Wall clock time and date at job start Wed Apr 1 2020 05:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 110.35300 * 2 1 4 4 C 1.34783 * 119.99843 * 57.85386 * 3 2 1 5 5 O 1.21778 * 119.99921 * 359.97438 * 4 3 2 6 6 C 1.41550 * 119.99776 * 179.97438 * 4 3 2 7 7 C 1.35627 * 119.99998 * 180.02562 * 6 4 3 8 8 C 1.41599 * 120.00199 * 180.02562 * 7 6 4 9 9 C 1.37956 * 126.10394 * 179.71853 * 8 7 6 10 10 C 1.40315 * 106.52539 * 179.84893 * 9 8 7 11 11 C 1.35150 * 107.20661 * 0.40513 * 10 9 8 12 12 O 1.34016 * 109.03648 * 359.74691 * 11 10 9 13 13 C 1.54601 * 110.30588 * 122.13649 * 2 1 3 14 14 C 1.54938 * 102.91726 * 140.87380 * 13 2 1 15 15 N 1.48528 * 103.23097 * 322.58954 * 14 13 2 16 16 C 1.46903 * 111.00089 * 159.72013 * 15 14 13 17 17 C 1.50694 * 109.47066 * 52.60302 * 16 15 14 18 18 O 1.21297 * 120.00199 * 359.97438 * 17 16 15 19 19 N 1.34784 * 119.99988 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99735 * 179.72439 * 19 17 16 21 21 H 1.07998 * 120.00618 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99464 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00058 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99669 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47319 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.46816 * 120.00520 * 24 22 20 27 27 H 1.48501 * 109.47099 * 240.00173 * 24 22 20 28 28 C 1.47897 * 105.82095 * 39.20531 * 15 14 13 29 29 H 1.08997 * 109.46915 * 182.14109 * 1 2 3 30 30 H 1.09000 * 109.47580 * 302.14594 * 1 2 3 31 31 H 1.09007 * 109.46744 * 62.14711 * 1 2 3 32 32 H 0.96995 * 120.00307 * 237.85531 * 3 2 1 33 33 H 1.07997 * 120.00075 * 0.02562 * 6 4 3 34 34 H 1.08007 * 119.99688 * 359.97438 * 7 6 4 35 35 H 1.07997 * 126.73673 * 359.97438 * 9 8 7 36 36 H 1.08001 * 126.39614 * 180.13229 * 10 9 8 37 37 H 1.08005 * 125.48463 * 179.76218 * 11 10 9 38 38 H 1.08993 * 110.73005 * 259.23243 * 13 2 1 39 39 H 1.09000 * 110.72025 * 22.34691 * 13 2 1 40 40 H 1.09006 * 110.66744 * 204.15056 * 14 13 2 41 41 H 1.09004 * 110.66538 * 81.02669 * 14 13 2 42 42 H 1.08998 * 109.46809 * 292.60403 * 16 15 14 43 43 H 1.09002 * 109.47056 * 172.60144 * 16 15 14 44 44 H 0.97000 * 119.99339 * 0.02562 * 19 17 16 45 45 H 0.97000 * 119.99610 * 179.97438 * 23 22 20 46 46 H 1.08998 * 109.91818 * 94.02307 * 28 15 14 47 47 H 1.09000 * 109.92045 * 215.12021 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0395 1.3736 0.0000 4 6 1.6916 2.2214 0.9883 5 8 0.9533 1.8458 1.8810 6 6 2.1844 3.5484 0.9886 7 6 1.8347 4.4014 1.9834 8 6 2.3272 5.7290 1.9834 9 6 2.0499 6.6988 2.9245 10 6 2.7487 7.8497 2.5294 11 6 3.4020 7.5477 1.3855 12 8 3.1469 6.2730 1.0598 13 6 2.0665 -0.7713 1.2278 14 6 3.2854 -1.5347 0.6517 15 7 2.8313 -1.9236 -0.7080 16 6 3.9752 -2.2262 -1.5786 17 6 4.8664 -3.2369 -0.9039 18 8 4.5774 -3.6628 0.1945 19 7 5.9853 -3.6668 -1.5204 20 6 6.7989 -4.5820 -0.9041 21 1 6.5433 -4.9588 0.0752 22 6 7.9521 -5.0255 -1.5400 23 7 8.2629 -4.5674 -2.7317 24 14 9.0605 -6.2731 -0.7006 25 1 8.4925 -6.6270 0.6251 26 1 9.1566 -7.4939 -1.5405 27 1 10.4139 -5.6896 -0.5188 28 6 2.0646 -0.7684 -1.2227 29 1 -0.3633 -1.0269 0.0384 30 1 -0.3634 0.5468 0.8701 31 1 -0.3633 0.4802 -0.9087 32 1 2.6272 1.6729 -0.7112 33 1 2.8387 3.8815 0.1967 34 1 1.1799 4.0682 2.7751 35 1 1.4203 6.5925 3.7955 36 1 2.7588 8.8006 3.0413 37 1 4.0291 8.2247 0.8242 38 1 2.3790 -0.0806 2.0109 39 1 1.3160 -1.4660 1.6049 40 1 3.5046 -2.4182 1.2514 41 1 4.1563 -0.8817 0.5943 42 1 4.5395 -1.3130 -1.7676 43 1 3.6150 -2.6330 -2.5236 44 1 6.2169 -3.3253 -2.3982 45 1 9.0681 -4.8768 -3.1754 46 1 2.7163 -0.1226 -1.8112 47 1 1.2348 -1.1175 -1.8374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716833809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:37 Heat of formation + Delta-G solvation = -44.410472 kcal Electronic energy + Delta-G solvation = -29532.599967 eV Core-core repulsion = 25295.994310 eV Total energy + Delta-G solvation = -4236.605657 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.50759 -41.66422 -40.42749 -39.08108 -36.17807 -35.49537 -35.10939 -34.01625 -33.35509 -32.68601 -30.80805 -29.72958 -28.88340 -26.92561 -25.76280 -24.96182 -22.94899 -22.77747 -21.92589 -21.12725 -20.65102 -20.40193 -19.86096 -18.54098 -18.16557 -17.71791 -17.21800 -17.08117 -16.77881 -16.34208 -16.15316 -15.94679 -15.68532 -15.66628 -15.58419 -14.81080 -14.74523 -14.19589 -14.06122 -13.93307 -13.71916 -13.63706 -13.52541 -13.44644 -13.20482 -13.06795 -12.96264 -12.92324 -12.44203 -12.39621 -12.30303 -12.11658 -11.98274 -11.93107 -11.66080 -11.47925 -10.86038 -10.82588 -10.24432 -10.05949 -9.98615 -9.36055 -8.96090 -8.47787 -5.95948 -0.58909 1.15859 1.35412 1.41037 1.54987 1.70927 2.01545 2.03349 2.18710 2.29261 2.44023 2.88977 3.19048 3.26794 3.49315 3.73092 3.76263 3.94810 3.97227 4.06176 4.14320 4.23287 4.28060 4.29838 4.33422 4.47744 4.51949 4.61457 4.67444 4.78493 4.83493 4.87201 4.90637 4.98384 4.99840 5.10088 5.11254 5.21337 5.25310 5.35538 5.41035 5.52922 5.55455 5.82385 5.93575 6.07576 6.09679 6.57097 6.60097 7.12528 7.24881 7.54831 8.11237 8.69809 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013140 B = 0.001945 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.442253 B =14393.148857 C =15720.199199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.170 3.830 3 N -0.708 5.708 4 C 0.550 3.450 5 O -0.575 6.575 6 C -0.223 4.223 7 C 0.022 3.978 8 C -0.045 4.045 9 C -0.159 4.159 10 C -0.232 4.232 11 C -0.012 4.012 12 O -0.182 6.182 13 C -0.115 4.115 14 C 0.044 3.956 15 N -0.507 5.507 16 C 0.048 3.952 17 C 0.437 3.563 18 O -0.615 6.615 19 N -0.572 5.572 20 C -0.331 4.331 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.275 1.275 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.037 3.963 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.411 0.589 33 H 0.143 0.857 34 H 0.159 0.841 35 H 0.172 0.828 36 H 0.177 0.823 37 H 0.243 0.757 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.025 0.975 42 H 0.072 0.928 43 H 0.115 0.885 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.071 0.929 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.250 26.550 2.266 29.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.083 3.917 3 N -0.360 5.360 4 C 0.342 3.658 5 O -0.458 6.458 6 C -0.243 4.243 7 C 0.002 3.998 8 C -0.093 4.093 9 C -0.178 4.178 10 C -0.250 4.250 11 C -0.081 4.081 12 O -0.078 6.078 13 C -0.154 4.154 14 C -0.083 4.083 15 N -0.232 5.232 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.501 6.501 19 N -0.209 5.209 20 C -0.461 4.461 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.196 1.196 28 C -0.091 4.091 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.248 0.752 33 H 0.160 0.840 34 H 0.177 0.823 35 H 0.189 0.811 36 H 0.195 0.805 37 H 0.259 0.741 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.133 0.867 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.997 25.285 3.202 28.609 hybrid contribution 1.738 0.275 -0.305 1.786 sum -11.259 25.560 2.897 28.079 Atomic orbital electron populations 1.22092 0.92400 1.02993 1.03082 1.21045 0.95125 0.80827 0.94661 1.46097 1.50903 1.11408 1.27634 1.17211 0.80584 0.86435 0.81557 1.90792 1.38377 1.79152 1.37434 1.22027 1.05934 0.93607 1.02771 1.20726 0.94058 0.87665 0.97306 1.19962 1.00884 0.95453 0.93025 1.22795 1.01981 0.92562 1.00488 1.22192 1.02392 1.01364 0.99096 1.25206 1.01695 0.82767 0.98386 1.84103 1.52758 1.25844 1.45085 1.22793 0.97199 0.98129 0.97268 1.23234 0.95421 0.98577 0.91094 1.64631 1.20280 1.36278 1.02001 1.22031 0.91408 0.97533 0.97378 1.20756 0.83167 0.86427 0.87143 1.90453 1.74530 1.62170 1.22950 1.41910 1.20691 1.38976 1.19333 1.19681 1.03674 1.19917 1.02818 0.90393 1.26021 0.98651 1.00125 0.96473 1.69671 1.27160 1.44845 1.14354 0.84887 0.77711 0.77774 0.78065 1.19944 1.19563 1.19596 1.23331 0.99257 0.90815 0.95647 0.91098 0.91798 0.91041 0.75174 0.83968 0.82343 0.81089 0.80542 0.74138 0.91708 0.90618 0.90449 0.95623 0.91028 0.86708 0.76960 0.91299 0.91103 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.15 71.98 0.59 -2.67 16 2 C 0.17 4.03 0.94 4.48 0.00 4.03 16 3 N -0.71 -14.48 5.14 -427.80 -2.20 -16.68 16 4 C 0.55 12.80 6.75 85.06 0.57 13.38 16 5 O -0.57 -16.97 12.99 -4.60 -0.06 -17.03 16 6 C -0.22 -4.18 9.41 22.48 0.21 -3.97 16 7 C 0.02 0.40 9.39 22.49 0.21 0.61 16 8 C -0.04 -0.75 6.84 23.03 0.16 -0.59 16 9 C -0.16 -2.10 10.90 22.71 0.25 -1.85 16 10 C -0.23 -2.31 10.87 22.06 0.24 -2.07 16 11 C -0.01 -0.11 12.06 67.11 0.81 0.69 16 12 O -0.18 -2.90 10.18 -6.12 -0.06 -2.96 16 13 C -0.11 -3.48 5.85 31.80 0.19 -3.29 16 14 C 0.04 1.60 5.30 86.65 0.46 2.06 16 15 N -0.51 -16.55 5.26 -887.59 -4.67 -21.21 16 16 C 0.05 1.63 5.52 85.55 0.47 2.10 16 17 C 0.44 20.83 7.49 87.65 0.66 21.48 16 18 O -0.61 -33.90 13.09 -3.08 -0.04 -33.94 16 19 N -0.57 -29.30 5.29 -306.97 -1.62 -30.92 16 20 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 23 N -0.92 -49.45 13.05 21.66 0.28 -49.17 16 24 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 C 0.04 0.85 6.15 86.45 0.53 1.38 16 29 H 0.07 1.54 8.11 -2.39 -0.02 1.52 16 30 H 0.06 1.66 6.03 -2.39 -0.01 1.65 16 31 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.41 6.25 8.05 -92.71 -0.75 5.51 16 33 H 0.14 2.18 7.72 -2.91 -0.02 2.16 16 34 H 0.16 2.79 7.46 -2.91 -0.02 2.77 16 35 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 37 H 0.24 0.23 8.06 -2.91 -0.02 0.21 16 38 H 0.06 2.09 6.81 -2.39 -0.02 2.07 16 39 H 0.08 2.36 7.84 -2.39 -0.02 2.34 16 40 H 0.08 3.46 5.97 -2.38 -0.01 3.44 16 41 H 0.03 0.94 8.02 -2.39 -0.02 0.92 16 42 H 0.07 2.13 7.81 -2.39 -0.02 2.11 16 43 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 44 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 45 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 46 H 0.07 1.31 6.89 -2.39 -0.02 1.30 16 47 H 0.11 2.15 7.69 -2.39 -0.02 2.14 16 Total: -1.00 -74.58 388.89 -0.17 -74.75 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: -0.46 Total: 38.95 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 6.63 Total: 13.02 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -8.21 Total: -117.99 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -0.16 Total: -53.93 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -74.58 -0.17 -74.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716833809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.341 kcal (2) G-P(sol) polarization free energy of solvation -74.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds