Wall clock time and date at job start Wed Apr 1 2020 05:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34179 * 125.43410 * 2 1 4 4 C 1.47021 * 105.95470 * 180.13696 * 3 2 1 5 5 C 1.47380 * 127.19475 * 179.82881 * 4 3 2 6 6 O 1.21615 * 119.99946 * 172.71589 * 5 4 3 7 7 N 1.34779 * 120.00057 * 352.71767 * 5 4 3 8 8 C 1.47201 * 126.70117 * 354.05860 * 7 5 4 9 9 C 1.56125 * 106.57730 * 211.89482 * 8 7 5 10 10 H 1.08997 * 113.85810 * 102.86656 * 9 8 7 11 11 C 1.54306 * 109.30594 * 229.01330 * 9 8 7 12 12 N 1.48518 * 104.79118 * 134.89583 * 11 9 8 13 13 C 1.46902 * 110.99973 * 200.71831 * 12 11 9 14 14 C 1.50707 * 109.47112 * 170.00296 * 13 12 11 15 15 O 1.21296 * 119.99948 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99756 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99712 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00368 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99937 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99962 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00090 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47082 * 90.00209 * 21 19 17 23 23 H 1.48493 * 109.47268 * 210.00056 * 21 19 17 24 24 H 1.48497 * 109.47212 * 330.00492 * 21 19 17 25 25 C 1.48531 * 104.21258 * 320.26762 * 12 11 9 26 26 C 1.54305 * 104.68931 * 39.67806 * 25 12 11 27 27 H 1.08997 * 112.04986 * 97.98445 * 26 25 12 28 28 C 1.47203 * 126.70222 * 174.05347 * 7 5 4 29 29 C 1.36415 * 105.61503 * 359.57395 * 4 3 2 30 30 O 1.33654 * 108.39719 * 0.25631 * 29 4 3 31 31 H 1.09000 * 109.46730 * 180.31499 * 1 2 3 32 32 H 1.08992 * 109.47466 * 300.31683 * 1 2 3 33 33 H 1.08997 * 109.47108 * 60.32098 * 1 2 3 34 34 H 1.08002 * 127.02511 * 359.97438 * 3 2 1 35 35 H 1.09003 * 110.06913 * 330.55847 * 8 7 5 36 36 H 1.09000 * 110.07133 * 92.08290 * 8 7 5 37 37 H 1.09001 * 110.38611 * 16.03923 * 11 9 8 38 38 H 1.08995 * 110.39653 * 253.75900 * 11 9 8 39 39 H 1.09000 * 109.46905 * 289.99895 * 13 12 11 40 40 H 1.08992 * 109.47265 * 49.99925 * 13 12 11 41 41 H 0.96994 * 120.00366 * 359.97438 * 16 14 13 42 42 H 0.97002 * 119.99934 * 180.02562 * 20 19 17 43 43 H 1.09000 * 110.39564 * 158.48239 * 25 12 11 44 44 H 1.09002 * 110.39189 * 280.76003 * 25 12 11 45 45 H 1.09000 * 110.06809 * 29.44775 * 28 7 5 46 46 H 1.08991 * 110.07173 * 267.91273 * 28 7 5 47 47 H 1.08001 * 125.80377 * 180.25670 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0933 0.0000 4 6 3.6710 0.6030 -0.0034 5 6 4.9024 1.4127 -0.0082 6 8 5.9849 0.8740 0.1230 7 7 4.8290 2.7501 -0.1578 8 6 3.6197 3.5379 -0.4475 9 6 4.0794 4.7625 -1.2999 10 1 3.8598 4.6669 -2.3632 11 6 3.4852 6.0538 -0.6995 12 7 4.6135 7.0195 -0.6853 13 6 4.3681 8.1016 0.2774 14 6 5.6233 8.9186 0.4455 15 8 6.6240 8.6276 -0.1752 16 7 5.6342 9.9718 1.2863 17 6 6.7760 10.7153 1.4389 18 1 7.6667 10.4568 0.8856 19 6 6.7871 11.8015 2.3053 20 7 5.7034 12.1158 2.9789 21 14 8.3429 12.8142 2.5137 22 1 8.3496 13.9208 1.5234 23 1 8.3861 13.3784 3.8866 24 1 9.5297 11.9485 2.2966 25 6 5.7868 6.2034 -0.2811 26 6 5.6046 4.8622 -1.0221 27 1 6.1928 4.8179 -1.9387 28 6 5.9424 3.7084 -0.0634 29 6 3.5791 -0.7580 0.0047 30 8 2.2853 -1.0934 0.0066 31 1 -0.3633 -1.0277 0.0056 32 1 -0.3634 0.5187 0.8870 33 1 -0.3633 0.5088 -0.8928 34 1 1.9594 2.1231 -0.0004 35 1 2.9123 2.9396 -1.0219 36 1 3.1592 3.8720 0.4822 37 1 3.1281 5.8719 0.3142 38 1 2.6746 6.4260 -1.3259 39 1 3.5655 8.7405 -0.0910 40 1 4.0809 7.6749 1.2383 41 1 4.8342 10.2043 1.7830 42 1 5.7111 12.8743 3.5835 43 1 6.7121 6.6874 -0.5937 44 1 5.7869 6.0465 0.7976 45 1 6.8739 3.2306 -0.3667 46 1 6.0282 4.0827 0.9567 47 1 4.4104 -1.4474 0.0088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717009264.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:27 Heat of formation + Delta-G solvation = -28.261775 kcal Electronic energy + Delta-G solvation = -30109.807148 eV Core-core repulsion = 25873.901751 eV Total energy + Delta-G solvation = -4235.905397 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.95534 -40.57849 -38.98993 -37.91437 -35.70557 -33.94779 -33.64179 -32.44024 -31.61034 -31.15396 -30.65420 -27.50639 -27.07851 -26.17539 -25.19942 -24.02461 -22.45425 -21.65948 -21.22384 -19.72791 -19.29825 -18.94306 -17.88650 -17.66718 -17.03056 -16.68861 -16.12334 -15.85716 -15.76504 -15.44904 -14.81662 -14.76449 -14.45378 -14.37066 -13.88076 -13.74486 -13.60389 -13.51041 -13.34901 -13.21454 -12.84693 -12.80629 -12.36930 -12.27133 -12.11101 -11.94824 -11.57244 -11.48021 -11.34711 -11.09744 -10.96543 -10.65367 -10.64106 -10.39984 -10.24661 -10.21983 -10.10721 -9.51575 -9.06093 -8.81421 -8.46406 -8.06737 -7.95331 -6.44911 -3.85791 1.05069 1.61865 2.42193 2.76617 3.08140 3.15986 3.25108 3.30755 3.85393 3.97170 4.04240 4.17059 4.20069 4.40679 4.53606 4.56685 4.72760 4.78555 4.94330 4.95983 4.98178 5.04881 5.07410 5.16952 5.22244 5.24365 5.25434 5.37493 5.44407 5.56692 5.63575 5.67380 5.71305 5.80346 5.82593 5.89520 5.91497 6.03502 6.10501 6.22226 6.25445 6.60023 6.63988 7.10696 7.20840 7.31505 7.52534 7.94050 8.02609 8.57746 9.14660 9.50112 10.01445 10.72676 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021676 B = 0.001961 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.450987 B =14274.852597 C =14751.621077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.011 4.011 3 C -0.198 4.198 4 C -0.234 4.234 5 C 0.607 3.393 6 O -0.545 6.545 7 N -0.609 5.609 8 C 0.097 3.903 9 C -0.099 4.099 10 H 0.100 0.900 11 C 0.035 3.965 12 N -0.487 5.487 13 C 0.034 3.966 14 C 0.441 3.559 15 O -0.581 6.581 16 N -0.561 5.561 17 C -0.299 4.299 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 C 0.042 3.958 26 C -0.104 4.104 27 H 0.096 0.904 28 C 0.111 3.889 29 C 0.049 3.951 30 O -0.174 6.174 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.165 0.835 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.119 0.881 44 H 0.040 0.960 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.730 -22.331 -5.475 26.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.059 4.059 3 C -0.217 4.217 4 C -0.239 4.239 5 C 0.397 3.603 6 O -0.424 6.424 7 N -0.341 5.341 8 C -0.026 4.026 9 C -0.118 4.118 10 H 0.119 0.881 11 C -0.093 4.093 12 N -0.211 5.211 13 C -0.097 4.097 14 C 0.227 3.773 15 O -0.465 6.465 16 N -0.197 5.197 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.085 4.085 26 C -0.124 4.124 27 H 0.114 0.886 28 C -0.012 4.012 29 C -0.022 4.022 30 O -0.070 6.070 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.183 0.817 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.137 0.863 44 H 0.058 0.942 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -12.552 -22.745 -6.156 26.698 hybrid contribution 0.122 0.726 1.390 1.573 sum -12.431 -22.019 -4.766 25.731 Atomic orbital electron populations 1.20366 0.84607 1.04292 1.03970 1.22388 0.94225 0.83764 1.05558 1.23026 0.90717 1.00009 1.07942 1.21341 0.93687 0.94024 1.14818 1.16841 0.87359 0.79964 0.76113 1.90807 1.29267 1.71005 1.51309 1.48244 1.10640 1.05050 1.70196 1.23009 0.87977 0.92469 0.99177 1.23174 0.95339 0.93323 1.00001 0.88138 1.23280 0.95117 0.91472 0.99456 1.65245 1.02346 1.07859 1.45618 1.22089 0.98594 0.94591 0.94454 1.19696 0.89444 0.84057 0.84140 1.90452 1.35423 1.70863 1.49798 1.41852 1.14104 1.25626 1.38154 1.19701 0.91725 1.07952 1.23492 0.87854 1.25273 0.98610 0.97784 0.96277 1.69611 1.27877 1.28950 1.27785 0.85851 0.81327 0.79663 0.77421 1.20362 1.20936 1.19398 1.23454 0.97695 0.90607 0.96783 1.22858 0.95850 0.94595 0.99124 0.88555 1.22253 0.90633 0.88576 0.99704 1.24352 0.83695 0.95386 0.98746 1.83776 1.16570 1.35568 1.71078 0.90382 0.89369 0.89355 0.81731 0.89568 0.90892 0.93681 0.89900 0.89062 0.93319 0.77455 0.91838 0.86347 0.94209 0.89840 0.90938 0.76537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.40 36.01 0.37 0.08 16 2 C -0.01 -0.08 7.28 -35.74 -0.26 -0.34 16 3 C -0.20 -1.66 9.17 -37.45 -0.34 -2.00 16 4 C -0.23 -2.52 6.20 -103.28 -0.64 -3.16 16 5 C 0.61 8.10 7.86 -12.54 -0.10 8.00 16 6 O -0.54 -8.97 17.14 5.26 0.09 -8.88 16 7 N -0.61 -7.31 3.32 -171.40 -0.57 -7.88 16 8 C 0.10 0.89 5.00 -1.98 -0.01 0.88 16 9 C -0.10 -1.01 4.24 -87.01 -0.37 -1.38 16 10 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 11 C 0.04 0.40 6.05 -2.24 -0.01 0.38 16 12 N -0.49 -7.68 5.33 -231.57 -1.24 -8.92 16 13 C 0.03 0.59 5.55 -4.97 -0.03 0.56 16 14 C 0.44 10.10 7.50 -10.98 -0.08 10.02 16 15 O -0.58 -15.03 13.24 5.54 0.07 -14.96 16 16 N -0.56 -13.94 5.29 -10.96 -0.06 -14.00 16 17 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 18 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.24 13.05 55.50 0.72 -23.51 16 21 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 C 0.04 0.67 4.85 -2.24 -0.01 0.66 16 26 C -0.10 -1.30 4.03 -88.29 -0.36 -1.66 16 27 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 28 C 0.11 1.40 6.58 -3.26 -0.02 1.38 16 29 C 0.05 0.44 11.91 30.08 0.36 0.80 16 30 O -0.17 -1.52 10.52 7.65 0.08 -1.44 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.17 1.08 5.40 -52.49 -0.28 0.80 16 35 H 0.09 0.65 5.37 -51.93 -0.28 0.37 16 36 H 0.07 0.62 7.10 -51.93 -0.37 0.25 16 37 H 0.05 0.47 6.87 -51.93 -0.36 0.12 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.05 0.76 7.88 -51.93 -0.41 0.35 16 41 H 0.39 9.33 7.90 -40.82 -0.32 9.00 16 42 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.12 2.30 6.04 -51.93 -0.31 1.98 16 44 H 0.04 0.65 7.02 -51.93 -0.36 0.28 16 45 H 0.08 1.11 7.87 -51.93 -0.41 0.70 16 46 H 0.07 0.94 7.11 -51.93 -0.37 0.57 16 47 H 0.22 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 379.61 15.07 5.72 5.72 Total: -1.00 -33.78 379.61 -8.30 -42.09 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.37 Total: 9.55 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -1.74 Total: 6.37 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -1.14 Total: -54.31 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: 0.24 Total: -25.28 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.78 -8.30 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717009264.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.825 kcal (2) G-P(sol) polarization free energy of solvation -33.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds