * 259.23243 * 13 2 1 39 39 H 1.09000 * 110.72025 * 22.34691 * 13 2 1 40 40 H 1.09006 * 110.66744 * 204.15056 * 14 13 2 41 41 H 1.09004 * 110.66538 * 81.02669 * 14 13 2 42 42 H 1.08998 * 109.46809 * 292.60403 * 16 15 14 43 43 H 1.09002 * 109.47056 * 172.60144 * 16 15 14 44 44 H 0.97000 * 119.99339 * 0.02562 * 19 17 16 45 45 H 0.97000 * 119.99610 * 179.97438 * 23 22 20 46 46 H 1.08998 * 109.91818 * 94.02307 * 28 15 14 47 47 H 1.09000 * 109.92045 * 215.12021 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0395 1.3736 0.0000 4 6 1.6916 2.2214 0.9883 5 8 0.9533 1.8458 1.8810 6 6 2.1844 3.5484 0.9886 7 6 1.8347 4.4014 1.9834 8 6 2.3272 5.7290 1.9834 9 6 2.0499 6.6988 2.9245 10 6 2.7487 7.8497 2.5294 11 6 3.4020 7.5477 1.3855 12 8 3.1469 6.2730 1.0598 13 6 2.0665 -0.7713 1.2278 14 6 3.2854 -1.5347 0.6517 15 7 2.8313 -1.9236 -0.7080 16 6 3.9752 -2.2262 -1.5786 17 6 4.8664 -3.2369 -0.9039 18 8 4.5774 -3.6628 0.1945 19 7 5.9853 -3.6668 -1.5204 20 6 6.7989 -4.5820 -0.9041 21 1 6.5433 -4.9588 0.0752 22 6 7.9521 -5.0255 -1.5400 23 7 8.2629 -4.5674 -2.7317 24 14 9.0605 -6.2731 -0.7006 25 1 8.4925 -6.6270 0.6251 26 1 9.1566 -7.4939 -1.5405 27 1 10.4139 -5.6896 -0.5188 28 6 2.0646 -0.7684 -1.2227 29 1 -0.3633 -1.0269 0.0384 30 1 -0.3634 0.5468 0.8701 31 1 -0.3633 0.4802 -0.9087 32 1 2.6272 1.6729 -0.7112 33 1 2.8387 3.8815 0.1967 34 1 1.1799 4.0682 2.7751 35 1 1.4203 6.5925 3.7955 36 1 2.7588 8.8006 3.0413 37 1 4.0291 8.2247 0.8242 38 1 2.3790 -0.0806 2.0109 39 1 1.3160 -1.4660 1.6049 40 1 3.5046 -2.4182 1.2514 41 1 4.1563 -0.8817 0.5943 42 1 4.5395 -1.3130 -1.7676 43 1 3.6150 -2.6330 -2.5236 44 1 6.2169 -3.3253 -2.3982 45 1 9.0681 -4.8768 -3.1754 46 1 2.7163 -0.1226 -1.8112 47 1 1.2348 -1.1175 -1.8374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716833809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:38 Heat of formation + Delta-G solvation = -19.574462 kcal Electronic energy + Delta-G solvation = -29531.522997 eV Core-core repulsion = 25295.994310 eV Total energy + Delta-G solvation = -4235.528687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.97063 -40.62960 -38.95628 -37.60542 -34.79002 -34.33977 -33.78706 -33.47852 -31.73479 -31.21993 -29.63063 -29.05008 -27.48711 -25.46637 -24.64823 -23.71224 -22.34217 -21.68040 -21.03444 -19.84620 -19.60159 -19.17758 -17.93862 -17.84384 -17.29163 -16.51084 -16.35832 -15.92314 -15.38717 -15.10260 -14.92298 -14.81089 -14.52636 -14.28898 -13.94641 -13.48118 -13.45146 -13.35607 -13.24501 -13.08093 -12.82064 -12.53208 -12.47941 -12.31027 -12.01646 -11.75312 -11.55275 -11.23821 -11.14363 -11.06432 -10.91884 -10.76066 -10.70134 -10.34684 -10.33675 -10.24252 -9.86203 -9.51937 -9.13113 -8.39932 -8.35564 -8.03030 -7.91105 -6.43714 -3.84374 0.07370 1.71717 2.30054 2.51466 3.08723 3.15219 3.25077 3.26138 3.33468 3.87537 4.08649 4.26707 4.34674 4.45134 4.48643 4.54524 4.75853 4.81871 4.96829 5.00027 5.10840 5.21237 5.23445 5.32320 5.41107 5.54866 5.57526 5.60371 5.64983 5.70798 5.75344 5.81512 5.88078 5.91868 6.00992 6.02323 6.15692 6.23603 6.29849 6.34759 6.54802 6.61398 6.72865 7.21104 7.26920 7.41735 7.54063 8.04496 8.10875 8.59686 9.16344 9.51754 10.03488 10.74034 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013140 B = 0.001945 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.442253 B =14393.148857 C =15720.199199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.163 3.837 3 N -0.715 5.715 4 C 0.550 3.450 5 O -0.540 6.540 6 C -0.204 4.204 7 C 0.008 3.992 8 C -0.010 4.010 9 C -0.164 4.164 10 C -0.219 4.219 11 C -0.020 4.020 12 O -0.166 6.166 13 C -0.123 4.123 14 C 0.038 3.962 15 N -0.492 5.492 16 C 0.036 3.964 17 C 0.442 3.558 18 O -0.579 6.579 19 N -0.562 5.562 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.034 3.966 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.398 0.602 33 H 0.129 0.871 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.207 0.793 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.119 0.881 41 H 0.033 0.967 42 H 0.047 0.953 43 H 0.090 0.910 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.046 0.954 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.303 24.323 3.545 27.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.077 3.923 3 N -0.366 5.366 4 C 0.340 3.660 5 O -0.420 6.420 6 C -0.225 4.225 7 C -0.012 4.012 8 C -0.059 4.059 9 C -0.183 4.183 10 C -0.238 4.238 11 C -0.089 4.089 12 O -0.061 6.061 13 C -0.162 4.162 14 C -0.089 4.089 15 N -0.216 5.216 16 C -0.096 4.096 17 C 0.228 3.772 18 O -0.463 6.463 19 N -0.198 5.198 20 C -0.428 4.428 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.095 4.095 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.233 0.767 33 H 0.147 0.853 34 H 0.179 0.821 35 H 0.175 0.825 36 H 0.171 0.829 37 H 0.223 0.777 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.137 0.863 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.109 0.891 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.052 23.033 4.523 26.858 hybrid contribution 1.778 0.799 -0.785 2.101 sum -11.275 23.832 3.739 26.629 Atomic orbital electron populations 1.22163 0.93247 1.02960 1.02853 1.21188 0.94581 0.80308 0.96181 1.46214 1.50852 1.12247 1.27335 1.16912 0.81218 0.85741 0.82090 1.90808 1.36663 1.78439 1.36121 1.22138 1.04321 0.94565 1.01483 1.20668 0.95194 0.87370 0.97968 1.19919 0.99046 0.95164 0.91763 1.22398 1.02725 0.92479 1.00707 1.21811 1.02533 1.00735 0.98738 1.24355 1.02625 0.83466 0.98435 1.84113 1.52547 1.24672 1.44757 1.22921 0.98445 0.98426 0.96377 1.23523 0.94541 1.00344 0.90537 1.64671 1.20655 1.33741 1.02515 1.22115 0.91788 0.98365 0.97286 1.19694 0.83447 0.86486 0.87621 1.90448 1.73805 1.60895 1.21202 1.41855 1.20105 1.38792 1.19080 1.19759 1.01999 1.17989 1.03028 0.87801 1.25272 0.98003 0.98799 0.95910 1.69619 1.26631 1.44282 1.13740 0.85797 0.79404 0.79765 0.79369 1.19190 1.20719 1.20787 1.23256 0.98883 0.91846 0.95519 0.91187 0.90191 0.92992 0.76675 0.85330 0.82139 0.82546 0.82875 0.77658 0.90703 0.90004 0.86265 0.94815 0.93462 0.89147 0.77479 0.91914 0.93561 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.15 37.16 0.30 -1.50 16 2 C 0.16 2.03 0.94 -130.46 -0.12 1.91 16 3 N -0.72 -7.76 5.14 -49.22 -0.25 -8.02 16 4 C 0.55 6.48 6.75 -14.99 -0.10 6.37 16 5 O -0.54 -7.84 12.99 5.12 0.07 -7.77 16 6 C -0.20 -1.96 9.41 -39.25 -0.37 -2.33 16 7 C 0.01 0.07 9.39 -39.23 -0.37 -0.30 16 8 C -0.01 -0.09 6.84 -38.40 -0.26 -0.35 16 9 C -0.16 -1.20 10.90 -38.90 -0.42 -1.63 16 10 C -0.22 -1.36 10.87 -39.90 -0.43 -1.79 16 11 C -0.02 -0.12 12.06 29.63 0.36 0.24 16 12 O -0.17 -1.44 10.18 4.69 0.05 -1.39 16 13 C -0.12 -1.82 5.85 -24.87 -0.15 -1.97 16 14 C 0.04 0.66 5.30 -1.90 -0.01 0.65 16 15 N -0.49 -8.26 5.26 -231.90 -1.22 -9.47 16 16 C 0.04 0.64 5.52 -4.98 -0.03 0.62 16 17 C 0.44 10.36 7.49 -10.98 -0.08 10.27 16 18 O -0.58 -15.33 13.09 5.54 0.07 -15.26 16 19 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 20 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 24 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 C 0.03 0.43 6.15 -2.76 -0.02 0.41 16 29 H 0.07 0.81 8.11 -51.93 -0.42 0.38 16 30 H 0.08 1.05 6.03 -51.93 -0.31 0.74 16 31 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 32 H 0.40 3.45 8.05 -40.82 -0.33 3.12 16 33 H 0.13 1.04 7.72 -52.49 -0.41 0.64 16 34 H 0.16 1.38 7.46 -52.48 -0.39 0.99 16 35 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.21 0.47 8.06 -52.48 -0.42 0.04 16 38 H 0.07 1.16 6.81 -51.93 -0.35 0.81 16 39 H 0.08 1.23 7.84 -51.93 -0.41 0.82 16 40 H 0.12 2.50 5.97 -51.93 -0.31 2.19 16 41 H 0.03 0.60 8.02 -51.93 -0.42 0.19 16 42 H 0.05 0.76 7.81 -51.93 -0.41 0.36 16 43 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 44 H 0.39 9.45 7.90 -40.82 -0.32 9.12 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.05 0.52 6.89 -51.93 -0.36 0.16 16 47 H 0.09 1.05 7.69 -51.93 -0.40 0.65 16 LS Contribution 388.89 15.07 5.86 5.86 Total: -1.00 -33.31 388.89 -8.18 -41.50 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -6.46 Total: 13.80 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -1.94 Total: 2.68 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.81 Total: -55.41 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: 0.19 Total: -24.43 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.31 -8.18 -41.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716833809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.921 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds