Wall clock time and date at job start Wed Apr 1 2020 05:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34179 * 125.43410 * 2 1 4 4 C 1.47021 * 105.95470 * 180.13696 * 3 2 1 5 5 C 1.47380 * 127.19475 * 179.82881 * 4 3 2 6 6 O 1.21615 * 119.99946 * 172.71589 * 5 4 3 7 7 N 1.34779 * 120.00057 * 352.71767 * 5 4 3 8 8 C 1.47201 * 126.70117 * 354.05860 * 7 5 4 9 9 C 1.56125 * 106.57730 * 211.89482 * 8 7 5 10 10 H 1.08997 * 113.85810 * 102.86656 * 9 8 7 11 11 C 1.54306 * 109.30594 * 229.01330 * 9 8 7 12 12 N 1.48518 * 104.79118 * 134.89583 * 11 9 8 13 13 C 1.46902 * 110.99973 * 200.71831 * 12 11 9 14 14 C 1.50707 * 109.47112 * 170.00296 * 13 12 11 15 15 O 1.21296 * 119.99948 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99756 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99712 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00368 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99937 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99962 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00090 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47082 * 90.00209 * 21 19 17 23 23 H 1.48493 * 109.47268 * 210.00056 * 21 19 17 24 24 H 1.48497 * 109.47212 * 330.00492 * 21 19 17 25 25 C 1.48531 * 104.21258 * 320.26762 * 12 11 9 26 26 C 1.54305 * 104.68931 * 39.67806 * 25 12 11 27 27 H 1.08997 * 112.04986 * 97.98445 * 26 25 12 28 28 C 1.47203 * 126.70222 * 174.05347 * 7 5 4 29 29 C 1.36415 * 105.61503 * 359.57395 * 4 3 2 30 30 O 1.33654 * 108.39719 * 0.25631 * 29 4 3 31 31 H 1.09000 * 109.46730 * 180.31499 * 1 2 3 32 32 H 1.08992 * 109.47466 * 300.31683 * 1 2 3 33 33 H 1.08997 * 109.47108 * 60.32098 * 1 2 3 34 34 H 1.08002 * 127.02511 * 359.97438 * 3 2 1 35 35 H 1.09003 * 110.06913 * 330.55847 * 8 7 5 36 36 H 1.09000 * 110.07133 * 92.08290 * 8 7 5 37 37 H 1.09001 * 110.38611 * 16.03923 * 11 9 8 38 38 H 1.08995 * 110.39653 * 253.75900 * 11 9 8 39 39 H 1.09000 * 109.46905 * 289.99895 * 13 12 11 40 40 H 1.08992 * 109.47265 * 49.99925 * 13 12 11 41 41 H 0.96994 * 120.00366 * 359.97438 * 16 14 13 42 42 H 0.97002 * 119.99934 * 180.02562 * 20 19 17 43 43 H 1.09000 * 110.39564 * 158.48239 * 25 12 11 44 44 H 1.09002 * 110.39189 * 280.76003 * 25 12 11 45 45 H 1.09000 * 110.06809 * 29.44775 * 28 7 5 46 46 H 1.08991 * 110.07173 * 267.91273 * 28 7 5 47 47 H 1.08001 * 125.80377 * 180.25670 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0933 0.0000 4 6 3.6710 0.6030 -0.0034 5 6 4.9024 1.4127 -0.0082 6 8 5.9849 0.8740 0.1230 7 7 4.8290 2.7501 -0.1578 8 6 3.6197 3.5379 -0.4475 9 6 4.0794 4.7625 -1.2999 10 1 3.8598 4.6669 -2.3632 11 6 3.4852 6.0538 -0.6995 12 7 4.6135 7.0195 -0.6853 13 6 4.3681 8.1016 0.2774 14 6 5.6233 8.9186 0.4455 15 8 6.6240 8.6276 -0.1752 16 7 5.6342 9.9718 1.2863 17 6 6.7760 10.7153 1.4389 18 1 7.6667 10.4568 0.8856 19 6 6.7871 11.8015 2.3053 20 7 5.7034 12.1158 2.9789 21 14 8.3429 12.8142 2.5137 22 1 8.3496 13.9208 1.5234 23 1 8.3861 13.3784 3.8866 24 1 9.5297 11.9485 2.2966 25 6 5.7868 6.2034 -0.2811 26 6 5.6046 4.8622 -1.0221 27 1 6.1928 4.8179 -1.9387 28 6 5.9424 3.7084 -0.0634 29 6 3.5791 -0.7580 0.0047 30 8 2.2853 -1.0934 0.0066 31 1 -0.3633 -1.0277 0.0056 32 1 -0.3634 0.5187 0.8870 33 1 -0.3633 0.5088 -0.8928 34 1 1.9594 2.1231 -0.0004 35 1 2.9123 2.9396 -1.0219 36 1 3.1592 3.8720 0.4822 37 1 3.1281 5.8719 0.3142 38 1 2.6746 6.4260 -1.3259 39 1 3.5655 8.7405 -0.0910 40 1 4.0809 7.6749 1.2383 41 1 4.8342 10.2043 1.7830 42 1 5.7111 12.8743 3.5835 43 1 6.7121 6.6874 -0.5937 44 1 5.7869 6.0465 0.7976 45 1 6.8739 3.2306 -0.3667 46 1 6.0282 4.0827 0.9567 47 1 4.4104 -1.4474 0.0088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717009264.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:26 Heat of formation + Delta-G solvation = -53.189199 kcal Electronic energy + Delta-G solvation = -30110.888082 eV Core-core repulsion = 25873.901751 eV Total energy + Delta-G solvation = -4236.986331 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.59652 -41.61460 -40.35703 -39.38849 -36.91668 -35.86728 -34.34024 -33.35872 -33.03078 -32.46872 -31.62238 -28.85948 -27.61425 -27.19975 -26.67142 -25.34717 -23.33511 -22.56167 -22.18532 -21.02041 -20.69278 -19.92906 -19.67688 -18.50800 -17.88911 -17.60659 -17.35300 -16.96910 -16.73298 -16.68638 -16.40330 -16.08962 -15.89585 -15.50329 -15.34786 -14.71071 -14.60244 -14.24489 -14.06396 -14.00562 -13.86826 -13.72049 -13.56594 -13.37274 -13.26959 -13.09443 -12.98957 -12.74478 -12.56811 -12.44609 -12.40307 -12.14636 -11.99198 -11.71860 -11.65935 -11.44520 -11.24008 -10.84165 -10.20266 -10.00879 -9.92733 -9.50475 -9.34046 -8.47248 -5.95414 0.29016 1.01534 1.37019 1.41101 1.53357 1.72916 1.97186 2.04558 2.18164 2.28223 2.84937 3.16507 3.20669 3.37662 3.41966 3.55879 3.70624 3.88584 3.94704 4.01545 4.15782 4.22579 4.29756 4.32424 4.36793 4.44492 4.47813 4.55425 4.57475 4.69777 4.73449 4.76815 4.79488 4.80151 4.86425 4.89106 5.06884 5.09522 5.14443 5.27088 5.29786 5.41330 5.43805 5.84271 5.92544 6.01908 6.11126 6.39232 6.60455 6.95713 7.12924 7.55881 8.11933 8.70100 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021676 B = 0.001961 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.450987 B =14274.852597 C =14751.621077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.009 4.009 3 C -0.205 4.205 4 C -0.261 4.261 5 C 0.601 3.399 6 O -0.590 6.590 7 N -0.609 5.609 8 C 0.099 3.901 9 C -0.088 4.088 10 H 0.118 0.882 11 C 0.038 3.962 12 N -0.506 5.506 13 C 0.047 3.953 14 C 0.437 3.563 15 O -0.615 6.615 16 N -0.573 5.573 17 C -0.331 4.331 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.271 1.271 23 H -0.271 1.271 24 H -0.274 1.274 25 C 0.048 3.952 26 C -0.097 4.097 27 H 0.093 0.907 28 C 0.113 3.887 29 C 0.051 3.949 30 O -0.179 6.179 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.185 0.815 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.070 0.930 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.074 0.926 44 H 0.030 0.970 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.827 -22.930 -5.703 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.057 4.057 3 C -0.223 4.223 4 C -0.265 4.265 5 C 0.394 3.606 6 O -0.472 6.472 7 N -0.340 5.340 8 C -0.023 4.023 9 C -0.107 4.107 10 H 0.136 0.864 11 C -0.089 4.089 12 N -0.230 5.230 13 C -0.084 4.084 14 C 0.225 3.775 15 O -0.502 6.502 16 N -0.210 5.210 17 C -0.461 4.461 18 H 0.096 0.904 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.196 1.196 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.080 4.080 26 C -0.117 4.117 27 H 0.112 0.888 28 C -0.010 4.010 29 C -0.019 4.019 30 O -0.074 6.074 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.202 0.798 35 H 0.129 0.871 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.088 0.912 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.048 0.952 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -15.710 -23.336 -6.388 28.847 hybrid contribution 1.065 0.846 1.427 1.972 sum -14.645 -22.490 -4.961 27.292 Atomic orbital electron populations 1.20572 0.81872 1.05258 1.05493 1.23105 0.95671 0.83071 1.03893 1.23200 0.89344 1.01253 1.08533 1.21306 0.93739 0.94548 1.16933 1.17277 0.87717 0.80316 0.75326 1.90772 1.31051 1.71881 1.53520 1.48307 1.11322 1.04834 1.69576 1.23186 0.87142 0.91883 1.00057 1.23211 0.92803 0.93470 1.01247 0.86383 1.23413 0.93963 0.90525 1.01043 1.65221 1.03907 1.08726 1.45147 1.21979 0.95538 0.94713 0.96207 1.20804 0.90986 0.83378 0.82334 1.90455 1.37511 1.71534 1.50668 1.41923 1.13613 1.26346 1.39144 1.19635 0.92174 1.09592 1.24661 0.90367 1.26014 1.01549 0.98218 0.95525 1.69666 1.29125 1.29366 1.27898 0.84953 0.77562 0.78052 0.77936 1.19625 1.19580 1.19923 1.23191 0.96405 0.91996 0.96440 1.22700 0.98152 0.92438 0.98373 0.88840 1.22103 0.90756 0.88800 0.99311 1.24665 0.84329 0.95332 0.97620 1.83810 1.16431 1.36305 1.70888 0.89749 0.87928 0.87571 0.79827 0.87140 0.89429 0.92126 0.87457 0.86726 0.91242 0.76984 0.91319 0.90739 0.95154 0.91266 0.91635 0.75254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.40 71.24 0.74 0.44 16 2 C -0.01 -0.11 7.28 24.76 0.18 0.07 16 3 C -0.20 -2.86 9.17 23.65 0.22 -2.64 16 4 C -0.26 -5.29 6.20 -18.99 -0.12 -5.41 16 5 C 0.60 15.96 7.86 86.65 0.68 16.64 16 6 O -0.59 -20.10 17.14 -4.08 -0.07 -20.17 16 7 N -0.61 -14.07 3.32 -814.45 -2.70 -16.77 16 8 C 0.10 1.52 5.00 87.33 0.44 1.95 16 9 C -0.09 -1.55 4.24 -8.46 -0.04 -1.58 16 10 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 11 C 0.04 0.72 6.05 86.43 0.52 1.24 16 12 N -0.51 -15.24 5.33 -886.54 -4.73 -19.97 16 13 C 0.05 1.55 5.55 85.56 0.47 2.02 16 14 C 0.44 20.39 7.50 87.66 0.66 21.05 16 15 O -0.62 -33.20 13.24 -3.08 -0.04 -33.24 16 16 N -0.57 -29.04 5.29 -306.98 -1.62 -30.66 16 17 C -0.33 -18.70 9.68 84.04 0.81 -17.88 16 18 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 19 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 20 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 21 Si 0.99 43.01 29.55 68.60 2.03 45.04 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 C 0.05 1.55 4.85 86.43 0.42 1.97 16 26 C -0.10 -2.39 4.03 -9.28 -0.04 -2.43 16 27 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 28 C 0.11 2.92 6.58 86.50 0.57 3.49 16 29 C 0.05 0.88 11.91 67.39 0.80 1.68 16 30 O -0.18 -2.78 10.52 4.44 0.05 -2.73 16 31 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.18 1.66 5.40 -2.91 -0.02 1.65 16 35 H 0.11 1.22 5.37 -2.39 -0.01 1.20 16 36 H 0.09 1.15 7.10 -2.39 -0.02 1.13 16 37 H 0.06 1.01 6.87 -2.39 -0.02 0.99 16 38 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.07 2.02 7.88 -2.39 -0.02 2.00 16 41 H 0.40 19.01 7.90 -92.71 -0.73 18.28 16 42 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 43 H 0.07 3.08 6.04 -2.39 -0.01 3.07 16 44 H 0.03 1.02 7.02 -2.39 -0.02 1.00 16 45 H 0.07 1.96 7.87 -2.39 -0.02 1.94 16 46 H 0.07 1.77 7.11 -2.39 -0.02 1.75 16 47 H 0.23 3.02 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -76.65 379.61 0.27 -76.38 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.29 Total: 30.80 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 6.79 Total: 20.37 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -8.77 Total: -116.45 kcal Atomic # 8 Polarization: -56.08 SS G_CDS: -0.06 Total: -56.15 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -76.65 0.27 -76.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717009264.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.195 kcal (2) G-P(sol) polarization free energy of solvation -76.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds