Wall clock time and date at job start Wed Apr 1 2020 05:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 110.35399 * 2 1 4 4 C 1.34774 * 119.99934 * 57.86017 * 3 2 1 5 5 O 1.21778 * 119.99815 * 359.97438 * 4 3 2 6 6 C 1.41548 * 120.00380 * 180.02562 * 4 3 2 7 7 C 1.35624 * 120.00346 * 186.77536 * 6 4 3 8 8 C 1.41606 * 119.99841 * 9.90672 * 7 6 4 9 9 C 1.37952 * 126.10085 * 221.78224 * 8 7 6 10 10 C 1.40312 * 106.53153 * 179.97438 * 9 8 7 11 11 C 1.35157 * 107.20415 * 359.97438 * 10 9 8 12 12 O 1.34023 * 109.03040 * 359.76777 * 11 10 9 13 13 C 1.54595 * 110.31259 * 122.14399 * 2 1 3 14 14 C 1.54937 * 102.92476 * 140.87237 * 13 2 1 15 15 N 1.48523 * 103.22660 * 322.58483 * 14 13 2 16 16 C 1.46904 * 110.99917 * 159.71882 * 15 14 13 17 17 C 1.50699 * 109.47227 * 52.60650 * 16 15 14 18 18 O 1.21291 * 119.99646 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00222 * 180.02562 * 17 16 15 20 20 C 1.37093 * 119.99824 * 179.72420 * 19 17 16 21 21 H 1.08000 * 120.00132 * 359.97438 * 20 19 17 22 22 C 1.38954 * 119.99823 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99862 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99862 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47111 * 90.00041 * 24 22 20 26 26 H 1.48503 * 109.46753 * 209.99950 * 24 22 20 27 27 H 1.48500 * 109.46879 * 329.99469 * 24 22 20 28 28 C 1.47905 * 105.82044 * 39.20699 * 15 14 13 29 29 H 1.09006 * 109.47105 * 182.14325 * 1 2 3 30 30 H 1.09000 * 109.47187 * 302.13970 * 1 2 3 31 31 H 1.08992 * 109.47074 * 62.14373 * 1 2 3 32 32 H 0.97001 * 119.99940 * 237.85746 * 3 2 1 33 33 H 1.07996 * 119.99625 * 6.76899 * 6 4 3 34 34 H 1.07995 * 120.00070 * 189.89851 * 7 6 4 35 35 H 1.07999 * 126.73628 * 359.97438 * 9 8 7 36 36 H 1.07998 * 126.40337 * 179.97438 * 10 9 8 37 37 H 1.08000 * 125.48438 * 180.02562 * 11 10 9 38 38 H 1.09006 * 110.72525 * 259.23168 * 13 2 1 39 39 H 1.09004 * 110.72540 * 22.33381 * 13 2 1 40 40 H 1.09005 * 110.66799 * 204.15007 * 14 13 2 41 41 H 1.08999 * 110.66631 * 81.02466 * 14 13 2 42 42 H 1.08999 * 109.47444 * 292.60357 * 16 15 14 43 43 H 1.09000 * 109.46912 * 172.60815 * 16 15 14 44 44 H 0.97001 * 119.99620 * 359.97438 * 19 17 16 45 45 H 0.96997 * 119.99596 * 179.97438 * 23 22 20 46 46 H 1.08998 * 109.91586 * 94.01936 * 28 15 14 47 47 H 1.08999 * 109.92051 * 215.11589 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0395 1.3735 0.0000 4 6 1.6917 2.2213 0.9883 5 8 0.9536 1.8456 1.8811 6 6 2.1836 3.5486 0.9881 7 6 1.9477 4.3594 2.0494 8 6 1.3974 3.8253 3.2399 9 6 0.4170 4.4090 4.0153 10 6 0.1829 3.5348 5.0876 11 6 1.0090 2.4769 4.9286 12 8 1.7335 2.6518 3.8147 13 6 2.0666 -0.7714 1.2276 14 6 3.2855 -1.5348 0.6514 15 7 2.8313 -1.9236 -0.7082 16 6 3.9752 -2.2262 -1.5789 17 6 4.8665 -3.2369 -0.9043 18 8 4.5775 -3.6629 0.1940 19 7 5.9852 -3.6667 -1.5209 20 6 6.7989 -4.5820 -0.9047 21 1 6.5437 -4.9582 0.0749 22 6 7.9520 -5.0255 -1.5406 23 7 8.2622 -4.5681 -2.7329 24 14 9.0605 -6.2731 -0.7014 25 1 8.6282 -7.6455 -1.0688 26 1 10.4637 -6.0622 -1.1394 27 1 8.9708 -6.1033 0.7712 28 6 2.0645 -0.7683 -1.2228 29 1 -0.3633 -1.0270 0.0384 30 1 -0.3633 0.5467 0.8702 31 1 -0.3633 0.4801 -0.9085 32 1 2.6272 1.6728 -0.7113 33 1 2.7467 3.9155 0.1429 34 1 2.1798 5.4122 1.9867 35 1 -0.0740 5.3534 3.8329 36 1 -0.5251 3.6800 5.8901 37 1 1.0718 1.6256 5.5902 38 1 2.3792 -0.0806 2.0108 39 1 1.3161 -1.4660 1.6049 40 1 3.5047 -2.4183 1.2511 41 1 4.1564 -0.8818 0.5941 42 1 4.5395 -1.3130 -1.7680 43 1 3.6149 -2.6328 -2.5238 44 1 6.2164 -3.3258 -2.3991 45 1 9.0674 -4.8774 -3.1766 46 1 2.7162 -0.1226 -1.8113 47 1 1.2347 -1.1175 -1.8374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716833810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:40 Heat of formation + Delta-G solvation = -33.582970 kcal Electronic energy + Delta-G solvation = -30574.013718 eV Core-core repulsion = 26337.877576 eV Total energy + Delta-G solvation = -4236.136141 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.28557 -41.58953 -40.39688 -39.06404 -36.18122 -35.49157 -34.89096 -33.71675 -33.35693 -32.65080 -30.78906 -29.50378 -28.89042 -26.92527 -25.71338 -24.86194 -22.87675 -22.52151 -22.13616 -21.12904 -20.67875 -20.31556 -19.86164 -18.85537 -17.88484 -17.38998 -17.22740 -16.79900 -16.73213 -16.33807 -16.12562 -15.87268 -15.68888 -15.58627 -15.07425 -14.82096 -14.70510 -14.21381 -14.14325 -13.95625 -13.69405 -13.61336 -13.44453 -13.38248 -13.24582 -13.06793 -12.96795 -12.92321 -12.45076 -12.40321 -12.29095 -12.12514 -11.97062 -11.91536 -11.47807 -10.98736 -10.75279 -10.63283 -10.22535 -10.03150 -9.93132 -9.36591 -8.86914 -8.47869 -5.96109 -0.31800 1.20570 1.36649 1.40713 1.53060 1.80147 2.03086 2.23741 2.30495 2.34048 2.57502 2.89872 3.18954 3.26954 3.49931 3.76614 3.88387 3.94725 4.06494 4.18410 4.22861 4.25262 4.28391 4.33133 4.47255 4.50027 4.53365 4.61260 4.76811 4.82651 4.87007 4.89320 4.90294 4.97566 5.08500 5.10408 5.17884 5.24202 5.33039 5.39745 5.40493 5.59342 5.70830 5.82178 5.93717 6.09530 6.32523 6.59778 6.66188 7.12172 7.37113 7.54466 8.10962 8.69492 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017455 B = 0.002166 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.708372 B =12922.277815 C =13478.200715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.174 3.826 3 N -0.710 5.710 4 C 0.530 3.470 5 O -0.553 6.553 6 C -0.213 4.213 7 C 0.006 3.994 8 C -0.014 4.014 9 C -0.191 4.191 10 C -0.231 4.231 11 C -0.039 4.039 12 O -0.163 6.163 13 C -0.111 4.111 14 C 0.047 3.953 15 N -0.508 5.508 16 C 0.048 3.952 17 C 0.437 3.563 18 O -0.616 6.616 19 N -0.571 5.571 20 C -0.332 4.332 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.275 1.275 28 C 0.038 3.962 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.411 0.589 33 H 0.173 0.827 34 H 0.194 0.806 35 H 0.170 0.830 36 H 0.165 0.835 37 H 0.213 0.787 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.025 0.975 42 H 0.073 0.927 43 H 0.115 0.885 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.072 0.928 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.257 22.413 3.916 26.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.087 3.913 3 N -0.363 5.363 4 C 0.321 3.679 5 O -0.433 6.433 6 C -0.233 4.233 7 C -0.014 4.014 8 C -0.063 4.063 9 C -0.210 4.210 10 C -0.250 4.250 11 C -0.109 4.109 12 O -0.058 6.058 13 C -0.150 4.150 14 C -0.081 4.081 15 N -0.233 5.233 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.502 6.502 19 N -0.209 5.209 20 C -0.461 4.461 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.090 4.090 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.248 0.752 33 H 0.190 0.810 34 H 0.211 0.789 35 H 0.188 0.812 36 H 0.183 0.817 37 H 0.230 0.770 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.043 0.957 42 H 0.091 0.909 43 H 0.133 0.867 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.890 21.128 4.987 26.324 hybrid contribution 1.490 -0.011 -0.255 1.511 sum -13.400 21.117 4.732 25.454 Atomic orbital electron populations 1.22054 0.92775 1.02610 1.02845 1.20938 0.94772 0.81198 0.94355 1.46093 1.51025 1.11149 1.28062 1.17648 0.81580 0.87057 0.81586 1.90835 1.37729 1.78292 1.36472 1.22519 1.04644 0.93577 1.02602 1.21162 0.91578 1.01105 0.87514 1.20230 1.02410 0.85476 0.98216 1.22496 1.00304 1.02677 0.95504 1.21963 1.04359 0.96144 1.02517 1.24663 0.95025 1.01848 0.89314 1.84224 1.53587 1.35045 1.32916 1.22734 0.96992 0.97946 0.97360 1.23195 0.95375 0.98429 0.91064 1.64624 1.20318 1.36364 1.02002 1.22029 0.91387 0.97555 0.97339 1.20759 0.83174 0.86457 0.87144 1.90452 1.74540 1.62206 1.22994 1.41903 1.20683 1.38968 1.19315 1.19630 1.03705 1.20002 1.02800 0.90457 1.26015 0.98630 1.00094 0.96483 1.69663 1.27233 1.44772 1.14309 0.84953 0.77361 0.78048 0.78132 1.19657 1.19439 1.19940 1.23323 0.99176 0.90819 0.95699 0.91545 0.92133 0.91130 0.75213 0.80955 0.78873 0.81238 0.81717 0.77011 0.91917 0.91227 0.90677 0.95682 0.90944 0.86729 0.76934 0.91276 0.90970 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.15 71.98 0.59 -2.68 16 2 C 0.17 4.11 0.94 4.48 0.00 4.12 16 3 N -0.71 -13.86 5.14 -427.83 -2.20 -16.06 16 4 C 0.53 11.82 6.53 85.06 0.56 12.38 16 5 O -0.55 -16.16 9.47 18.86 0.18 -15.98 16 6 C -0.21 -3.18 9.85 22.48 0.22 -2.96 16 7 C 0.01 0.08 9.94 22.50 0.22 0.31 16 8 C -0.01 -0.29 5.22 23.03 0.12 -0.17 16 9 C -0.19 -3.62 10.90 22.71 0.25 -3.38 16 10 C -0.23 -4.49 10.87 22.06 0.24 -4.25 16 11 C -0.04 -0.87 12.06 67.11 0.81 -0.06 16 12 O -0.16 -4.40 8.04 17.35 0.14 -4.26 16 13 C -0.11 -3.43 5.85 31.80 0.19 -3.24 16 14 C 0.05 1.70 5.30 86.65 0.46 2.16 16 15 N -0.51 -16.64 5.26 -887.58 -4.67 -21.31 16 16 C 0.05 1.64 5.52 85.56 0.47 2.11 16 17 C 0.44 20.81 7.49 87.66 0.66 21.47 16 18 O -0.62 -34.03 13.09 -3.06 -0.04 -34.07 16 19 N -0.57 -29.24 5.29 -306.99 -1.62 -30.86 16 20 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 21 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 22 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 23 N -0.92 -49.31 13.05 21.66 0.28 -49.03 16 24 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 28 C 0.04 0.86 6.15 86.45 0.53 1.39 16 29 H 0.07 1.51 8.11 -2.38 -0.02 1.49 16 30 H 0.06 1.64 6.03 -2.39 -0.01 1.62 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.41 5.59 8.05 -92.71 -0.75 4.85 16 33 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 34 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 35 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 37 H 0.21 3.53 8.06 -2.91 -0.02 3.51 16 38 H 0.06 2.09 6.81 -2.38 -0.02 2.08 16 39 H 0.07 2.24 7.84 -2.38 -0.02 2.22 16 40 H 0.07 3.39 5.97 -2.38 -0.01 3.38 16 41 H 0.02 0.93 8.02 -2.39 -0.02 0.91 16 42 H 0.07 2.13 7.81 -2.39 -0.02 2.12 16 43 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 44 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 45 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 46 H 0.07 1.31 6.89 -2.39 -0.02 1.29 16 47 H 0.11 2.13 7.69 -2.39 -0.02 2.11 16 Total: -1.00 -77.03 383.33 0.23 -76.79 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: -0.46 Total: 40.73 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 6.60 Total: 8.94 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -8.21 Total: -117.27 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: 0.28 Total: -54.32 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -77.03 0.23 -76.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716833810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.211 kcal (2) G-P(sol) polarization free energy of solvation -77.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds