Wall clock time and date at job start Wed Apr 1 2020 05:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 110.35399 * 2 1 4 4 C 1.34774 * 119.99934 * 57.86017 * 3 2 1 5 5 O 1.21778 * 119.99815 * 359.97438 * 4 3 2 6 6 C 1.41548 * 120.00380 * 180.02562 * 4 3 2 7 7 C 1.35624 * 120.00346 * 186.77536 * 6 4 3 8 8 C 1.41606 * 119.99841 * 9.90672 * 7 6 4 9 9 C 1.37952 * 126.10085 * 221.78224 * 8 7 6 10 10 C 1.40312 * 106.53153 * 179.97438 * 9 8 7 11 11 C 1.35157 * 107.20415 * 359.97438 * 10 9 8 12 12 O 1.34023 * 109.03040 * 359.76777 * 11 10 9 13 13 C 1.54595 * 110.31259 * 122.14399 * 2 1 3 14 14 C 1.54937 * 102.92476 * 140.87237 * 13 2 1 15 15 N 1.48523 * 103.22660 * 322.58483 * 14 13 2 16 16 C 1.46904 * 110.99917 * 159.71882 * 15 14 13 17 17 C 1.50699 * 109.47227 * 52.60650 * 16 15 14 18 18 O 1.21291 * 119.99646 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00222 * 180.02562 * 17 16 15 20 20 C 1.37093 * 119.99824 * 179.72420 * 19 17 16 21 21 H 1.08000 * 120.00132 * 359.97438 * 20 19 17 22 22 C 1.38954 * 119.99823 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99862 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99862 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47111 * 90.00041 * 24 22 20 26 26 H 1.48503 * 109.46753 * 209.99950 * 24 22 20 27 27 H 1.48500 * 109.46879 * 329.99469 * 24 22 20 28 28 C 1.47905 * 105.82044 * 39.20699 * 15 14 13 29 29 H 1.09006 * 109.47105 * 182.14325 * 1 2 3 30 30 H 1.09000 * 109.47187 * 302.13970 * 1 2 3 31 31 H 1.08992 * 109.47074 * 62.14373 * 1 2 3 32 32 H 0.97001 * 119.99940 * 237.85746 * 3 2 1 33 33 H 1.07996 * 119.99625 * 6.76899 * 6 4 3 34 34 H 1.07995 * 120.00070 * 189.89851 * 7 6 4 35 35 H 1.07999 * 126.73628 * 359.97438 * 9 8 7 36 36 H 1.07998 * 126.40337 * 179.97438 * 10 9 8 37 37 H 1.08000 * 125.48438 * 180.02562 * 11 10 9 38 38 H 1.09006 * 110.72525 * 259.23168 * 13 2 1 39 39 H 1.09004 * 110.72540 * 22.33381 * 13 2 1 40 40 H 1.09005 * 110.66799 * 204.15007 * 14 13 2 41 41 H 1.08999 * 110.66631 * 81.02466 * 14 13 2 42 42 H 1.08999 * 109.47444 * 292.60357 * 16 15 14 43 43 H 1.09000 * 109.46912 * 172.60815 * 16 15 14 44 44 H 0.97001 * 119.99620 * 359.97438 * 19 17 16 45 45 H 0.96997 * 119.99596 * 179.97438 * 23 22 20 46 46 H 1.08998 * 109.91586 * 94.01936 * 28 15 14 47 47 H 1.08999 * 109.92051 * 215.11589 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0395 1.3735 0.0000 4 6 1.6917 2.2213 0.9883 5 8 0.9536 1.8456 1.8811 6 6 2.1836 3.5486 0.9881 7 6 1.9477 4.3594 2.0494 8 6 1.3974 3.8253 3.2399 9 6 0.4170 4.4090 4.0153 10 6 0.1829 3.5348 5.0876 11 6 1.0090 2.4769 4.9286 12 8 1.7335 2.6518 3.8147 13 6 2.0666 -0.7714 1.2276 14 6 3.2855 -1.5348 0.6514 15 7 2.8313 -1.9236 -0.7082 16 6 3.9752 -2.2262 -1.5789 17 6 4.8665 -3.2369 -0.9043 18 8 4.5775 -3.6629 0.1940 19 7 5.9852 -3.6667 -1.5209 20 6 6.7989 -4.5820 -0.9047 21 1 6.5437 -4.9582 0.0749 22 6 7.9520 -5.0255 -1.5406 23 7 8.2622 -4.5681 -2.7329 24 14 9.0605 -6.2731 -0.7014 25 1 8.6282 -7.6455 -1.0688 26 1 10.4637 -6.0622 -1.1394 27 1 8.9708 -6.1033 0.7712 28 6 2.0645 -0.7683 -1.2228 29 1 -0.3633 -1.0270 0.0384 30 1 -0.3633 0.5467 0.8702 31 1 -0.3633 0.4801 -0.9085 32 1 2.6272 1.6728 -0.7113 33 1 2.7467 3.9155 0.1429 34 1 2.1798 5.4122 1.9867 35 1 -0.0740 5.3534 3.8329 36 1 -0.5251 3.6800 5.8901 37 1 1.0718 1.6256 5.5902 38 1 2.3792 -0.0806 2.0108 39 1 1.3161 -1.4660 1.6049 40 1 3.5047 -2.4183 1.2511 41 1 4.1564 -0.8818 0.5941 42 1 4.5395 -1.3130 -1.7680 43 1 3.6149 -2.6328 -2.5238 44 1 6.2164 -3.3258 -2.3991 45 1 9.0674 -4.8774 -3.1766 46 1 2.7162 -0.1226 -1.8113 47 1 1.2347 -1.1175 -1.8374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716833810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:41 Heat of formation + Delta-G solvation = -8.927150 kcal Electronic energy + Delta-G solvation = -30572.944561 eV Core-core repulsion = 26337.877576 eV Total energy + Delta-G solvation = -4235.066985 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.50812 -40.55413 -38.93574 -37.60251 -34.77498 -34.14046 -33.77453 -32.93986 -31.68818 -31.20745 -29.56308 -28.73408 -27.48113 -25.43092 -24.50587 -23.65631 -21.79675 -21.68189 -21.11894 -19.79418 -19.51145 -19.16733 -18.06007 -17.88225 -16.59460 -16.40868 -15.96328 -15.83695 -15.34310 -15.03706 -14.74037 -14.54391 -14.38326 -14.28932 -13.93507 -13.57321 -13.34386 -13.31551 -12.96179 -12.94172 -12.66635 -12.55695 -12.42900 -12.27604 -12.00116 -11.74529 -11.55016 -11.22141 -11.11537 -10.91206 -10.74762 -10.74329 -10.39812 -10.27034 -10.23724 -9.94189 -9.76228 -9.50806 -9.04057 -8.38004 -8.12778 -8.02878 -7.90783 -6.43749 -3.84461 0.36589 1.97378 2.55218 3.05181 3.15866 3.16755 3.25526 3.31259 3.32587 3.87527 4.09136 4.32318 4.45104 4.53815 4.72686 4.83513 4.87759 4.93554 4.99945 5.07933 5.11352 5.23334 5.41987 5.47849 5.54619 5.59470 5.62652 5.70958 5.75787 5.79533 5.81377 5.88143 5.92378 6.01886 6.07988 6.18317 6.23773 6.31075 6.36436 6.40127 6.58439 6.73751 7.08945 7.22129 7.27842 7.46760 7.53711 8.04137 8.19626 8.59625 9.16131 9.51588 10.03440 10.73945 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017455 B = 0.002166 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.708372 B =12922.277815 C =13478.200715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.166 3.834 3 N -0.717 5.717 4 C 0.540 3.460 5 O -0.519 6.519 6 C -0.205 4.205 7 C 0.004 3.996 8 C 0.009 3.991 9 C -0.183 4.183 10 C -0.227 4.227 11 C -0.014 4.014 12 O -0.134 6.134 13 C -0.121 4.121 14 C 0.039 3.961 15 N -0.492 5.492 16 C 0.036 3.964 17 C 0.442 3.558 18 O -0.579 6.579 19 N -0.562 5.562 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.034 3.966 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.397 0.603 33 H 0.136 0.864 34 H 0.154 0.846 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.198 0.802 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.118 0.882 41 H 0.033 0.967 42 H 0.047 0.953 43 H 0.090 0.910 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.046 0.954 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.015 20.398 5.573 25.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.080 3.920 3 N -0.369 5.369 4 C 0.329 3.671 5 O -0.397 6.397 6 C -0.226 4.226 7 C -0.016 4.016 8 C -0.042 4.042 9 C -0.202 4.202 10 C -0.246 4.246 11 C -0.084 4.084 12 O -0.027 6.027 13 C -0.160 4.160 14 C -0.088 4.088 15 N -0.216 5.216 16 C -0.095 4.095 17 C 0.228 3.772 18 O -0.464 6.464 19 N -0.198 5.198 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.095 4.095 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.231 0.769 33 H 0.154 0.846 34 H 0.171 0.829 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.215 0.785 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.136 0.864 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.649 19.082 6.685 24.968 hybrid contribution 1.483 0.597 -0.840 1.806 sum -13.166 19.679 5.844 24.388 Atomic orbital electron populations 1.22149 0.93403 1.02797 1.02758 1.21132 0.94423 0.80439 0.96025 1.46209 1.50931 1.12130 1.27640 1.17060 0.81985 0.85872 0.82142 1.90837 1.36157 1.77454 1.35294 1.22332 1.03998 0.95307 1.00948 1.20606 0.92883 0.99282 0.88837 1.19537 1.01727 0.85863 0.97053 1.22104 1.00519 1.01801 0.95782 1.21608 1.04461 0.96528 1.01984 1.24163 0.94470 1.00627 0.89143 1.84252 1.52628 1.33828 1.32014 1.22899 0.98304 0.98361 0.96473 1.23505 0.94564 1.00273 0.90494 1.64671 1.20637 1.33773 1.02531 1.22113 0.91797 0.98349 0.97278 1.19691 0.83440 0.86496 0.87623 1.90446 1.73801 1.60910 1.21215 1.41847 1.20111 1.38798 1.19060 1.19701 1.02030 1.18070 1.03007 0.87881 1.25269 0.97989 0.98777 0.95921 1.69611 1.26729 1.44239 1.13708 0.85854 0.78694 0.80228 0.79501 1.20355 1.20939 1.19417 1.23253 0.98821 0.91843 0.95576 0.91363 0.90253 0.93116 0.76893 0.84610 0.82903 0.83606 0.83715 0.78527 0.90602 0.90256 0.86368 0.94872 0.93484 0.89179 0.77475 0.91862 0.93615 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.15 37.16 0.30 -1.53 16 2 C 0.17 2.08 0.94 -130.47 -0.12 1.95 16 3 N -0.72 -7.73 5.14 -49.22 -0.25 -7.98 16 4 C 0.54 6.35 6.53 -15.00 -0.10 6.26 16 5 O -0.52 -7.56 9.47 -19.42 -0.18 -7.75 16 6 C -0.21 -1.78 9.85 -39.26 -0.39 -2.17 16 7 C 0.00 0.03 9.94 -39.23 -0.39 -0.36 16 8 C 0.01 0.10 5.22 -38.40 -0.20 -0.11 16 9 C -0.18 -1.83 10.90 -38.91 -0.42 -2.25 16 10 C -0.23 -2.24 10.87 -39.90 -0.43 -2.68 16 11 C -0.01 -0.15 12.06 29.64 0.36 0.21 16 12 O -0.13 -1.76 8.04 -19.84 -0.16 -1.92 16 13 C -0.12 -1.83 5.85 -24.87 -0.15 -1.97 16 14 C 0.04 0.68 5.30 -1.90 -0.01 0.67 16 15 N -0.49 -8.31 5.26 -231.89 -1.22 -9.53 16 16 C 0.04 0.65 5.52 -4.97 -0.03 0.62 16 17 C 0.44 10.38 7.49 -10.99 -0.08 10.30 16 18 O -0.58 -15.38 13.09 5.55 0.07 -15.30 16 19 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 20 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 24 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 C 0.03 0.43 6.15 -2.75 -0.02 0.42 16 29 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 30 H 0.08 1.09 6.03 -51.93 -0.31 0.77 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.40 3.34 8.05 -40.82 -0.33 3.01 16 33 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.08 1.21 6.81 -51.93 -0.35 0.86 16 39 H 0.08 1.22 7.84 -51.93 -0.41 0.81 16 40 H 0.12 2.50 5.97 -51.93 -0.31 2.19 16 41 H 0.03 0.60 8.02 -51.93 -0.42 0.18 16 42 H 0.05 0.76 7.81 -51.93 -0.41 0.35 16 43 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 44 H 0.39 9.45 7.90 -40.82 -0.32 9.12 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.05 0.51 6.89 -51.93 -0.36 0.16 16 47 H 0.09 1.05 7.69 -51.93 -0.40 0.65 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -33.89 383.33 -8.75 -42.63 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -6.51 Total: 14.56 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -1.92 Total: 1.43 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.81 Total: -55.43 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.27 Total: -24.97 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.89 -8.75 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716833810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.706 kcal (2) G-P(sol) polarization free energy of solvation -33.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds